BLASTX nr result
ID: Coptis25_contig00005064
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00005064
(1682 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003632558.1| PREDICTED: probable pre-mRNA-splicing factor... 893 0.0
ref|XP_002268542.1| PREDICTED: probable pre-mRNA-splicing factor... 893 0.0
emb|CAN82460.1| hypothetical protein VITISV_005515 [Vitis vinifera] 892 0.0
ref|XP_003544395.1| PREDICTED: probable pre-mRNA-splicing factor... 887 0.0
ref|XP_003549455.1| PREDICTED: probable pre-mRNA-splicing factor... 884 0.0
>ref|XP_003632558.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA
helicase-like [Vitis vinifera]
Length = 1172
Score = 893 bits (2307), Expect = 0.0
Identities = 453/560 (80%), Positives = 482/560 (86%)
Frame = +1
Query: 1 SQLASRRIPNAKDVVKRGQDVFVKVISMTGQKMSLSMRDVDQTTGKDLIPMKKRPDDDAS 180
SQ+A+RR+ NAKDVVKR Q+V+VKVIS++GQK+SLSMRDVDQ TG+DLIP+KK +DDA
Sbjct: 252 SQIATRRVGNAKDVVKRDQEVYVKVISVSGQKLSLSMRDVDQNTGRDLIPLKKSLEDDAL 311
Query: 181 RVNPQSSNQGPTSRTGLSGIRITEDDGPSSSRRPLKRMSSPEKWEAKQLMAAGVMDIREH 360
R NP +NQGP SRTGLSGIRI E++ + SRRPLKRMSSPEKWEAKQL+A+GV+DIRE
Sbjct: 312 RTNPSGANQGPVSRTGLSGIRIVEENDAAPSRRPLKRMSSPEKWEAKQLIASGVLDIREF 371
Query: 361 PMYDEDEDGXXXXXXXXXXXXXXXXXXXXPAFLQGQSRYSIDMSPVKIFKNPEGXXXXXX 540
PMYD++ DG PAFLQGQSRYS+DMSPVKIFKNPEG
Sbjct: 372 PMYDDEGDGMLYQEEGAEEELEIEMNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLSRAA 431
Query: 541 XXXXXXIKXXXXXXXXXXXTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMP 720
IK TMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMP
Sbjct: 432 ALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMP 491
Query: 721 EWKKDAYGKALTFGQRTKLSIQEQRQILPIYKLKKELVLAVHDNQVLVVIGETGSGKTTQ 900
EWKKDA+GKALTFGQR+KLSIQEQRQ LPIYKLKKELV AVHDNQVLVVIGETGSGKTTQ
Sbjct: 492 EWKKDAFGKALTFGQRSKLSIQEQRQSLPIYKLKKELVQAVHDNQVLVVIGETGSGKTTQ 551
Query: 901 VTQYLAEAGYTTRGKIGCTQPXXXXXXXXXXXXXEEFGCHLGEEVGYAIRFEYCTGPETV 1080
VTQYLAEAGYTTRGKIGCTQP EEFGC LGEEVGYAIRFE CTGP+TV
Sbjct: 552 VTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTV 611
Query: 1081 IKYMTDGMLLSEILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLVQRRPELRLIVTS 1260
IKYMTDGMLL EILID+NLSQYSVIMLDEAHERTIHTDVLFGLLK LV+RRP+LRLIVTS
Sbjct: 612 IKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKHLVKRRPDLRLIVTS 671
Query: 1261 ATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDIL 1440
ATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDA+LITVLQIHLTEPEGDIL
Sbjct: 672 ATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDIL 731
Query: 1441 LFLTGQEEIDHACQSLYERMKGLGKSVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVV 1620
LFLTGQEEIDHACQSLYERMKGLGK+VPELIILPVYSALPSEMQSRIFDPAPPGKRKVVV
Sbjct: 732 LFLTGQEEIDHACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVV 791
Query: 1621 ATNIAEASLTIDGIFYVIDP 1680
ATNIAEASLTIDGIFYVIDP
Sbjct: 792 ATNIAEASLTIDGIFYVIDP 811
>ref|XP_002268542.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA
helicase-like isoform 2 [Vitis vinifera]
Length = 1175
Score = 893 bits (2307), Expect = 0.0
Identities = 453/560 (80%), Positives = 482/560 (86%)
Frame = +1
Query: 1 SQLASRRIPNAKDVVKRGQDVFVKVISMTGQKMSLSMRDVDQTTGKDLIPMKKRPDDDAS 180
SQ+A+RR+ NAKDVVKR Q+V+VKVIS++GQK+SLSMRDVDQ TG+DLIP+KK +DDA
Sbjct: 255 SQIATRRVGNAKDVVKRDQEVYVKVISVSGQKLSLSMRDVDQNTGRDLIPLKKSLEDDAL 314
Query: 181 RVNPQSSNQGPTSRTGLSGIRITEDDGPSSSRRPLKRMSSPEKWEAKQLMAAGVMDIREH 360
R NP +NQGP SRTGLSGIRI E++ + SRRPLKRMSSPEKWEAKQL+A+GV+DIRE
Sbjct: 315 RTNPSGANQGPVSRTGLSGIRIVEENDAAPSRRPLKRMSSPEKWEAKQLIASGVLDIREF 374
Query: 361 PMYDEDEDGXXXXXXXXXXXXXXXXXXXXPAFLQGQSRYSIDMSPVKIFKNPEGXXXXXX 540
PMYD++ DG PAFLQGQSRYS+DMSPVKIFKNPEG
Sbjct: 375 PMYDDEGDGMLYQEEGAEEELEIEMNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLSRAA 434
Query: 541 XXXXXXIKXXXXXXXXXXXTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMP 720
IK TMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMP
Sbjct: 435 ALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMP 494
Query: 721 EWKKDAYGKALTFGQRTKLSIQEQRQILPIYKLKKELVLAVHDNQVLVVIGETGSGKTTQ 900
EWKKDA+GKALTFGQR+KLSIQEQRQ LPIYKLKKELV AVHDNQVLVVIGETGSGKTTQ
Sbjct: 495 EWKKDAFGKALTFGQRSKLSIQEQRQSLPIYKLKKELVQAVHDNQVLVVIGETGSGKTTQ 554
Query: 901 VTQYLAEAGYTTRGKIGCTQPXXXXXXXXXXXXXEEFGCHLGEEVGYAIRFEYCTGPETV 1080
VTQYLAEAGYTTRGKIGCTQP EEFGC LGEEVGYAIRFE CTGP+TV
Sbjct: 555 VTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTV 614
Query: 1081 IKYMTDGMLLSEILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLVQRRPELRLIVTS 1260
IKYMTDGMLL EILID+NLSQYSVIMLDEAHERTIHTDVLFGLLK LV+RRP+LRLIVTS
Sbjct: 615 IKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKHLVKRRPDLRLIVTS 674
Query: 1261 ATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDIL 1440
ATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDA+LITVLQIHLTEPEGDIL
Sbjct: 675 ATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDIL 734
Query: 1441 LFLTGQEEIDHACQSLYERMKGLGKSVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVV 1620
LFLTGQEEIDHACQSLYERMKGLGK+VPELIILPVYSALPSEMQSRIFDPAPPGKRKVVV
Sbjct: 735 LFLTGQEEIDHACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVV 794
Query: 1621 ATNIAEASLTIDGIFYVIDP 1680
ATNIAEASLTIDGIFYVIDP
Sbjct: 795 ATNIAEASLTIDGIFYVIDP 814
>emb|CAN82460.1| hypothetical protein VITISV_005515 [Vitis vinifera]
Length = 1162
Score = 892 bits (2305), Expect = 0.0
Identities = 453/560 (80%), Positives = 481/560 (85%)
Frame = +1
Query: 1 SQLASRRIPNAKDVVKRGQDVFVKVISMTGQKMSLSMRDVDQTTGKDLIPMKKRPDDDAS 180
SQ+A+RR+ NAKDVVKR Q+V+VKVIS++GQK+SLSMRDVDQ TG+DLIP+KK +DDA
Sbjct: 264 SQIATRRVGNAKDVVKRDQEVYVKVISVSGQKLSLSMRDVDQNTGRDLIPLKKSLEDDAL 323
Query: 181 RVNPQSSNQGPTSRTGLSGIRITEDDGPSSSRRPLKRMSSPEKWEAKQLMAAGVMDIREH 360
R NP NQGP SRTGLSGIRI E++ + SRRPLKRMSSPEKWEAKQL+A+GV+DIRE
Sbjct: 324 RTNPSGXNQGPVSRTGLSGIRIVEENDAAPSRRPLKRMSSPEKWEAKQLIASGVLDIREF 383
Query: 361 PMYDEDEDGXXXXXXXXXXXXXXXXXXXXPAFLQGQSRYSIDMSPVKIFKNPEGXXXXXX 540
PMYD++ DG PAFLQGQSRYS+DMSPVKIFKNPEG
Sbjct: 384 PMYDDEGDGMLYQEEGAEEELEIEMNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLSRAA 443
Query: 541 XXXXXXIKXXXXXXXXXXXTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMP 720
IK TMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMP
Sbjct: 444 ALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMP 503
Query: 721 EWKKDAYGKALTFGQRTKLSIQEQRQILPIYKLKKELVLAVHDNQVLVVIGETGSGKTTQ 900
EWKKDA+GKALTFGQR+KLSIQEQRQ LPIYKLKKELV AVHDNQVLVVIGETGSGKTTQ
Sbjct: 504 EWKKDAFGKALTFGQRSKLSIQEQRQSLPIYKLKKELVQAVHDNQVLVVIGETGSGKTTQ 563
Query: 901 VTQYLAEAGYTTRGKIGCTQPXXXXXXXXXXXXXEEFGCHLGEEVGYAIRFEYCTGPETV 1080
VTQYLAEAGYTTRGKIGCTQP EEFGC LGEEVGYAIRFE CTGP+TV
Sbjct: 564 VTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTV 623
Query: 1081 IKYMTDGMLLSEILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLVQRRPELRLIVTS 1260
IKYMTDGMLL EILID+NLSQYSVIMLDEAHERTIHTDVLFGLLK LV+RRP+LRLIVTS
Sbjct: 624 IKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKHLVKRRPDLRLIVTS 683
Query: 1261 ATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDIL 1440
ATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDA+LITVLQIHLTEPEGDIL
Sbjct: 684 ATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDIL 743
Query: 1441 LFLTGQEEIDHACQSLYERMKGLGKSVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVV 1620
LFLTGQEEIDHACQSLYERMKGLGK+VPELIILPVYSALPSEMQSRIFDPAPPGKRKVVV
Sbjct: 744 LFLTGQEEIDHACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVV 803
Query: 1621 ATNIAEASLTIDGIFYVIDP 1680
ATNIAEASLTIDGIFYVIDP
Sbjct: 804 ATNIAEASLTIDGIFYVIDP 823
>ref|XP_003544395.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA
helicase-like [Glycine max]
Length = 1203
Score = 887 bits (2291), Expect = 0.0
Identities = 449/560 (80%), Positives = 479/560 (85%)
Frame = +1
Query: 1 SQLASRRIPNAKDVVKRGQDVFVKVISMTGQKMSLSMRDVDQTTGKDLIPMKKRPDDDAS 180
SQ+A+RRI NAKDVVKR Q+V+VKVIS++GQK+SLSMRDVDQ TGKDL+P+KK +DDA
Sbjct: 283 SQMATRRITNAKDVVKRDQEVYVKVISVSGQKLSLSMRDVDQHTGKDLLPLKKSSEDDAM 342
Query: 181 RVNPQSSNQGPTSRTGLSGIRITEDDGPSSSRRPLKRMSSPEKWEAKQLMAAGVMDIREH 360
R+NPQ S GP +RTGLSGIRI E+D SSRRPLKRMSSPE+WEAKQL+A+GV+ + E+
Sbjct: 343 RMNPQDSKGGPAARTGLSGIRIVEEDDAGSSRRPLKRMSSPERWEAKQLIASGVLSVSEY 402
Query: 361 PMYDEDEDGXXXXXXXXXXXXXXXXXXXXPAFLQGQSRYSIDMSPVKIFKNPEGXXXXXX 540
P YD++ DG PAFLQGQSRYS+DMSPVKIFKNPEG
Sbjct: 403 PTYDDEGDGLLYQEEGAEEELEIELNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAA 462
Query: 541 XXXXXXIKXXXXXXXXXXXTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMP 720
IK TMLDSIPKDLNRPWEDPMPE+GERHLAQELRGVGLSAYDMP
Sbjct: 463 ALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMP 522
Query: 721 EWKKDAYGKALTFGQRTKLSIQEQRQILPIYKLKKELVLAVHDNQVLVVIGETGSGKTTQ 900
EWKKDAYGK +TFGQR+KLSIQEQRQ LPIYKLKKEL+ AVHDNQVLVVIGETGSGKTTQ
Sbjct: 523 EWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQ 582
Query: 901 VTQYLAEAGYTTRGKIGCTQPXXXXXXXXXXXXXEEFGCHLGEEVGYAIRFEYCTGPETV 1080
VTQYLAEAGYTTRGKIGCTQP EEFGC LGEEVGYAIRFE CTGP+TV
Sbjct: 583 VTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTV 642
Query: 1081 IKYMTDGMLLSEILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLVQRRPELRLIVTS 1260
IKYMTDGMLL EIL+DENLSQYSVIMLDEAHERTIHTDVLFGLLKQLV+RRPELRLIVTS
Sbjct: 643 IKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPELRLIVTS 702
Query: 1261 ATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDIL 1440
ATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDIL
Sbjct: 703 ATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDIL 762
Query: 1441 LFLTGQEEIDHACQSLYERMKGLGKSVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVV 1620
LFLTGQEEID ACQSLYERMKGLGK+VPELIILPVYSALPSEMQSRIFDPAPPGKRKVVV
Sbjct: 763 LFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVV 822
Query: 1621 ATNIAEASLTIDGIFYVIDP 1680
ATNIAEASLTIDGIFYVIDP
Sbjct: 823 ATNIAEASLTIDGIFYVIDP 842
>ref|XP_003549455.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA
helicase-like [Glycine max]
Length = 1197
Score = 884 bits (2284), Expect = 0.0
Identities = 448/560 (80%), Positives = 478/560 (85%)
Frame = +1
Query: 1 SQLASRRIPNAKDVVKRGQDVFVKVISMTGQKMSLSMRDVDQTTGKDLIPMKKRPDDDAS 180
SQ+A+RRI NAKDVVKR Q+V+VKVIS++GQK+SLSMRDVDQ TGKDL+P+KK +DDA
Sbjct: 277 SQMATRRITNAKDVVKRDQEVYVKVISVSGQKLSLSMRDVDQHTGKDLLPLKKSSEDDAL 336
Query: 181 RVNPQSSNQGPTSRTGLSGIRITEDDGPSSSRRPLKRMSSPEKWEAKQLMAAGVMDIREH 360
R+NPQ S GP +RTGLSGIRI E+ SSRRPLKRMSSPE+WEAKQL+A+GV+ + E+
Sbjct: 337 RMNPQDSKDGPVARTGLSGIRIVEEGDVGSSRRPLKRMSSPERWEAKQLIASGVLSVSEY 396
Query: 361 PMYDEDEDGXXXXXXXXXXXXXXXXXXXXPAFLQGQSRYSIDMSPVKIFKNPEGXXXXXX 540
P YD++ DG PAFLQGQSRYS+DMSPVKIFKNPEG
Sbjct: 397 PTYDDEGDGLLYQEEGAEEELEIELNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAA 456
Query: 541 XXXXXXIKXXXXXXXXXXXTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMP 720
IK TMLDSIPKDLNRPWEDPMPE+GERHLAQELRGVGLSAYDMP
Sbjct: 457 ALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMP 516
Query: 721 EWKKDAYGKALTFGQRTKLSIQEQRQILPIYKLKKELVLAVHDNQVLVVIGETGSGKTTQ 900
EWKKDAYGK +TFGQR+KLSIQEQRQ LPIYKLKKEL+ AVHDNQVLVVIGETGSGKTTQ
Sbjct: 517 EWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQ 576
Query: 901 VTQYLAEAGYTTRGKIGCTQPXXXXXXXXXXXXXEEFGCHLGEEVGYAIRFEYCTGPETV 1080
VTQYLAEAGYTTRGKIGCTQP EEFGC LGEEVGYAIRFE CTGP+TV
Sbjct: 577 VTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTV 636
Query: 1081 IKYMTDGMLLSEILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLVQRRPELRLIVTS 1260
IKYMTDGMLL EIL+DENLSQYSVIMLDEAHERTIHTDVLFGLLKQLV+RRPELRLIVTS
Sbjct: 637 IKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPELRLIVTS 696
Query: 1261 ATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDIL 1440
ATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDIL
Sbjct: 697 ATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDIL 756
Query: 1441 LFLTGQEEIDHACQSLYERMKGLGKSVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVV 1620
LFLTGQEEID ACQSLYERMKGLGK+VPELIILPVYSALPSEMQSRIFDPAPPGKRKVVV
Sbjct: 757 LFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVV 816
Query: 1621 ATNIAEASLTIDGIFYVIDP 1680
ATNIAEASLTIDGIFYVIDP
Sbjct: 817 ATNIAEASLTIDGIFYVIDP 836