BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00005042
         (770 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containi...   233   3e-59
ref|NP_198814.1| pentatricopeptide repeat-containing protein [Ar...   226   3e-57
ref|XP_002870737.1| pentatricopeptide repeat-containing protein ...   221   2e-55
ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containi...   218   1e-54
ref|XP_002517447.1| pentatricopeptide repeat-containing protein,...   209   7e-52

>ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic [Vitis vinifera]
           gi|296087770|emb|CBI35026.3| unnamed protein product
           [Vitis vinifera]
          Length = 675

 Score =  233 bits (595), Expect = 3e-59
 Identities = 122/197 (61%), Positives = 149/197 (75%), Gaps = 2/197 (1%)
 Frame = +2

Query: 185 YTNINKSKKHKPPSLLFTITSSSTHSPNKHVWKRXXXXXXXXXXXXX-HQTRHTHV-YLD 358
           ++  NK++KH+   +L ++         K VW+R              H+ R   V +LD
Sbjct: 36  FSPFNKTQKHRACFILVSVF--------KDVWRRLPDETTSLLSSSRQHRPRKQRVVHLD 87

Query: 359 HSVDMDDLLLSISQTSTQQELYSLLSIYKDRQLSLRFMVSVLARETDWQRTVALLDWMIE 538
           HSVDMD+LL SISQTS +QELYSL+S YK RQLS+RFMVS+L+RE DWQR++ALLDW+ E
Sbjct: 88  HSVDMDELLASISQTSNEQELYSLMSPYKGRQLSIRFMVSLLSREPDWQRSLALLDWINE 147

Query: 539 EAGYIPSVFAYNVVIRNVLRAKQWELGTGLVEEMRKRAISPDKFTYSTLITQFGKEGMFD 718
           EA Y PSVFAYNVVIRNVLRAKQWEL  GL EEMR+RA++PD++TYSTLIT FGKEGMFD
Sbjct: 148 EASYSPSVFAYNVVIRNVLRAKQWELAHGLFEEMRQRALAPDRYTYSTLITHFGKEGMFD 207

Query: 719 SALSWLQCMEQDRITGD 769
           SALSWLQ MEQDR++GD
Sbjct: 208 SALSWLQKMEQDRVSGD 224


>ref|NP_198814.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75171449|sp|Q9FLD8.1|PP408_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g39980, chloroplastic; Flags: Precursor
           gi|10176990|dbj|BAB10222.1| unnamed protein product
           [Arabidopsis thaliana] gi|332007115|gb|AED94498.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 678

 Score =  226 bits (577), Expect = 3e-57
 Identities = 113/186 (60%), Positives = 145/186 (77%), Gaps = 4/186 (2%)
 Frame = +2

Query: 224 SLLFTIT--SSSTHSPNKHVWKRXXXXXXXXXXXXX--HQTRHTHVYLDHSVDMDDLLLS 391
           +L+FT++  SSS  + NK VW++               H+      +LDH+VDMD+LL S
Sbjct: 39  NLIFTVSASSSSESTQNKKVWRKQPEKNTTSSFQALRKHRRYQRSAFLDHNVDMDELLAS 98

Query: 392 ISQTSTQQELYSLLSIYKDRQLSLRFMVSVLARETDWQRTVALLDWMIEEAGYIPSVFAY 571
           I QT  ++EL+SLLS YKDRQLS+RFMVS+L+RE DWQR++ALLDW+ EEA Y PSVFAY
Sbjct: 99  IHQTQNEKELFSLLSTYKDRQLSIRFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAY 158

Query: 572 NVVIRNVLRAKQWELGTGLVEEMRKRAISPDKFTYSTLITQFGKEGMFDSALSWLQCMEQ 751
           NVV+RNVLRAKQ+++  GL +EMR+RA++PD++TYSTLIT FGKEGMFDSALSWLQ MEQ
Sbjct: 159 NVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQ 218

Query: 752 DRITGD 769
           DR++GD
Sbjct: 219 DRVSGD 224


>ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297316573|gb|EFH46996.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 680

 Score =  221 bits (562), Expect = 2e-55
 Identities = 113/188 (60%), Positives = 145/188 (77%), Gaps = 6/188 (3%)
 Frame = +2

Query: 224 SLLFTIT-SSSTHSPN---KHVWKRXXXXXXXXXXXXX--HQTRHTHVYLDHSVDMDDLL 385
           +L+F ++ SSS+ SP+   K VW++               H+      +LDH+VDMD+LL
Sbjct: 39  NLIFKVSASSSSSSPSTQTKKVWRKQPEKNTTSSFQALRKHRRYQRSAFLDHNVDMDELL 98

Query: 386 LSISQTSTQQELYSLLSIYKDRQLSLRFMVSVLARETDWQRTVALLDWMIEEAGYIPSVF 565
            SI QT  ++EL+SLLS YKDRQLS+RFMVS+L+RE DWQR++ALLDW+ EEA Y PSVF
Sbjct: 99  ASIHQTQNEKELFSLLSTYKDRQLSIRFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVF 158

Query: 566 AYNVVIRNVLRAKQWELGTGLVEEMRKRAISPDKFTYSTLITQFGKEGMFDSALSWLQCM 745
           AYNVV+RNVLRAKQ+ +  GL +EMR+RA++PD++TYSTLIT FGKEGMFDSALSWLQ M
Sbjct: 159 AYNVVLRNVLRAKQFGIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKM 218

Query: 746 EQDRITGD 769
           EQDR++GD
Sbjct: 219 EQDRVSGD 226


>ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
           gi|449530101|ref|XP_004172035.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
          Length = 680

 Score =  218 bits (554), Expect = 1e-54
 Identities = 109/201 (54%), Positives = 145/201 (72%), Gaps = 6/201 (2%)
 Frame = +2

Query: 185 YTNINKSKKHKPPSLLFTITSSSTHSPNKHVWKRXXXXXXXXXXXXXHQTRHT------H 346
           Y  +  +K    P     I ++S+ S +K +W+R              + + +       
Sbjct: 28  YPKVRFNKIKIKPRTRIPIFTASSSSTSKDIWRRQTPSEKSTTTLLPQKYQRSGRRPRES 87

Query: 347 VYLDHSVDMDDLLLSISQTSTQQELYSLLSIYKDRQLSLRFMVSVLARETDWQRTVALLD 526
            +LDHS+DMD+LL SI QT  +QELYS+LS YK R+LS+RFMVS+L+RE+DWQR++A+LD
Sbjct: 88  SHLDHSIDMDELLASIGQTKNEQELYSVLSPYKGRELSMRFMVSLLSRESDWQRSLAILD 147

Query: 527 WMIEEAGYIPSVFAYNVVIRNVLRAKQWELGTGLVEEMRKRAISPDKFTYSTLITQFGKE 706
           W+ EEA Y PSV+AYNVV+RNVLRAKQWEL  GL +EMR+RA++ D++TYSTLIT FGKE
Sbjct: 148 WINEEALYTPSVYAYNVVLRNVLRAKQWELAHGLFDEMRQRALAADRYTYSTLITYFGKE 207

Query: 707 GMFDSALSWLQCMEQDRITGD 769
           GMFD+ALSWLQ MEQDR++GD
Sbjct: 208 GMFDAALSWLQKMEQDRVSGD 228


>ref|XP_002517447.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543458|gb|EEF44989.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 654

 Score =  209 bits (531), Expect = 7e-52
 Identities = 100/143 (69%), Positives = 122/143 (85%)
 Frame = +2

Query: 341 THVYLDHSVDMDDLLLSISQTSTQQELYSLLSIYKDRQLSLRFMVSVLARETDWQRTVAL 520
           T  YLDHSVDM  LL+SISQT  + ELYSLLS YK+RQLS+RFMVS++++E DWQR++AL
Sbjct: 61  TPSYLDHSVDMKQLLISISQTQNEVELYSLLSPYKERQLSIRFMVSLISQEADWQRSLAL 120

Query: 521 LDWMIEEAGYIPSVFAYNVVIRNVLRAKQWELGTGLVEEMRKRAISPDKFTYSTLITQFG 700
           LDW+ E A Y PSVFAYNVV+RNVLRAK+W+L  GL +EMR+RA+SPD++TYSTLIT FG
Sbjct: 121 LDWINEVARYSPSVFAYNVVLRNVLRAKKWDLAHGLFDEMRQRALSPDRYTYSTLITSFG 180

Query: 701 KEGMFDSALSWLQCMEQDRITGD 769
           K GMFD +L WLQ MEQDR++GD
Sbjct: 181 KAGMFDESLFWLQQMEQDRVSGD 203