BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005149
         (1257 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002297879.1| predicted protein [Populus trichocarpa] gi|2...   410   e-112
ref|XP_002271311.1| PREDICTED: cytochrome b-c1 complex subunit R...   405   e-110
sp|P49729.1|UCRI1_TOBAC RecName: Full=Cytochrome b-c1 complex su...   403   e-110
ref|XP_004143762.1| PREDICTED: cytochrome b-c1 complex subunit R...   402   e-109
sp|P51132.1|UCRI2_TOBAC RecName: Full=Cytochrome b-c1 complex su...   402   e-109

>ref|XP_002297879.1| predicted protein [Populus trichocarpa] gi|222845137|gb|EEE82684.1|
            predicted protein [Populus trichocarpa]
          Length = 275

 Score =  410 bits (1053), Expect = e-112
 Identities = 204/265 (76%), Positives = 228/265 (86%)
 Frame = -1

Query: 1164 NQTAPAMISRNLINXXXXXXXXXXDYSTRSIVVPFYGFNSRSDLFFFGSTRGFASDSLTS 985
            +QT  A +SRN               S+R I+ P Y F+   DL      RGF+S +LTS
Sbjct: 19   SQTTSAFVSRN--TAFVSDDGRDSAASSRPILSP-YQFSFPPDLI-----RGFSSGALTS 70

Query: 984  RPDTGIMPNIPPTVAAVQNPTSKIVYDDYNHERFPPGDPSKRAFAYFVLTGGRFVYASLI 805
              D GI+ ++PPTVAAV+NPTSKIVYD++NHER+PPGDPSKRAFAYFVLTGGRFVYASLI
Sbjct: 71   GHDMGIISDLPPTVAAVKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLI 130

Query: 804  RLLILKFVLSMSASKDVLALASLEVDISSIEPGSTVTVKWRGKPVFIRRRTEDDIQLANS 625
            RLL+LKFVLSMSASKDVLA+ASLEVD+SSIEPGSTVTVKWRGKPVFIRRRTEDDI+LANS
Sbjct: 131  RLLVLKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEDDIKLANS 190

Query: 624  VDVATLRDPQEDAVRVKNPEWLIVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRI 445
            VD+A+LRDPQEDA RVKNPEWL+VVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRI
Sbjct: 191  VDLASLRDPQEDAARVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRI 250

Query: 444  RKGPAPYNLEVPTYSFLEDNKLLIG 370
            RKGPAPYNLEVPTYSF+E+NKLL+G
Sbjct: 251  RKGPAPYNLEVPTYSFMEENKLLVG 275


>ref|XP_002271311.1| PREDICTED: cytochrome b-c1 complex subunit Rieske-2, mitochondrial
            [Vitis vinifera] gi|296085532|emb|CBI29264.3| unnamed
            protein product [Vitis vinifera]
          Length = 272

 Score =  405 bits (1041), Expect = e-110
 Identities = 197/239 (82%), Positives = 218/239 (91%)
 Frame = -1

Query: 1086 STRSIVVPFYGFNSRSDLFFFGSTRGFASDSLTSRPDTGIMPNIPPTVAAVQNPTSKIVY 907
            S+RSI  P   FNS     F    RGF+S+SL    D G++ ++PPTVAA++NPTSKIVY
Sbjct: 39   SSRSISSPHL-FNSE----FRDLIRGFSSESLAPSHDLGMISDLPPTVAALKNPTSKIVY 93

Query: 906  DDYNHERFPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVD 727
            DD+NHERFPPGDPSKRAFAYFVLTGGRF+YASLIRLL+LKFVLSMSASKDVLALAS+EVD
Sbjct: 94   DDHNHERFPPGDPSKRAFAYFVLTGGRFIYASLIRLLVLKFVLSMSASKDVLALASIEVD 153

Query: 726  ISSIEPGSTVTVKWRGKPVFIRRRTEDDIQLANSVDVATLRDPQEDAVRVKNPEWLIVVG 547
            +SSIEPGSTVTVKWRGKPVFIRRRTEDDI+LANSVDV +LRDPQEDAVRVK+PEWLIV+G
Sbjct: 154  LSSIEPGSTVTVKWRGKPVFIRRRTEDDIKLANSVDVGSLRDPQEDAVRVKDPEWLIVIG 213

Query: 546  VCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEDNKLLIG 370
            VCTHLGCIPLPNAGDFGGWFCPCHGSHYD+SGRIRKGPAPYNLEVPTYSFLE+NKL+IG
Sbjct: 214  VCTHLGCIPLPNAGDFGGWFCPCHGSHYDVSGRIRKGPAPYNLEVPTYSFLEENKLMIG 272


>sp|P49729.1|UCRI1_TOBAC RecName: Full=Cytochrome b-c1 complex subunit Rieske-1,
            mitochondrial; AltName: Full=Complex III subunit 5-1;
            AltName: Full=Rieske iron-sulfur protein 1; Short=RISP1;
            AltName: Full=Ubiquinol-cytochrome c reductase
            iron-sulfur subunit 1; Flags: Precursor
            gi|170322|gb|AAA34112.1| Rieske Fe-S protein, partial
            [Nicotiana tabacum]
          Length = 258

 Score =  403 bits (1035), Expect = e-110
 Identities = 188/220 (85%), Positives = 210/220 (95%)
 Frame = -1

Query: 1029 FFGSTRGFASDSLTSRPDTGIMPNIPPTVAAVQNPTSKIVYDDYNHERFPPGDPSKRAFA 850
            F   TRGF+S+S++   D G++P++PPTVAA++NPTSKIVYD++NHER+PPGDPSKRAFA
Sbjct: 39   FLHHTRGFSSNSVSPAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFA 98

Query: 849  YFVLTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDISSIEPGSTVTVKWRGKPV 670
            YFVLTGGRFVYASL+RLLILKFVLSMSASKDVLALASLEVD+SSIEPG+TVTVKWRGKPV
Sbjct: 99   YFVLTGGRFVYASLMRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPV 158

Query: 669  FIRRRTEDDIQLANSVDVATLRDPQEDAVRVKNPEWLIVVGVCTHLGCIPLPNAGDFGGW 490
            FIRRRTEDDI LANSVD+ +LRDPQ+DA RVKNPEWL+V+GVCTHLGCIPLPNAGDFGGW
Sbjct: 159  FIRRRTEDDISLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGW 218

Query: 489  FCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEDNKLLIG 370
            FCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLE+NKLLIG
Sbjct: 219  FCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 258


>ref|XP_004143762.1| PREDICTED: cytochrome b-c1 complex subunit Rieske-2,
            mitochondrial-like [Cucumis sativus]
            gi|449516924|ref|XP_004165496.1| PREDICTED: cytochrome
            b-c1 complex subunit Rieske-2, mitochondrial-like
            [Cucumis sativus]
          Length = 274

 Score =  402 bits (1033), Expect = e-109
 Identities = 187/220 (85%), Positives = 210/220 (95%)
 Frame = -1

Query: 1029 FFGSTRGFASDSLTSRPDTGIMPNIPPTVAAVQNPTSKIVYDDYNHERFPPGDPSKRAFA 850
            F  ++RGFASD+LTS  +  ++P++P T+AAV+NPTSKIVYD+YNHERFPPGDPSKRAFA
Sbjct: 55   FDRNSRGFASDALTSTKENNLVPDVPATIAAVKNPTSKIVYDEYNHERFPPGDPSKRAFA 114

Query: 849  YFVLTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDISSIEPGSTVTVKWRGKPV 670
            YFVL+GGRFVYASLIRLL+LKFVLSMSASKDVLALASLEVD+SSIEPG+TVTVKWRGKPV
Sbjct: 115  YFVLSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGATVTVKWRGKPV 174

Query: 669  FIRRRTEDDIQLANSVDVATLRDPQEDAVRVKNPEWLIVVGVCTHLGCIPLPNAGDFGGW 490
            FIRRRTE+DI+LANSVD+ TLRDPQ+D  RVK+PEWL+VVGVCTHLGCIPLPNAGDFGGW
Sbjct: 175  FIRRRTEEDIKLANSVDIGTLRDPQQDGERVKDPEWLVVVGVCTHLGCIPLPNAGDFGGW 234

Query: 489  FCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEDNKLLIG 370
            FCPCHGSHYD+SGRIRKGPAPYNLEVPTY+FLEDNKLLIG
Sbjct: 235  FCPCHGSHYDVSGRIRKGPAPYNLEVPTYTFLEDNKLLIG 274


>sp|P51132.1|UCRI2_TOBAC RecName: Full=Cytochrome b-c1 complex subunit Rieske-2,
            mitochondrial; AltName: Full=Complex III subunit 5-2;
            AltName: Full=Rieske iron-sulfur protein 2; Short=RISP2;
            AltName: Full=Ubiquinol-cytochrome c reductase
            iron-sulfur subunit 2; Flags: Precursor
            gi|530052|gb|AAA20831.1| Rieske iron-sulfur protein
            [Nicotiana tabacum]
          Length = 272

 Score =  402 bits (1032), Expect = e-109
 Identities = 187/220 (85%), Positives = 210/220 (95%)
 Frame = -1

Query: 1029 FFGSTRGFASDSLTSRPDTGIMPNIPPTVAAVQNPTSKIVYDDYNHERFPPGDPSKRAFA 850
            F   TRGF+S+S++   D G++P++PPTVAA++NPTSKIVYD++NHER+PPGDPSKRAFA
Sbjct: 53   FLHHTRGFSSNSVSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFA 112

Query: 849  YFVLTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDISSIEPGSTVTVKWRGKPV 670
            YFVLTGGRFVYASL+RLLILKFVLSMSASKDVLALASLEVD+SSIEPG+TVTVKWRGKPV
Sbjct: 113  YFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPV 172

Query: 669  FIRRRTEDDIQLANSVDVATLRDPQEDAVRVKNPEWLIVVGVCTHLGCIPLPNAGDFGGW 490
            FIRRRTEDDI LANSVD+ +LRDPQ+DA RVK+PEWL+V+GVCTHLGCIPLPNAGDFGGW
Sbjct: 173  FIRRRTEDDINLANSVDLGSLRDPQQDAERVKSPEWLVVIGVCTHLGCIPLPNAGDFGGW 232

Query: 489  FCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEDNKLLIG 370
            FCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLE+NKLLIG
Sbjct: 233  FCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 272