BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005086
         (974 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274081.1| PREDICTED: uncharacterized protein LOC100257...    64   6e-20
ref|XP_003539635.1| PREDICTED: RNA-binding protein 28-like [Glyc...    57   1e-16
ref|XP_003541606.1| PREDICTED: RNA-binding protein 28-like [Glyc...    56   9e-16
ref|XP_002313773.1| predicted protein [Populus trichocarpa] gi|2...    60   3e-15
ref|XP_003590983.1| Eukaryotic translation initiation factor 3 s...    58   1e-14

>ref|XP_002274081.1| PREDICTED: uncharacterized protein LOC100257200 [Vitis vinifera]
          Length = 972

 Score = 64.3 bits (155), Expect(2) = 6e-20
 Identities = 26/40 (65%), Positives = 37/40 (92%)
 Frame = +1

Query: 559  VVDKLDLLIEQYRSKFSQKKQNTSEGEKQGSRQLKRWFES 678
            ++DKLD+L+EQYR+KFSQ+  + ++G+KQGSRQLKRWF+S
Sbjct: 933  ILDKLDMLVEQYRAKFSQQTDDKTDGQKQGSRQLKRWFQS 972



 Score = 60.1 bits (144), Expect(2) = 6e-20
 Identities = 53/163 (32%), Positives = 76/163 (46%), Gaps = 1/163 (0%)
 Frame = +3

Query: 3    EFALDNVQTLKVRKFKLQA-QQDNHTSAEDEHQNTTPEISDTRPNYXXXXXXXXXXXXGH 179
            EFALDN+QTL+ R+ KL+A QQ NH   ED   N  P   +  PN              +
Sbjct: 755  EFALDNIQTLRQRRAKLEAYQQINHGYPEDLQPNDDPNTPEASPN--KKMKSRKRKSRDN 812

Query: 180  DVSSETLVSSQGDKGEGKFPKGATEKDLSVNRKLKGNPSKETKGKFASKDKTVGLTQNSN 359
            D   +T   ++GD+ E K  KGA        +K K NP+KE +     KDK   L   +N
Sbjct: 813  DGPLKTSEPNEGDEPEDKVIKGAVIDRHGAAKKHKINPAKEKQ-----KDKRKKL---NN 864

Query: 360  SNGEGAETNVGKSVTGANVGDGTLELRSKQNMRAVFKKRKLDD 488
            S+G G + +  K +   +        +S +    + KKRKL +
Sbjct: 865  SHGIG-KPDDEKPLKAESTISKARNSKSSEESNMLPKKRKLQE 906


>ref|XP_003539635.1| PREDICTED: RNA-binding protein 28-like [Glycine max]
          Length = 958

 Score = 57.4 bits (137), Expect(2) = 1e-16
 Identities = 24/41 (58%), Positives = 35/41 (85%)
 Frame = +1

Query: 556  EVVDKLDLLIEQYRSKFSQKKQNTSEGEKQGSRQLKRWFES 678
            +VVDKLD+L+EQY+SKFS K    ++GEK+ S+QL++WF+S
Sbjct: 918  DVVDKLDMLVEQYKSKFSHKGSLENDGEKRHSKQLRKWFQS 958



 Score = 55.8 bits (133), Expect(2) = 1e-16
 Identities = 49/168 (29%), Positives = 70/168 (41%), Gaps = 6/168 (3%)
 Frame = +3

Query: 3    EFALDNVQTLKVRKFKLQAQQDNHTSAEDEHQNTTP-EISDTRPNYXXXXXXXXXXXXGH 179
            EFALDNVQTLK+RK KLQ+Q        +   N  P  +   +P               H
Sbjct: 742  EFALDNVQTLKLRKAKLQSQHQTPQVDNNAMDNDNPGTVEGCKP-----VKDRKRKSREH 796

Query: 180  D-VSSETLVSSQGDKG----EGKFPKGATEKDLSVNRKLKGNPSKETKGKFASKDKTVGL 344
            D  + E+++++ G+ G     GK P+G   K      + KGN     K K A K+     
Sbjct: 797  DEPAKESVLNTNGESGVAVANGKSPQGHKSK------RQKGN----NKSKKALKENREAA 846

Query: 345  TQNSNSNGEGAETNVGKSVTGANVGDGTLELRSKQNMRAVFKKRKLDD 488
                  N E    N G S+ G N    +   +S       F+KRK+ +
Sbjct: 847  LSMKPKNNENGHNNGGASLEGQNTATDSNRRKSGNKDDVGFRKRKMQN 894


>ref|XP_003541606.1| PREDICTED: RNA-binding protein 28-like [Glycine max]
          Length = 956

 Score = 56.2 bits (134), Expect(2) = 9e-16
 Identities = 24/41 (58%), Positives = 34/41 (82%)
 Frame = +1

Query: 556  EVVDKLDLLIEQYRSKFSQKKQNTSEGEKQGSRQLKRWFES 678
            +V DKLD+LIEQYRSKFS K    ++GE++ S+QL++WF+S
Sbjct: 916  DVGDKLDMLIEQYRSKFSHKGSQENDGERKPSKQLRKWFQS 956



 Score = 53.9 bits (128), Expect(2) = 9e-16
 Identities = 54/192 (28%), Positives = 88/192 (45%), Gaps = 12/192 (6%)
 Frame = +3

Query: 3    EFALDNVQTLKVRKFKLQAQ----QDNHTSAEDEHQNTTPEISDTRPNYXXXXXXXXXXX 170
            EFALDNVQTLK+RK KLQ+Q    QD++ + +++   T   +   +P             
Sbjct: 741  EFALDNVQTLKLRKAKLQSQLQAPQDDNNAMDNDKPGT---VEGHKP-----VKNRKRKS 792

Query: 171  XGHD-VSSETLVSSQGDKG----EGKFPKGATEKDLSVNRKLKGNPSKETKGKFASKDKT 335
              HD  + E+ +++ G+ G     GK P+G   K      + KGN     K K A K+  
Sbjct: 793  QEHDKPAMESALNTNGELGVAVSNGKSPQGHKSK------RQKGN----NKSKKALKENP 842

Query: 336  VGLTQNSNSNGEGAETNVGKSVTGANVGDGTLELRSKQNMRAVFKKRKL---DDVVDSKQ 506
              L+    +N E  ++N G S+ G N    +   +S       F+KRK+   +     K 
Sbjct: 843  EALSMKPKNN-ENGQSNGGASLEGQNTATYSNRRKSGNREDWGFRKRKIQNQEQEAGQKV 901

Query: 507  WDKKSEEKEDEI 542
              K+ ++ +D +
Sbjct: 902  SKKRPKKNKDSV 913


>ref|XP_002313773.1| predicted protein [Populus trichocarpa] gi|222850181|gb|EEE87728.1|
            predicted protein [Populus trichocarpa]
          Length = 974

 Score = 60.5 bits (145), Expect(2) = 3e-15
 Identities = 26/41 (63%), Positives = 35/41 (85%)
 Frame = +1

Query: 556  EVVDKLDLLIEQYRSKFSQKKQNTSEGEKQGSRQLKRWFES 678
            +V DKLD+LIEQY+SKFS++  +  EGEKQ ++QLKRWF+S
Sbjct: 934  DVADKLDMLIEQYKSKFSKQTADKPEGEKQANKQLKRWFQS 974



 Score = 47.8 bits (112), Expect(2) = 3e-15
 Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 1/177 (0%)
 Frame = +3

Query: 6    FALDNVQTLKVRKFKLQA-QQDNHTSAEDEHQNTTPEISDTRPNYXXXXXXXXXXXXGHD 182
            FALDNVQTLK+RK KLQ  QQ+ H   +D  +N   +  +  P+                
Sbjct: 751  FALDNVQTLKLRKAKLQVQQQETHKDFQDTQENDESQTPNAIPSQKEMSRKRKSRVENRA 810

Query: 183  VSSETLVSSQGDKGEGKFPKGATEKDLSVNRKLKGNPSKETKGKFASKDKTVGLTQNSNS 362
            V      S++ D+ + K     + K+ +  +K K NP  E   + ++KDK     Q +  
Sbjct: 811  VKDPE--SNRMDEVKNKDSYRTSLKEQTAKKK-KSNPGAEDI-QTSAKDKRESREQKAKG 866

Query: 363  NGEGAETNVGKSVTGANVGDGTLELRSKQNMRAVFKKRKLDDVVDSKQWDKKSEEKE 533
            + +  + + G+   G N  +    ++  +       KRK  +  +  +  K SE+++
Sbjct: 867  S-QHKQKDEGRKSDGGNSVNSEKIVKPFKEADLWLTKRKRPNQTEENKGGKSSEKRK 922


>ref|XP_003590983.1| Eukaryotic translation initiation factor 3 subunit G [Medicago
            truncatula] gi|355480031|gb|AES61234.1| Eukaryotic
            translation initiation factor 3 subunit G [Medicago
            truncatula]
          Length = 962

 Score = 58.2 bits (139), Expect(2) = 1e-14
 Identities = 25/41 (60%), Positives = 34/41 (82%)
 Frame = +1

Query: 556  EVVDKLDLLIEQYRSKFSQKKQNTSEGEKQGSRQLKRWFES 678
            + VDKLD+LIEQYRSKFS K    ++GEK+ S+QL++WF+S
Sbjct: 922  DTVDKLDMLIEQYRSKFSHKGSQGNDGEKKQSKQLRKWFQS 962



 Score = 48.1 bits (113), Expect(2) = 1e-14
 Identities = 41/182 (22%), Positives = 71/182 (39%), Gaps = 2/182 (1%)
 Frame = +3

Query: 3    EFALDNVQTLKVRKFKLQAQQDNHTSAEDEHQNTTPEISDTRPNYXXXXXXXXXXXXGHD 182
            EFALDN+Q LK+R  KLQ QQ    +    ++N  P                      H 
Sbjct: 743  EFALDNIQKLKLRNEKLQYQQRAPHNGNSRNENDKP----NNAGVYTHGTDRKRKSQEHG 798

Query: 183  VSSETLVSSQGDKGEGKFPKGATEKDLSVNRKLKGNPSKETKGKFASKDKTVGLTQNSNS 362
              ++ L      +  G+ P G + +    +++ KG+P        +SK+     +     
Sbjct: 799  KPAKDLAPDSNSEHGGRVPNGKSPQG-GKSKRQKGDPKSTNTDVISSKESPKASSARKLK 857

Query: 363  NGEGAETNVGKSVTGANVGDGTLELRSKQNMRAVFKKRKL--DDVVDSKQWDKKSEEKED 536
            N +  + +  K   G N    +    S +   AVF KRK+   +    K   K+ ++ +D
Sbjct: 858  NNQDGQNHGAKLHEGKNSSIDSNRKISGKKEDAVFGKRKMHNQEQAGEKVSRKRPKKNKD 917

Query: 537  EI 542
             +
Sbjct: 918  SV 919