BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005160
         (553 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...    63   8e-11
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...    63   8e-11
gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycope...    57   3e-07
ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin...    57   2e-06
ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocar...    55   6e-06

>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E
           subunit 1-like [Cucumis sativus]
          Length = 2019

 Score = 62.8 bits (151), Expect(2) = 8e-11
 Identities = 30/71 (42%), Positives = 50/71 (70%)
 Frame = +2

Query: 341 RRVEAPVVISFPKLSGLGKLMNFKCNSSVNKVVEQIGLLGIQLTF*GKVYARNLVKDMNS 520
           R V+ P      KLS LGKL + K  S++NKVV+QIG LG+QL+  G+ Y+++L++D+ S
Sbjct: 695 RSVKVPFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKSLIEDVAS 754

Query: 521 LFFVKFAANGV 553
           LF  +++++ +
Sbjct: 755 LFHNRYSSDKI 765



 Score = 28.9 bits (63), Expect(2) = 8e-11
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +3

Query: 234 LQIFQLGVHDVSFLLHRLRCRCPELVELQLES 329
           LQ  Q  +  +S LL++LR    ELVELQLE+
Sbjct: 661 LQALQKNIQVLSPLLYQLRSTFNELVELQLEN 692


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
           sativus]
          Length = 1959

 Score = 62.8 bits (151), Expect(2) = 8e-11
 Identities = 30/71 (42%), Positives = 50/71 (70%)
 Frame = +2

Query: 341 RRVEAPVVISFPKLSGLGKLMNFKCNSSVNKVVEQIGLLGIQLTF*GKVYARNLVKDMNS 520
           R V+ P      KLS LGKL + K  S++NKVV+QIG LG+QL+  G+ Y+++L++D+ S
Sbjct: 665 RSVKVPFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKSLIEDVAS 724

Query: 521 LFFVKFAANGV 553
           LF  +++++ +
Sbjct: 725 LFHNRYSSDKI 735



 Score = 28.9 bits (63), Expect(2) = 8e-11
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +3

Query: 234 LQIFQLGVHDVSFLLHRLRCRCPELVELQLES 329
           LQ  Q  +  +S LL++LR    ELVELQLE+
Sbjct: 631 LQALQKNIQVLSPLLYQLRSTFNELVELQLEN 662


>gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1127

 Score = 56.6 bits (135), Expect(2) = 3e-07
 Identities = 31/70 (44%), Positives = 43/70 (61%)
 Frame = +2

Query: 341 RRVEAPVVISFPKLSGLGKLMNFKCNSSVNKVVEQIGLLGIQLTF*GKVYARNLVKDMNS 520
           R  + PV+    K SG+G L++ K  S+ NKVV+QIG LG+Q++  GK Y   LV DM  
Sbjct: 217 RNEKLPVIDFVLKSSGMGVLIDSKSESAFNKVVQQIGFLGLQISDRGKFYXXTLVHDMAQ 276

Query: 521 LFFVKFAANG 550
           LF  K+ + G
Sbjct: 277 LFQKKYPSVG 286



 Score = 23.1 bits (48), Expect(2) = 3e-07
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 264 VSFLLHRLRCRCPELVELQLE 326
           +S LLH LR    E VE+QLE
Sbjct: 193 MSKLLHHLRSSYNESVEVQLE 213


>ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 991

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 28/69 (40%), Positives = 46/69 (66%)
 Frame = +2

Query: 341 RRVEAPVVISFPKLSGLGKLMNFKCNSSVNKVVEQIGLLGIQLTF*GKVYARNLVKDMNS 520
           RR + PV     +LS +G L+++K +S++ KVV+QIG LG+Q++  GK Y + LV+DM  
Sbjct: 668 RRAKLPVADFIVRLSSIGDLIDYKSDSAMTKVVQQIGFLGLQISDRGKFYTKTLVEDMAL 727

Query: 521 LFFVKFAAN 547
            F  K+ ++
Sbjct: 728 HFESKYPSD 736


>ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocarpa]
           gi|222841357|gb|EEE78904.1| RNA polymerase IV subunit
           [Populus trichocarpa]
          Length = 924

 Score = 55.5 bits (132), Expect = 6e-06
 Identities = 30/69 (43%), Positives = 46/69 (66%)
 Frame = +2

Query: 341 RRVEAPVVISFPKLSGLGKLMNFKCNSSVNKVVEQIGLLGIQLTF*GKVYARNLVKDMNS 520
           R V+ PV       S LG L++ K +++V KVV+QIG LG+Q++  GK+Y++ LV+D+ S
Sbjct: 667 RDVKQPVREFILTSSALGYLIDSKSDAAVTKVVQQIGFLGLQVSDRGKLYSKTLVEDLAS 726

Query: 521 LFFVKFAAN 547
            F  K+ AN
Sbjct: 727 HFLSKYPAN 735