BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005177
         (939 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002302200.1| predicted protein [Populus trichocarpa] gi|2...   454   e-125
ref|XP_002520247.1| Shwachman-Bodian-Diamond syndrome protein, p...   450   e-124
ref|XP_002266110.1| PREDICTED: ribosome maturation protein SBDS ...   446   e-123
ref|XP_002306675.1| predicted protein [Populus trichocarpa] gi|2...   445   e-123
ref|XP_002891277.1| transcription factor [Arabidopsis lyrata sub...   424   e-116

>ref|XP_002302200.1| predicted protein [Populus trichocarpa] gi|222843926|gb|EEE81473.1|
           predicted protein [Populus trichocarpa]
          Length = 356

 Score =  454 bits (1168), Expect = e-125
 Identities = 225/294 (76%), Positives = 257/294 (87%)
 Frame = +1

Query: 1   LKKHGLRFEIACFKNKVLSYRSGVEKDLDEVVQSHTVYSNVSKGVLAKSRELNLAFGTDD 180
           LKKHG+RFEIAC+KNKVLS+RSGVEKDLDEV+QSHTVYSNVSKGVLAK+ +L  AFG DD
Sbjct: 22  LKKHGMRFEIACYKNKVLSWRSGVEKDLDEVLQSHTVYSNVSKGVLAKNSDLVKAFGHDD 81

Query: 181 HSKICLEILDKGELQVAGKERESQLSSQFRDIATIVMQKTINPETQRPYTISMIERLMHE 360
           H+KICLEIL+KGELQVAGKER+SQLSSQFRDIATIVMQKTINPETQRPYTISM+ERLMHE
Sbjct: 82  HTKICLEILEKGELQVAGKERDSQLSSQFRDIATIVMQKTINPETQRPYTISMVERLMHE 141

Query: 361 IHFAVDPHNSSKKQALEVIRELQKQFPIKRAPMRLRLIIPQEKFTSLSEKLNAWKTNIVS 540
           IHFAVDPH+SSKKQAL+VIRELQK FPIKR+PMRLRL +  +KF +L EKLNAW  N+VS
Sbjct: 142 IHFAVDPHSSSKKQALDVIRELQKHFPIKRSPMRLRLAVIGQKFPNLLEKLNAWDANVVS 201

Query: 541 KDESGEHLSVVCEIEPSYFRDCDAMVRNLQGRVEILAVSVHFEGDTSVDHYDDQEEFSSS 720
           KDESG H SV+CE++P +FRDCDA+VRNLQGR+EILAVSVHFEGDT VD +DD E+   +
Sbjct: 202 KDESGSHQSVICEMDPGFFRDCDALVRNLQGRMEILAVSVHFEGDTHVDDFDDYEDVPPA 261

Query: 721 HSKVLTDAVVKLSEKVQKQAISEGNGSTGAEAKQNKCSTCDAVIGDAKQYRDHF 882
             K   D+ V+LSEK+QKQ ISE        AKQNKCSTC+A +GDAKQ+RDHF
Sbjct: 262 LPKESADSEVQLSEKIQKQTISE-EKKADTLAKQNKCSTCNAFVGDAKQFRDHF 314


>ref|XP_002520247.1| Shwachman-Bodian-Diamond syndrome protein, putative [Ricinus
           communis] gi|223540466|gb|EEF42033.1|
           Shwachman-Bodian-Diamond syndrome protein, putative
           [Ricinus communis]
          Length = 356

 Score =  450 bits (1158), Expect = e-124
 Identities = 222/294 (75%), Positives = 255/294 (86%)
 Frame = +1

Query: 1   LKKHGLRFEIACFKNKVLSYRSGVEKDLDEVVQSHTVYSNVSKGVLAKSRELNLAFGTDD 180
           LKKHG RFEIAC+KNKVLS+RSGVEKDLDEV+QSHTVYSNVSKGVLAKS++L  AFGTDD
Sbjct: 22  LKKHGFRFEIACYKNKVLSWRSGVEKDLDEVLQSHTVYSNVSKGVLAKSKDLEKAFGTDD 81

Query: 181 HSKICLEILDKGELQVAGKERESQLSSQFRDIATIVMQKTINPETQRPYTISMIERLMHE 360
            +KICLEIL+KGELQVAGKERESQL+SQFRDIAT+VMQKT+NPETQRPYTISMIERLMHE
Sbjct: 82  QTKICLEILEKGELQVAGKERESQLTSQFRDIATMVMQKTVNPETQRPYTISMIERLMHE 141

Query: 361 IHFAVDPHNSSKKQALEVIRELQKQFPIKRAPMRLRLIIPQEKFTSLSEKLNAWKTNIVS 540
           IHFAVDPH+SSKKQALEVIRELQK FPIKR+PMRLRL I +   +SL EKLN W   +VS
Sbjct: 142 IHFAVDPHSSSKKQALEVIRELQKHFPIKRSPMRLRLAISEPNISSLLEKLNTWNATVVS 201

Query: 541 KDESGEHLSVVCEIEPSYFRDCDAMVRNLQGRVEILAVSVHFEGDTSVDHYDDQEEFSSS 720
           KDESG  LSV+CE++P  FR+CD +VRNLQGR+EILA+SVHFEGD  VD YDD E+  +S
Sbjct: 202 KDESGSQLSVICELDPGLFRECDVLVRNLQGRLEILAMSVHFEGDAHVDDYDDYEDVPAS 261

Query: 721 HSKVLTDAVVKLSEKVQKQAISEGNGSTGAEAKQNKCSTCDAVIGDAKQYRDHF 882
             K  TD+VV+LSEK+QKQ IS    + G E KQ+KC+TC+A +GDAK+YRDHF
Sbjct: 262 IPKESTDSVVQLSEKIQKQTISAEKKNEG-EVKQHKCNTCNAFVGDAKEYRDHF 314


>ref|XP_002266110.1| PREDICTED: ribosome maturation protein SBDS [Vitis vinifera]
           gi|302142747|emb|CBI19950.3| unnamed protein product
           [Vitis vinifera]
          Length = 358

 Score =  446 bits (1148), Expect = e-123
 Identities = 224/295 (75%), Positives = 253/295 (85%), Gaps = 1/295 (0%)
 Frame = +1

Query: 1   LKKHGLRFEIACFKNKVLSYRSGVEKDLDEVVQSHTVYSNVSKGVLAKSRELNLAFGTD- 177
           LKK G+RFEIAC+KNKVLS+RSGVEKDLDEV+QSH VYSNVSKGVLAKS++L  AFG + 
Sbjct: 22  LKKKGIRFEIACYKNKVLSWRSGVEKDLDEVLQSHIVYSNVSKGVLAKSKDLEAAFGKER 81

Query: 178 DHSKICLEILDKGELQVAGKERESQLSSQFRDIATIVMQKTINPETQRPYTISMIERLMH 357
           D ++I LEILDKGELQVAGKERESQLSSQFRDIATIVMQKTINPETQRPYT SMIERLMH
Sbjct: 82  DQTEILLEILDKGELQVAGKERESQLSSQFRDIATIVMQKTINPETQRPYTSSMIERLMH 141

Query: 358 EIHFAVDPHNSSKKQALEVIRELQKQFPIKRAPMRLRLIIPQEKFTSLSEKLNAWKTNIV 537
           EIHF+VDP++SSKKQALEVIRELQK FPIKR PMRLRL +PQ+ F+SL EKLN W  +IV
Sbjct: 142 EIHFSVDPNSSSKKQALEVIRELQKHFPIKRCPMRLRLTVPQQNFSSLLEKLNVWNASIV 201

Query: 538 SKDESGEHLSVVCEIEPSYFRDCDAMVRNLQGRVEILAVSVHFEGDTSVDHYDDQEEFSS 717
           SKDESG  LS++CE+EP  FRDCDA+VRNLQGR+EILAVS+H EGDT VD YDD E   S
Sbjct: 202 SKDESGGQLSIICEMEPGIFRDCDALVRNLQGRLEILAVSLHMEGDTHVDDYDDHEHVPS 261

Query: 718 SHSKVLTDAVVKLSEKVQKQAISEGNGSTGAEAKQNKCSTCDAVIGDAKQYRDHF 882
              K   D V++LSEKVQ+Q IS G+ ST  E KQNKCSTCDA +GD+KQYR+HF
Sbjct: 262 RLPKESADPVLQLSEKVQRQTISVGSSSTEGEVKQNKCSTCDAFVGDSKQYREHF 316


>ref|XP_002306675.1| predicted protein [Populus trichocarpa] gi|222856124|gb|EEE93671.1|
           predicted protein [Populus trichocarpa]
          Length = 357

 Score =  445 bits (1144), Expect = e-123
 Identities = 221/295 (74%), Positives = 254/295 (86%), Gaps = 1/295 (0%)
 Frame = +1

Query: 1   LKKHGLRFEIACFKNKVLSYRSGVEKDLDEVVQSH-TVYSNVSKGVLAKSRELNLAFGTD 177
           LKKHG+RFEIAC+KNKVLS+RSGVEKDLDEV+QSH TVYSNVSKG+LAKS +LN AFG D
Sbjct: 22  LKKHGMRFEIACYKNKVLSWRSGVEKDLDEVLQSHHTVYSNVSKGILAKSLDLNKAFGHD 81

Query: 178 DHSKICLEILDKGELQVAGKERESQLSSQFRDIATIVMQKTINPETQRPYTISMIERLMH 357
           D ++ICLEILDKGELQVAGKERESQLSSQFRDIATIVMQKTINPETQRPYTISMIERLMH
Sbjct: 82  DQTRICLEILDKGELQVAGKERESQLSSQFRDIATIVMQKTINPETQRPYTISMIERLMH 141

Query: 358 EIHFAVDPHNSSKKQALEVIRELQKQFPIKRAPMRLRLIIPQEKFTSLSEKLNAWKTNIV 537
           E HFAV+PHNSSKKQAL+VIRELQK FPIKR+PMRL L +  + F++L EKL AW  N+V
Sbjct: 142 ETHFAVEPHNSSKKQALDVIRELQKHFPIKRSPMRLGLTVSGQNFSTLLEKLGAWDANVV 201

Query: 538 SKDESGEHLSVVCEIEPSYFRDCDAMVRNLQGRVEILAVSVHFEGDTSVDHYDDQEEFSS 717
           SKDESG   S++CE++P +FRDCD +VRNLQGR+EILAVSVHFE DT VD YDD E+  S
Sbjct: 202 SKDESGSRQSIICEMDPGFFRDCDTLVRNLQGRLEILAVSVHFEEDTHVDDYDDYEDVPS 261

Query: 718 SHSKVLTDAVVKLSEKVQKQAISEGNGSTGAEAKQNKCSTCDAVIGDAKQYRDHF 882
           +  K  TD+ V+LSEK+QKQ +S+     GAE KQNKCSTC+  +GDAKQ+RDHF
Sbjct: 262 ALPKGSTDSAVQLSEKIQKQTLSD-EKKAGAEVKQNKCSTCNVSVGDAKQFRDHF 315


>ref|XP_002891277.1| transcription factor [Arabidopsis lyrata subsp. lyrata]
           gi|297337119|gb|EFH67536.1| transcription factor
           [Arabidopsis lyrata subsp. lyrata]
          Length = 370

 Score =  424 bits (1089), Expect = e-116
 Identities = 209/306 (68%), Positives = 254/306 (83%), Gaps = 13/306 (4%)
 Frame = +1

Query: 1   LKKHGLRFEIACFKNKVLSYRSGVEKDLDEVVQSHTVYSNVSKGVLAKSRELNLAFGTDD 180
           LKK G RFEIAC+KNKVLS+RSGVEKD+DEV+QSHTVYSNVSKGVLAKS++L  AFG+DD
Sbjct: 22  LKKQGNRFEIACYKNKVLSWRSGVEKDIDEVLQSHTVYSNVSKGVLAKSKDLMKAFGSDD 81

Query: 181 HSKICLEILDKGELQVAGKERESQLSSQFRDIATIVMQKTINPETQRPYTISMIERLMHE 360
           H+KIC++IL+KGELQVAGKERESQ SSQFRDIATIVMQKTINPETQRPYTI M+ERLMHE
Sbjct: 82  HTKICIDILEKGELQVAGKERESQFSSQFRDIATIVMQKTINPETQRPYTIGMVERLMHE 141

Query: 361 IHFAVDPHNSSKKQALEVIRELQKQFPIKRAPMRLRLIIPQEKFTSLSEKLNAWKTNIVS 540
           IHFAVDPH++SKKQAL+VIRELQKQFPIKR+PMRLRL +P + F SL EKL  W+ ++VS
Sbjct: 142 IHFAVDPHSNSKKQALDVIRELQKQFPIKRSPMRLRLTVPVQNFPSLLEKLKEWEASVVS 201

Query: 541 KDESGEHLSVVCEIEPSYFRDCDAMVRNLQGRVEILAVSVHFEGDTSVDHYDDQEEF--- 711
           KDESG  +S VCE+EP  FR+CD+ VRN+QGR+EILAVSVH EGDT++DHYD+ ++    
Sbjct: 202 KDESGTQMSTVCEMEPGLFRECDSHVRNMQGRLEILAVSVHAEGDTNMDHYDEHDDMAFQ 261

Query: 712 -------SSSHSKVLTDAVVKLSEKVQKQAISEGN---GSTGAEAKQNKCSTCDAVIGDA 861
                  + + +K LTD V++LS+K+QKQ IS  +      G E K  KCSTC+  +G+A
Sbjct: 262 THKPLLPADTETKDLTDPVIELSKKMQKQEISTADTIKQEGGEEKKGTKCSTCNTFVGEA 321

Query: 862 KQYRDH 879
           K+YR+H
Sbjct: 322 KEYREH 327