BLASTX nr result
ID: Coptis25_contig00005111
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00005111
(388 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI40215.3| unnamed protein product [Vitis vinifera] 159 2e-37
ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containi... 152 3e-35
ref|XP_002530468.1| pentatricopeptide repeat-containing protein,... 130 8e-29
ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containi... 120 1e-25
gb|EAY94180.1| hypothetical protein OsI_15952 [Oryza sativa Indi... 112 4e-23
>emb|CBI40215.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 159 bits (403), Expect = 2e-37
Identities = 77/132 (58%), Positives = 100/132 (75%), Gaps = 4/132 (3%)
Frame = -3
Query: 386 TCPTPYYLLQHL----RSFYTTPIPLPQKDQSNQLFTSNARIQELGRMGKVDEARNLFDE 219
T TPY +++ R T +P+ + Q++ LF N RIQELGR+G+V+EAR +F+E
Sbjct: 6 TASTPYPVIRRFLCTFRCISTLSLPIQETPQTH-LFQCNTRIQELGRLGRVEEARRVFNE 64
Query: 218 MLHRDSFTWNSMINGYSQNGLIDEARALFDSFSGKNVRTWTAVVSGYAKSGRIEEARELF 39
M+ RD +WNSMINGYSQNG +DEAR LFD+F GKN+RTWT +++GYAK GRIEEARE+F
Sbjct: 65 MIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKEGRIEEAREVF 124
Query: 38 DMMPERNVVSWN 3
+ M ERNVVSWN
Sbjct: 125 ESMTERNVVSWN 136
Score = 62.8 bits (151), Expect = 3e-08
Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Frame = -3
Query: 284 NARIQELGRMGKVDEARNLFDEMLHRDSFTWNSMINGYSQNGLIDEARALFDSFSGKNVR 105
NA I + G + AR LFDEM ++ +WNS++ GY + EAR LFD +N
Sbjct: 136 NAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSV 195
Query: 104 TWTAVVSGYAKSGRIEEARELF-DMMPERNVVSW 6
+W ++SGY EA ++F M RN SW
Sbjct: 196 SWMVMISGYVHISDYWEAWDVFVKMCRTRNEYSW 229
>ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 1058
Score = 152 bits (384), Expect = 3e-35
Identities = 69/98 (70%), Positives = 84/98 (85%)
Frame = -3
Query: 296 LFTSNARIQELGRMGKVDEARNLFDEMLHRDSFTWNSMINGYSQNGLIDEARALFDSFSG 117
LF N RIQELGR+G+V+EAR +F+EM+ RD +WNSMINGYSQNG +DEAR LFD+F G
Sbjct: 171 LFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVG 230
Query: 116 KNVRTWTAVVSGYAKSGRIEEARELFDMMPERNVVSWN 3
KN+RTWT +++GYAK GRIEEARE+F+ M ERNVVSWN
Sbjct: 231 KNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWN 268
Score = 72.4 bits (176), Expect = 4e-11
Identities = 32/106 (30%), Positives = 62/106 (58%)
Frame = -3
Query: 323 LPQKDQSNQLFTSNARIQELGRMGKVDEARNLFDEMLHRDSFTWNSMINGYSQNGLIDEA 144
+P++++ ++ I + G++D+A L++ + + T +M+ Y+Q G I +A
Sbjct: 422 MPERNE----YSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGRIQKA 477
Query: 143 RALFDSFSGKNVRTWTAVVSGYAKSGRIEEARELFDMMPERNVVSW 6
R +FD NV W A+++GY ++G ++EA++LF MP +N SW
Sbjct: 478 RLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASW 523
Score = 71.2 bits (173), Expect = 8e-11
Identities = 33/102 (32%), Positives = 63/102 (61%)
Frame = -3
Query: 329 IPLPQKDQSNQLFTSNARIQELGRMGKVDEARNLFDEMLHRDSFTWNSMINGYSQNGLID 150
I L ++ + T A + ++G++ +AR +FDE+L+ + WN++I GY+QNG++
Sbjct: 447 IQLYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLK 506
Query: 149 EARALFDSFSGKNVRTWTAVVSGYAKSGRIEEARELFDMMPE 24
EA+ LF KN +W A+++G+ ++ EE+RE +++ E
Sbjct: 507 EAKDLFQKMPVKNSASWAAMIAGFVQN---EESREALELLIE 545
Score = 70.5 bits (171), Expect = 1e-10
Identities = 33/86 (38%), Positives = 56/86 (65%)
Frame = -3
Query: 260 RMGKVDEARNLFDEMLHRDSFTWNSMINGYSQNGLIDEARALFDSFSGKNVRTWTAVVSG 81
R G +D A + F+ M R+ ++W +MI ++Q G +D+A L++ + V T TA+++
Sbjct: 408 RNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTA 467
Query: 80 YAKSGRIEEARELFDMMPERNVVSWN 3
YA+ GRI++AR +FD + NVV+WN
Sbjct: 468 YAQVGRIQKARLIFDEILNPNVVAWN 493
Score = 68.2 bits (165), Expect = 7e-10
Identities = 30/93 (32%), Positives = 57/93 (61%)
Frame = -3
Query: 293 FTSNARIQELGRMGKVDEARNLFDEMLHRDSFTWNSMINGYSQNGLIDEARALFDSFSGK 114
+ N I + G V++ ++F + +D+ +WNS+I+G S+N ++D+AR +F+ +
Sbjct: 591 YVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKR 650
Query: 113 NVRTWTAVVSGYAKSGRIEEARELFDMMPERNV 15
+V +WTA++S Y ++G E A +LF M R +
Sbjct: 651 DVVSWTAIISAYVQAGHGEVALDLFLDMLARGI 683
Score = 58.9 bits (141), Expect = 4e-07
Identities = 31/85 (36%), Positives = 45/85 (52%)
Frame = -3
Query: 284 NARIQELGRMGKVDEARNLFDEMLHRDSFTWNSMINGYSQNGLIDEARALFDSFSGKNVR 105
NA I + G + AR LFDEM ++ +WNS++ GY + EAR LFD +N
Sbjct: 268 NAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSV 327
Query: 104 TWTAVVSGYAKSGRIEEARELFDMM 30
+W ++SGY EA ++F M
Sbjct: 328 SWMVMISGYVHISDYWEAWDVFVKM 352
>ref|XP_002530468.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223530013|gb|EEF31938.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 801
Score = 130 bits (328), Expect = 8e-29
Identities = 66/118 (55%), Positives = 85/118 (72%), Gaps = 2/118 (1%)
Frame = -3
Query: 350 RSFYTTPIPLPQKDQSNQ--LFTSNARIQELGRMGKVDEARNLFDEMLHRDSFTWNSMIN 177
R T PI + Q ++ Q LF N +IQELG++G+V +AR+LFD M RD+ +WNSMI+
Sbjct: 8 RCLSTVPISVSQTLRNPQAHLFQCNKKIQELGKLGRVKDARHLFDTMPQRDAVSWNSMIS 67
Query: 176 GYSQNGLIDEARALFDSFSGKNVRTWTAVVSGYAKSGRIEEARELFDMMPERNVVSWN 3
Y QN I +A++LFD+F KNVRTWT ++SGYAK+G IEEA F MPERNVVSWN
Sbjct: 68 VYLQNNKIPDAKSLFDAFEYKNVRTWTILLSGYAKAGLIEEAETFFRSMPERNVVSWN 125
Score = 75.1 bits (183), Expect = 6e-12
Identities = 35/96 (36%), Positives = 57/96 (59%)
Frame = -3
Query: 293 FTSNARIQELGRMGKVDEARNLFDEMLHRDSFTWNSMINGYSQNGLIDEARALFDSFSGK 114
++ + I + G++D+A L+++ + T ++I Y NG IDEA+ +FD
Sbjct: 285 YSLTSMIAAFSQRGRLDDAIALYEKDSKQGDATRTTIIAAYMHNGRIDEAKHIFDEIVNP 344
Query: 113 NVRTWTAVVSGYAKSGRIEEARELFDMMPERNVVSW 6
NV W A++ GYA++G +EEA+ +F MP RN VSW
Sbjct: 345 NVVAWNAMLGGYAQNGMLEEAKAIFLQMPVRNAVSW 380
Score = 75.1 bits (183), Expect = 6e-12
Identities = 33/97 (34%), Positives = 60/97 (61%)
Frame = -3
Query: 329 IPLPQKDQSNQLFTSNARIQELGRMGKVDEARNLFDEMLHRDSFTWNSMINGYSQNGLID 150
I L +KD T I G++DEA+++FDE+++ + WN+M+ GY+QNG+++
Sbjct: 304 IALYEKDSKQGDATRTTIIAAYMHNGRIDEAKHIFDEIVNPNVVAWNAMLGGYAQNGMLE 363
Query: 149 EARALFDSFSGKNVRTWTAVVSGYAKSGRIEEARELF 39
EA+A+F +N +W A++ G+ ++G +E +LF
Sbjct: 364 EAKAIFLQMPVRNAVSWAAMIGGFVQNGNGKEGLKLF 400
Score = 71.6 bits (174), Expect = 6e-11
Identities = 34/95 (35%), Positives = 57/95 (60%)
Frame = -3
Query: 287 SNARIQELGRMGKVDEARNLFDEMLHRDSFTWNSMINGYSQNGLIDEARALFDSFSGKNV 108
+ A + R G +D+A F+ M R+ ++ SMI +SQ G +D+A AL++ S +
Sbjct: 256 ATAILNAYARCGSLDDAFKFFESMPARNEYSLTSMIAAFSQRGRLDDAIALYEKDSKQGD 315
Query: 107 RTWTAVVSGYAKSGRIEEARELFDMMPERNVVSWN 3
T T +++ Y +GRI+EA+ +FD + NVV+WN
Sbjct: 316 ATRTTIIAAYMHNGRIDEAKHIFDEIVNPNVVAWN 350
Score = 59.7 bits (143), Expect = 2e-07
Identities = 32/90 (35%), Positives = 48/90 (53%)
Frame = -3
Query: 284 NARIQELGRMGKVDEARNLFDEMLHRDSFTWNSMINGYSQNGLIDEARALFDSFSGKNVR 105
NA + + G + AR F EM R+ +WNS+I GY ++GL+ EAR LFD ++
Sbjct: 125 NAMLAGFVQNGDLRNARKCFYEMPERNVSSWNSIITGYCKSGLMKEARELFDRMEERSSV 184
Query: 104 TWTAVVSGYAKSGRIEEARELFDMMPERNV 15
+W + SGY + + E +F MM V
Sbjct: 185 SWMVMASGYVEISQYREGWCVFLMMMNSGV 214
Score = 58.5 bits (140), Expect = 5e-07
Identities = 30/101 (29%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Frame = -3
Query: 329 IPLPQKDQSNQLFTSNARIQELGRMGKVDEARNLFDEMLHRDSFTWNSMINGYSQNGLID 150
+ + + QSN F N I + V++ ++F+ M RD+ +WNS+++G S N L++
Sbjct: 437 LSIKMRCQSNP-FVGNGLISMYAKCNSVEDVSHVFNSMNVRDTVSWNSLVSGLSWNYLLN 495
Query: 149 EARALFDSFSGKNVRTWTAVVSGYAKSGRIEEARELF-DMM 30
+A+ FD+ ++ +W A++S + + + E A +LF DM+
Sbjct: 496 DAQNTFDNMPTRDAVSWAAIISAHVHADQGEIAWQLFLDML 536
>ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 921
Score = 120 bits (300), Expect = 1e-25
Identities = 55/110 (50%), Positives = 79/110 (71%)
Frame = -3
Query: 332 PIPLPQKDQSNQLFTSNARIQELGRMGKVDEARNLFDEMLHRDSFTWNSMINGYSQNGLI 153
P+P+ ++ +ARI+EL R+G++ EAR +FD M HRD WNSMI+ Y +G++
Sbjct: 21 PLPVRSVHRALDKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGML 80
Query: 152 DEARALFDSFSGKNVRTWTAVVSGYAKSGRIEEARELFDMMPERNVVSWN 3
++AR LFD+ SG NVRT T ++SGYA+ GR+ +AR +FD MPERN V+WN
Sbjct: 81 EDARILFDAISGGNVRTATILLSGYARLGRVLDARRVFDGMPERNTVAWN 130
Score = 84.3 bits (207), Expect = 9e-15
Identities = 38/95 (40%), Positives = 62/95 (65%)
Frame = -3
Query: 290 TSNARIQELGRMGKVDEARNLFDEMLHRDSFTWNSMINGYSQNGLIDEARALFDSFSGKN 111
T+ + R+G+V +AR +FD M R++ WN+M++ Y QNG I AR LFD+ ++
Sbjct: 97 TATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRD 156
Query: 110 VRTWTAVVSGYAKSGRIEEARELFDMMPERNVVSW 6
V +W ++V+GY S ++ +A LF MP+RN+V+W
Sbjct: 157 VTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTW 191
Score = 79.7 bits (195), Expect = 2e-13
Identities = 36/95 (37%), Positives = 59/95 (62%)
Frame = -3
Query: 314 KDQSNQLFTSNARIQELGRMGKVDEARNLFDEMLHRDSFTWNSMINGYSQNGLIDEARAL 135
+D + + A + L R G++ EAR LF+++ +WN+MI GY QNG++DEA+ L
Sbjct: 315 RDPVKSIPSQTALLTGLARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKEL 374
Query: 134 FDSFSGKNVRTWTAVVSGYAKSGRIEEARELFDMM 30
FD +N +W +++GYA++GR EEA +L +
Sbjct: 375 FDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQAL 409
Score = 70.1 bits (170), Expect = 2e-10
Identities = 35/82 (42%), Positives = 53/82 (64%)
Frame = -3
Query: 248 VDEARNLFDEMLHRDSFTWNSMINGYSQNGLIDEARALFDSFSGKNVRTWTAVVSGYAKS 69
+D A FD M+ R+ +TW++MI S G ID A A++ K++ + TA+++G A+
Sbjct: 275 LDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLARC 334
Query: 68 GRIEEARELFDMMPERNVVSWN 3
GRI EAR LF+ +P+ VVSWN
Sbjct: 335 GRITEARILFEQIPDPIVVSWN 356
Score = 67.4 bits (163), Expect = 1e-09
Identities = 30/88 (34%), Positives = 53/88 (60%)
Frame = -3
Query: 293 FTSNARIQELGRMGKVDEARNLFDEMLHRDSFTWNSMINGYSQNGLIDEARALFDSFSGK 114
+ NA I G+ ++ R +F+ M +D+ +WNS I QN ++++AR +FD+ +
Sbjct: 454 YVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSR 513
Query: 113 NVRTWTAVVSGYAKSGRIEEARELFDMM 30
+V +WT ++S YA++ R +EA E F M
Sbjct: 514 DVVSWTTIISAYAQAERGDEAVEFFKTM 541
Score = 59.3 bits (142), Expect = 3e-07
Identities = 30/85 (35%), Positives = 47/85 (55%)
Frame = -3
Query: 284 NARIQELGRMGKVDEARNLFDEMLHRDSFTWNSMINGYSQNGLIDEARALFDSFSGKNVR 105
NA + + G + AR LFD M RD +WNSM+ GY + + +A LF +N+
Sbjct: 130 NAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLV 189
Query: 104 TWTAVVSGYAKSGRIEEARELFDMM 30
TWT ++SGY + + + ++F MM
Sbjct: 190 TWTVMISGYVRIEQHGKGWDIFRMM 214
>gb|EAY94180.1| hypothetical protein OsI_15952 [Oryza sativa Indica Group]
Length = 655
Score = 112 bits (279), Expect = 4e-23
Identities = 51/106 (48%), Positives = 74/106 (69%)
Frame = -3
Query: 320 PQKDQSNQLFTSNARIQELGRMGKVDEARNLFDEMLHRDSFTWNSMINGYSQNGLIDEAR 141
PQ+ + +F SN I E R G+V AR +FDEM R+ FTWN M++G +N ++ EAR
Sbjct: 26 PQRHAAGDVFQSNTAINEHFRAGRVAAARRVFDEMSERNVFTWNCMVSGLIRNRMLAEAR 85
Query: 140 ALFDSFSGKNVRTWTAVVSGYAKSGRIEEARELFDMMPERNVVSWN 3
+FD+ +N +W A+++GYA+ GR+ EARELF+ +P+RNVVSWN
Sbjct: 86 KVFDAMPVRNSVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWN 131
Score = 80.5 bits (197), Expect = 1e-13
Identities = 35/78 (44%), Positives = 53/78 (67%)
Frame = -3
Query: 260 RMGKVDEARNLFDEMLHRDSFTWNSMINGYSQNGLIDEARALFDSFSGKNVRTWTAVVSG 81
R G+V EAR LF+ + R+ +WN+M++GY++NG++ AR LFD ++ +W ++SG
Sbjct: 108 RCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISG 167
Query: 80 YAKSGRIEEARELFDMMP 27
Y K + EARELFD MP
Sbjct: 168 YIKRKHVREARELFDSMP 185
Score = 73.6 bits (179), Expect = 2e-11
Identities = 33/107 (30%), Positives = 59/107 (55%)
Frame = -3
Query: 323 LPQKDQSNQLFTSNARIQELGRMGKVDEARNLFDEMLHRDSFTWNSMINGYSQNGLIDEA 144
+P+KD ++ +Q G VD A +F +M HRD+ WN+M++G+ +N +D+A
Sbjct: 246 MPEKDVLSRTAIMRGYLQN----GSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDA 301
Query: 143 RALFDSFSGKNVRTWTAVVSGYAKSGRIEEARELFDMMPERNVVSWN 3
LF ++ +W A++ GY + G ++ A F P ++ +SWN
Sbjct: 302 LKLFSEMPDRDQISWHAILQGYVQQGDMDSANVWFPRAPNKDAISWN 348
Score = 68.9 bits (167), Expect = 4e-10
Identities = 34/94 (36%), Positives = 56/94 (59%)
Frame = -3
Query: 284 NARIQELGRMGKVDEARNLFDEMLHRDSFTWNSMINGYSQNGLIDEARALFDSFSGKNVR 105
NA + +G + A LF +M R+ +WN MI GY++ G + A+ LFD K+V
Sbjct: 193 NALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVL 252
Query: 104 TWTAVVSGYAKSGRIEEARELFDMMPERNVVSWN 3
+ TA++ GY ++G ++ A ++F MP R+ V+WN
Sbjct: 253 SRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWN 286
Score = 68.9 bits (167), Expect = 4e-10
Identities = 30/94 (31%), Positives = 54/94 (57%)
Frame = -3
Query: 284 NARIQELGRMGKVDEARNLFDEMLHRDSFTWNSMINGYSQNGLIDEARALFDSFSGKNVR 105
N I R G + A+ LFDEM +D + +++ GY QNG +D A +F ++
Sbjct: 224 NVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTV 283
Query: 104 TWTAVVSGYAKSGRIEEARELFDMMPERNVVSWN 3
W ++ G+ ++ R+++A +LF MP+R+ +SW+
Sbjct: 284 AWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWH 317
Score = 66.2 bits (160), Expect = 3e-09
Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 31/123 (25%)
Frame = -3
Query: 284 NARIQELGRMGKVDEARNLFDEMLHRDSFTWNSMINGYSQNGLIDEARALFDSFSG---- 117
NA + R G V AR LFD M RD +W +MI+GY + + EAR LFDS
Sbjct: 131 NAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPPTS 190
Query: 116 ---------------------------KNVRTWTAVVSGYAKSGRIEEARELFDMMPERN 18
+N +W +++GYA++G + A+ LFD MPE++
Sbjct: 191 VCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKD 250
Query: 17 VVS 9
V+S
Sbjct: 251 VLS 253
Score = 55.1 bits (131), Expect = 6e-06
Identities = 25/81 (30%), Positives = 41/81 (50%)
Frame = -3
Query: 284 NARIQELGRMGKVDEARNLFDEMLHRDSFTWNSMINGYSQNGLIDEARALFDSFSGKNVR 105
N + R ++D+A LF EM RD +W++++ GY Q G +D A F K+
Sbjct: 286 NTMMDGFVRNDRLDDALKLFSEMPDRDQISWHAILQGYVQQGDMDSANVWFPRAPNKDAI 345
Query: 104 TWTAVVSGYAKSGRIEEAREL 42
+W ++SGY G + E+
Sbjct: 346 SWNTLISGYKDEGALSLLSEM 366