BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005096
         (429 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002313663.1| predicted protein [Populus trichocarpa] gi|1...    59   9e-11
sp|P41099.1|RLA2_PARAR RecName: Full=60S acidic ribosomal protei...    62   2e-10
gb|ABA40434.1| 60s acidic ribosomal protein-like protein [Solanu...    61   6e-10
ref|XP_002264645.1| PREDICTED: 60S acidic ribosomal protein P2B ...    59   1e-09
gb|AGE46033.1| 60S acidic ribosomal protein P2B [Elaeis guineensis]    60   1e-09

>ref|XP_002313663.1| predicted protein [Populus trichocarpa] gi|118484510|gb|ABK94130.1|
           unknown [Populus trichocarpa]
           gi|118485202|gb|ABK94462.1| unknown [Populus
           trichocarpa] gi|118487376|gb|ABK95516.1| unknown
           [Populus trichocarpa] gi|118488119|gb|ABK95879.1|
           unknown [Populus trichocarpa]
           gi|222850071|gb|EEE87618.1| predicted protein [Populus
           trichocarpa]
          Length = 113

 Score = 58.5 bits (140), Expect(2) = 9e-11
 Identities = 31/48 (64%), Positives = 35/48 (72%)
 Frame = -1

Query: 423 MKVVXXXXXXXLGGNNEPSADHIKTILASVGADADDDKIELLLSQVKG 280
           MKVV       LGGN  P+A+ +K IL SVGADADDD+IELLLS VKG
Sbjct: 1   MKVVAAYLLAVLGGNTCPTAEDLKNILGSVGADADDDRIELLLSSVKG 48



 Score = 32.7 bits (73), Expect(2) = 9e-11
 Identities = 23/65 (35%), Positives = 24/65 (36%)
 Frame = -3

Query: 196 KDITEVIASGREKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMG 17
           KDITE+IASGREKL                                        SDDDMG
Sbjct: 49  KDITELIASGREKLASVPSGGGVAVSAGAAPAAAGGAAPAAEAKKEEKVEEKEESDDDMG 108

Query: 16  FGLFD 2
           F LFD
Sbjct: 109 FSLFD 113


>sp|P41099.1|RLA2_PARAR RecName: Full=60S acidic ribosomal protein P2
           gi|551267|emb|CAA55047.1| 60s acidic ribosomal protein
           P2 [Parthenium argentatum]
          Length = 114

 Score = 62.4 bits (150), Expect(2) = 2e-10
 Identities = 32/48 (66%), Positives = 37/48 (77%)
 Frame = -1

Query: 423 MKVVXXXXXXXLGGNNEPSADHIKTILASVGADADDDKIELLLSQVKG 280
           MKV+       LGGN  P+ + +K+ILASVGADADDDKIELLLSQVKG
Sbjct: 1   MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKG 48



 Score = 27.7 bits (60), Expect(2) = 2e-10
 Identities = 12/14 (85%), Positives = 14/14 (100%)
 Frame = -3

Query: 196 KDITEVIASGREKL 155
           KDITE+IASGRE+L
Sbjct: 49  KDITELIASGRERL 62


>gb|ABA40434.1| 60s acidic ribosomal protein-like protein [Solanum tuberosum]
          Length = 115

 Score = 60.8 bits (146), Expect(2) = 6e-10
 Identities = 32/48 (66%), Positives = 36/48 (75%)
 Frame = -1

Query: 423 MKVVXXXXXXXLGGNNEPSADHIKTILASVGADADDDKIELLLSQVKG 280
           MKV+       LGGN  PSA  +K ILASVGA+ADDD+IELLLSQVKG
Sbjct: 1   MKVIASYLLAVLGGNTSPSAADLKKILASVGAEADDDRIELLLSQVKG 48



 Score = 27.7 bits (60), Expect(2) = 6e-10
 Identities = 12/14 (85%), Positives = 14/14 (100%)
 Frame = -3

Query: 196 KDITEVIASGREKL 155
           KDITE+IA+GREKL
Sbjct: 49  KDITELIAAGREKL 62


>ref|XP_002264645.1| PREDICTED: 60S acidic ribosomal protein P2B [Vitis vinifera]
           gi|296090429|emb|CBI40248.3| unnamed protein product
           [Vitis vinifera]
          Length = 115

 Score = 58.5 bits (140), Expect(2) = 1e-09
 Identities = 30/48 (62%), Positives = 35/48 (72%)
 Frame = -1

Query: 423 MKVVXXXXXXXLGGNNEPSADHIKTILASVGADADDDKIELLLSQVKG 280
           MKV+       LGGN  P AD +K+IL SVGA+ADDD IELLLS+VKG
Sbjct: 1   MKVIAAYLLAALGGNGSPCADDLKSILGSVGAEADDDGIELLLSEVKG 48



 Score = 28.9 bits (63), Expect(2) = 1e-09
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = -3

Query: 196 KDITEVIASGREKL 155
           KDITE+IASGREKL
Sbjct: 49  KDITELIASGREKL 62


>gb|AGE46033.1| 60S acidic ribosomal protein P2B [Elaeis guineensis]
          Length = 112

 Score = 60.1 bits (144), Expect(2) = 1e-09
 Identities = 32/48 (66%), Positives = 36/48 (75%)
 Frame = -1

Query: 423 MKVVXXXXXXXLGGNNEPSADHIKTILASVGADADDDKIELLLSQVKG 280
           MKVV       LGGN  PSAD +K IL SVGA+ADDD+IELLLS+VKG
Sbjct: 1   MKVVAAYLLAVLGGNTCPSADDLKDILGSVGAEADDDRIELLLSEVKG 48



 Score = 27.3 bits (59), Expect(2) = 1e-09
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = -3

Query: 196 KDITEVIASGREK 158
           KDITE+IASGREK
Sbjct: 49  KDITELIASGREK 61