BLASTX nr result
ID: Coptis25_contig00005114
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00005114
(1319 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002526935.1| dead box ATP-dependent RNA helicase, putativ... 109 5e-42
ref|XP_003547512.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP... 103 6e-42
ref|XP_002277600.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 109 2e-38
ref|NP_001169005.1| uncharacterized protein LOC100382837 [Zea ma... 88 5e-37
ref|XP_003533799.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP... 105 1e-35
>ref|XP_002526935.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223533687|gb|EEF35422.1| dead box ATP-dependent RNA
helicase, putative [Ricinus communis]
Length = 603
Score = 109 bits (272), Expect(3) = 5e-42
Identities = 62/117 (52%), Positives = 77/117 (65%)
Frame = -2
Query: 1189 YGKEIEEILGFLGSRKDGGVSKENAFSKDSKPQRQNLLLSAT*NDKMSHLAKISLENPVM 1010
+GKEIE+IL LGSR V K N S S QRQNLLLSAT N+K++HLA ISLENPVM
Sbjct: 199 FGKEIEDILDLLGSRLTRSVGKGNRDSSISNYQRQNLLLSATLNEKVNHLANISLENPVM 258
Query: 1009 IGIDETKVSTELSKRSGKHLKSIGSDVDDGSEFIGKLPNFSEADYNLPTQLIQRYVK 839
IG+D+ K+ E +H KS+ SD DD E K+ S D+ +P QL+Q+YVK
Sbjct: 259 IGLDDEKMQPEPLL---EHTKSLKSDADDELEHPSKVLKPSTGDFKVPVQLVQKYVK 312
Score = 66.6 bits (161), Expect(3) = 5e-42
Identities = 44/91 (48%), Positives = 53/91 (58%), Gaps = 20/91 (21%)
Frame = -3
Query: 768 FLSVSCGSRLVILLSILRNLNERKAASQKVVVFFSTC--VDFYPKL-------------- 637
++ V CGSRL LLSIL++L E K ASQK+VVFFSTC VDF+ L
Sbjct: 310 YVKVPCGSRLATLLSILKHLFE-KRASQKIVVFFSTCDAVDFHYSLLSEFRFSCTSQSEA 368
Query: 636 ---ELHQK-KAFRLHGNMEHEGRRTAFQGLK 556
E+ + K FRLHGNM+ E RR FQ K
Sbjct: 369 EAAEMFLRCKTFRLHGNMKQEDRRDTFQAFK 399
Score = 43.9 bits (102), Expect(3) = 5e-42
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -1
Query: 512 GLRFPNVTCIIQYDSPGEASEYVHRSER 429
GL P VT IIQYD+PGEA+EYVHR R
Sbjct: 415 GLDLPKVTWIIQYDTPGEATEYVHRVGR 442
Score = 65.5 bits (158), Expect = 3e-08
Identities = 31/36 (86%), Positives = 33/36 (91%)
Frame = -1
Query: 1319 VHEILQKLLHHFH*IVPGYVMGGESRSKEKARLRKG 1212
V+EILQ LLH FH IVPGY+MGGESRSKEKARLRKG
Sbjct: 122 VYEILQGLLHRFHWIVPGYIMGGESRSKEKARLRKG 157
>ref|XP_003547512.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
17-like [Glycine max]
Length = 591
Score = 103 bits (257), Expect(3) = 6e-42
Identities = 59/117 (50%), Positives = 75/117 (64%)
Frame = -2
Query: 1189 YGKEIEEILGFLGSRKDGGVSKENAFSKDSKPQRQNLLLSAT*NDKMSHLAKISLENPVM 1010
+GK IEEIL LGSRK G K+N SK QRQNLLLS T N++++HLAK+SL+NPVM
Sbjct: 193 FGKNIEEILDLLGSRKTGHDDKKNTVPTHSKMQRQNLLLSTTLNERVNHLAKMSLDNPVM 252
Query: 1009 IGIDETKVSTELSKRSGKHLKSIGSDVDDGSEFIGKLPNFSEADYNLPTQLIQRYVK 839
IG+D K T + K L SD D ++ K+P + DY +P QLIQRY+K
Sbjct: 253 IGLDGKKNGTNFNI---KRLDPSESDEDSEDKYYSKVP--TVGDYKVPLQLIQRYMK 304
Score = 70.5 bits (171), Expect(3) = 6e-42
Identities = 48/106 (45%), Positives = 63/106 (59%), Gaps = 20/106 (18%)
Frame = -3
Query: 768 FLSVSCGSRLVILLSILRNLNERKAASQKVVVFFSTC--VDF------------YPKLEL 631
++ V CGSRL +LLSIL++L ER+ SQKVV+FFSTC VDF Y + E
Sbjct: 302 YMKVPCGSRLPVLLSILKHLFEREP-SQKVVLFFSTCDAVDFHYSLLSEFQFSSYSQTEG 360
Query: 630 HQK-----KAFRLHGNMEHEGRRTAFQGLK-QRNQLYCCAQMLLRG 511
Q+ K FRLHGNM+ E RRT+FQ K +++ L + RG
Sbjct: 361 VQQVFLGCKTFRLHGNMQQEDRRTSFQAFKTEKSALLLSTDVSARG 406
Score = 45.4 bits (106), Expect(3) = 6e-42
Identities = 22/32 (68%), Positives = 23/32 (71%)
Frame = -1
Query: 512 GLRFPNVTCIIQYDSPGEASEYVHRSERNTIL 417
GL FP V IIQYDSPGEA+EYVHR R L
Sbjct: 406 GLDFPKVRFIIQYDSPGEATEYVHRVGRTARL 437
Score = 66.2 bits (160), Expect = 2e-08
Identities = 31/36 (86%), Positives = 34/36 (94%)
Frame = -1
Query: 1319 VHEILQKLLHHFH*IVPGYVMGGESRSKEKARLRKG 1212
V+EILQKLLH FH IVPGY+MGGE+RSKEKARLRKG
Sbjct: 116 VYEILQKLLHWFHWIVPGYIMGGENRSKEKARLRKG 151
>ref|XP_002277600.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 17-like [Vitis
vinifera]
Length = 600
Score = 109 bits (272), Expect(2) = 2e-38
Identities = 63/117 (53%), Positives = 82/117 (70%)
Frame = -2
Query: 1189 YGKEIEEILGFLGSRKDGGVSKENAFSKDSKPQRQNLLLSAT*NDKMSHLAKISLENPVM 1010
+GKEIEEIL LGSR +G +E+A + S+ QRQNLLLSAT N+K++HLA+ISLENPV
Sbjct: 198 FGKEIEEILDLLGSRTNGPTIREDAVT--SEFQRQNLLLSATLNEKVNHLAQISLENPVT 255
Query: 1009 IGIDETKVSTELSKRSGKHLKSIGSDVDDGSEFIGKLPNFSEADYNLPTQLIQRYVK 839
IG+D K+ K +H S+ DVD+ SE + K+ + S DY LP QL+QRYVK
Sbjct: 256 IGLDGKKMQ---PKPPLEHFGSVEFDVDEDSEKLHKIISPSNGDYKLPAQLVQRYVK 309
Score = 77.4 bits (189), Expect(2) = 2e-38
Identities = 53/119 (44%), Positives = 69/119 (57%), Gaps = 23/119 (19%)
Frame = -3
Query: 768 FLSVSCGSRLVILLSILRNLNERKAASQKVVVFFSTC--VDFYPKL--------ELHQK- 622
++ V CGSRLV+LLSIL++L ER+ ASQK+VVFFSTC VDF+ L LH +
Sbjct: 307 YVKVPCGSRLVVLLSILKHLFERE-ASQKIVVFFSTCDAVDFHYSLFSAFLWPANLHPET 365
Query: 621 ---------KAFRLHGNMEHEGRRTAFQGL-KQRNQLYCCAQMLLRGA*ISK--CYMYY 481
K F+LHGNM+HE RRT FQ K+++ L + RG K C + Y
Sbjct: 366 EDRQMFLRFKTFQLHGNMKHEDRRTTFQTFKKEKSALLLSTDVAARGLDFPKVRCIIQY 424
Score = 67.4 bits (163), Expect = 8e-09
Identities = 32/36 (88%), Positives = 34/36 (94%)
Frame = -1
Query: 1319 VHEILQKLLHHFH*IVPGYVMGGESRSKEKARLRKG 1212
V+EILQKLLH FH IVPGYVMGGE+RSKEKARLRKG
Sbjct: 121 VYEILQKLLHRFHWIVPGYVMGGENRSKEKARLRKG 156
>ref|NP_001169005.1| uncharacterized protein LOC100382837 [Zea mays]
gi|223974397|gb|ACN31386.1| unknown [Zea mays]
Length = 599
Score = 88.2 bits (217), Expect(3) = 5e-37
Identities = 56/120 (46%), Positives = 74/120 (61%), Gaps = 3/120 (2%)
Frame = -2
Query: 1189 YGKEIEEILGFLGSRKDGGVSKENAFSKDSKPQRQNLLLSAT*NDKMSHLAKISLENPVM 1010
+GK +E+IL LGSR +N K +RQNLLLSAT N+K++ LAKISL+NPVM
Sbjct: 194 FGKAVEDILEHLGSRNGATGQIKN---KGGHIRRQNLLLSATLNEKVNRLAKISLKNPVM 250
Query: 1009 IGIDETKVSTELSKRSGKHLKSIGSDVDDGSEFIGKLPNFSE---ADYNLPTQLIQRYVK 839
IG+D+ + S G + S+ SD DD E + K + E D+ LPTQL+QRYVK
Sbjct: 251 IGLDDQSKPSGKSNNVGNNHTSLLSDEDD--EILEKQNDLMEHAVDDFKLPTQLVQRYVK 308
Score = 68.6 bits (166), Expect(3) = 5e-37
Identities = 44/107 (41%), Positives = 63/107 (58%), Gaps = 21/107 (19%)
Frame = -3
Query: 768 FLSVSCGSRLVILLSILRNLNERKAASQKVVVFFSTC--VDFY------------PKLEL 631
++ VSCGSRL +LL IL++L ER+ SQKVVVFFSTC VDF+ P+ ++
Sbjct: 306 YVKVSCGSRLAVLLMILKSLFERQ-VSQKVVVFFSTCDSVDFHHTALSQLEWSSGPQRDM 364
Query: 630 HQK------KAFRLHGNMEHEGRRTAFQGL-KQRNQLYCCAQMLLRG 511
+K K FRLHGNME + R+ +F G +++ + + RG
Sbjct: 365 DKKQKFLSCKVFRLHGNMEQDDRKKSFLGFGSEKSAILVSTDIAARG 411
Score = 46.2 bits (108), Expect(3) = 5e-37
Identities = 22/28 (78%), Positives = 22/28 (78%)
Frame = -1
Query: 512 GLRFPNVTCIIQYDSPGEASEYVHRSER 429
GL FP V IIQYDSPGEASEYVHR R
Sbjct: 411 GLDFPKVKYIIQYDSPGEASEYVHRVGR 438
Score = 58.9 bits (141), Expect = 3e-06
Identities = 27/36 (75%), Positives = 32/36 (88%)
Frame = -1
Query: 1319 VHEILQKLLHHFH*IVPGYVMGGESRSKEKARLRKG 1212
V+ I Q+L+H FH IVPGYVMGGE+R+KEKARLRKG
Sbjct: 117 VYGIAQQLVHRFHWIVPGYVMGGENRAKEKARLRKG 152
>ref|XP_003533799.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
17-like [Glycine max]
Length = 596
Score = 105 bits (261), Expect(2) = 1e-35
Identities = 61/117 (52%), Positives = 78/117 (66%)
Frame = -2
Query: 1189 YGKEIEEILGFLGSRKDGGVSKENAFSKDSKPQRQNLLLSAT*NDKMSHLAKISLENPVM 1010
+GK+IEEIL LGSRK G +EN SK QRQNLLLSAT N+K++HLAK+SL+NPVM
Sbjct: 193 FGKDIEEILDLLGSRKKGHGDQENTVLTHSKIQRQNLLLSATLNEKVNHLAKMSLDNPVM 252
Query: 1009 IGIDETKVSTELSKRSGKHLKSIGSDVDDGSEFIGKLPNFSEADYNLPTQLIQRYVK 839
IG+D K+ + K L S SD D ++ K+P + DY +P QLIQRY+K
Sbjct: 253 IGLDGKKME---PISTIKRLDSSESDEDSEDKYSSKVP--TVGDYKVPIQLIQRYMK 304
Score = 72.4 bits (176), Expect(2) = 1e-35
Identities = 51/118 (43%), Positives = 68/118 (57%), Gaps = 22/118 (18%)
Frame = -3
Query: 768 FLSVSCGSRLVILLSILRNLNERKAASQKVVVFFSTC--VDF------------YPKLEL 631
++ V CGSRL +LLSIL++L ER+ SQKVV+FFSTC VDF YP+ E
Sbjct: 302 YMKVPCGSRLPVLLSILKHLFEREP-SQKVVLFFSTCDAVDFHYSLLSEFQFSSYPQTEG 360
Query: 630 HQK-----KAFRLHGNMEHEGRRTAFQGLK-QRNQLYCCAQMLLRGA*ISK--CYMYY 481
++ K FRLHGNM+ E RRT+FQ K +++ L + RG K C + Y
Sbjct: 361 VRQVFLGCKTFRLHGNMQQEDRRTSFQAFKTEKSALLLSTDVSARGLDFPKVRCIIQY 418
Score = 65.5 bits (158), Expect = 3e-08
Identities = 30/36 (83%), Positives = 33/36 (91%)
Frame = -1
Query: 1319 VHEILQKLLHHFH*IVPGYVMGGESRSKEKARLRKG 1212
V+EILQKLLH FH IVPGY+MGGE RSKEK+RLRKG
Sbjct: 116 VYEILQKLLHRFHWIVPGYIMGGEKRSKEKSRLRKG 151