BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00004999
         (6338 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga...   554   0.0  
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...   523   0.0  
emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulga...   545   e-180
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga...   539   e-177
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...   517   e-175

>emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1357

 Score =  554 bits (1427), Expect(2) = 0.0
 Identities = 302/833 (36%), Positives = 451/833 (54%), Gaps = 6/833 (0%)
 Frame = -3

Query: 3738 MTIHA*NCREIGTTTAIQQLKDLIGRFNVDIMCLAETKANKEKIGYLSKKLKLEGHFAVP 3559
            M I   NC+ +G    ++QL+ L+     D + ++ETK  K  +    + L   G F V 
Sbjct: 1    MKILCWNCQGMGNPWTVRQLRRLMASNTPDSLFMSETKVTKNIVEQKKESLGFSGAFGVS 60

Query: 3558 AQGQSGGLAVLWKEG-VELEILGASKNQITGKLANYFSTDDWFFSFVYGEPAAHNRNKVW 3382
              G++GGL + WKE  +   ++  S+N I G + +      W F  +YG P   N++K W
Sbjct: 61   CVGRAGGLCMFWKEETISFRMVSFSQNHICGDVGSNGDVR-WRFVGIYGWPEEENKHKTW 119

Query: 3381 NELRGLAPLIPGPWCLFGDFNAIAQLNEKIGGKSTISKSMHEFNNLINDLGLVDLGFKGP 3202
              ++GL     GP    GDFN I   +EK GG S   +++  F N+++D  L DL F G 
Sbjct: 120  ALIKGLCDEYEGPIVFGGDFNEILSYDEKEGGASRERRAIVGFRNVMDDCSLGDLRFVGQ 179

Query: 3201 KFTWSNNRRIGDHVLERLDRAMASTEWIALFPHALVQTVANASSDHISLIINLDNKE--- 3031
              TW   R     + ERLDR + S  W+ LFP A +       SDH ++++     E   
Sbjct: 180  WHTWERGRSPESRIRERLDRFIVSRSWLHLFPEAFIDHQVRYCSDHAAIVLRCLGNEGMP 239

Query: 3030 ERNPRPFKFFNMWLANDACKPVIEKAWNAITHDLPDHNLIHKLHKTRTDLSVWNKFVFGN 2851
             R    F F   WL +D C+ V+  AWNA         +  KL     +L  W+K  FG+
Sbjct: 240  RRRAGGFWFETFWLLDDTCEEVVRGAWNAAEGG----RICEKLGAVARELQGWSKKTFGS 295

Query: 2850 IFTNIKAAQKDLDTVLAKPFSTKNYNKAKDIKANLLGWYEKEEDFWKQKSTFDWIKDGGK 2671
            +   I+A +K L     +  S  ++ +   ++  L   + K E +W  +S    +KDG +
Sbjct: 296  LRKKIEAVEKKLHAAQGEATSIDSWERCVGLERELDELHAKNEAYWYLRSRVAEVKDGDR 355

Query: 2670 NTRFYHLSTXXXXXXXXXXXXXXXDGEWREGRTDVGTSLNQYFTDIFTTDSPVRDN--QI 2497
            NT ++H                   G W+    ++   + +YF +IFT+  P  ++  ++
Sbjct: 356  NTSYFHHKASQRKKRNLIHGIFDGGGRWQTEGEEIECVVERYFQEIFTSSEPSSNDFQEV 415

Query: 2496 MDLFKSIVSDRENEILISTPDQEDIWKVVKKMGSLKSPGPDGFQGVFYKKCWDIVGPAVV 2317
            +   K  V+   N+IL+    +E+I+  +  M   K+PGPDG   +FY++ W I+G  V 
Sbjct: 416  LQHVKRSVTQEYNDILLKPYSKEEIFAALSDMHPCKAPGPDGMHAIFYQRFWHIIGDEVF 475

Query: 2316 SFVQDFFNTGYLNPKFNETYIALIPKVVNPDHVSKFRPISLCNFGYKVVSKILANRLKGL 2137
            +FV    +        N T IALIPKV +P  VS+FRPISLCN  YK+ SK +  RLK  
Sbjct: 476  NFVSSILHNYSCPGNVNCTNIALIPKVKSPTVVSEFRPISLCNVLYKIASKAIVLRLKRF 535

Query: 2136 MNRIISPFQGAFIKGRSIGDNVGLACEVFHNMKNMKSKKEGWCALKMDMAKAYDRVEWAF 1957
            +  I +  Q AF+ GR I DN  +A E+FH MK   + ++G  A+K+DM+KAYDRVEW F
Sbjct: 536  LPCIATENQSAFVPGRLISDNSLIALEIFHTMKKRNNSRKGLMAMKLDMSKAYDRVEWGF 595

Query: 1956 VDNIFEKLGFNNKWRHMIHQCLSTVSFQIMLNGSPLEKINPERGLRQGDPLSPYLFILVS 1777
            +  +   +GF+ +W +++  C++TVS+  ++NG     + P RGLRQGDPLSP+LFILV+
Sbjct: 596  LRKLLLTMGFDGRWVNLVMSCVATVSYSFIINGRVCGSVTPSRGLRQGDPLSPFLFILVA 655

Query: 1776 EALSRLIAQAESKEELHGVKIRRNSPALTHLLYADDLILFIKANLAESGQLKHILECYCR 1597
            +A S+++ Q    +E+HG K  RN P ++HLL+ADD +LF +A   E   +  IL  Y  
Sbjct: 656  DAFSQMVKQKVVSKEIHGAKASRNGPEISHLLFADDSLLFTRATRQECLTIVDILNKYEA 715

Query: 1596 ASGQKINYEKSSVFFSRNVSYRQKIKLKRFWRMKNFQPKEKYLGVPIMLSRKKAEDFDYL 1417
            ASGQKINYEKS V FSR VS  +K +L     M+     +KYLG+P +  R K   F  L
Sbjct: 716  ASGQKINYEKSEVSFSRGVSCEKKEELITLLHMRQVDRHQKYLGIPALCGRSKKVLFREL 775

Query: 1416 VDRIHRKVKGWKAKALSQAGRTTLIQAVIQATPLYVMSTYLLPVATCNKMDKA 1258
            +DR+ +K++GWK K LS+AG+  LI+AVIQA P Y+M  Y LPVA   ++  A
Sbjct: 776  LDRMWKKLRGWKEKLLSRAGKEVLIKAVIQALPTYLMGVYKLPVAVIQEIHSA 828



 Score =  114 bits (286), Expect(2) = 0.0
 Identities = 80/291 (27%), Positives = 126/291 (43%), Gaps = 6/291 (2%)
 Frame = -1

Query: 1244 FWWNGTEQSKSVHTIGWEQICKSKQEGGLGLRKTRDMNKAMLAKLPWKAATDVHSLWTQT 1065
            FWW G    + +H + WE++CK K  GG+G +     N A+L K  W+   +  SL ++ 
Sbjct: 832  FWWGGKGDERKMHWLSWEKMCKPKCMGGMGFKDLAVFNDALLGKQVWRLLHNKESLLSRV 891

Query: 1064 MFSIYGKHWIGDV--LKPPDQASYFWKGIHKVFNSISGGLMWRIGKGTTTSILKDPWI-- 897
            M + Y  H  GDV   +     SY W+ I    + +  GL+WR+G GT   I   PW+  
Sbjct: 892  MSAKYYPH--GDVRYARLGYSHSYSWRSIWGAKSLVLEGLIWRVGDGTKIDIWSAPWVGD 949

Query: 896  --KCLNKPMTLAELGVVDNSLNNLHVSDLFLPDGSGWDTVKLNHWFHPFLSQLMQEIVVR 723
                  K   +  L V         V DL   +   W+   +   F+    Q +  I + 
Sbjct: 950  EEGRFIKSARVEGLEV---------VGDLMDVERKEWNVELIERHFNERDQQCILAIPL- 999

Query: 722  PATAPADKMIWAMERFGKLTVKTVYAYLKNNEKEMGQSSSVNYIALKHLWAAPLPSYLQM 543
                  D++ WA  + G  +VKT Y   K      G +    +     LW+  +   ++ 
Sbjct: 1000 STRCLQDELTWAYSKDGTYSVKTAYMLGK------GGNLDDFHRVWNILWSLNVSPKVRH 1053

Query: 542  FLWKLYMHVLPLGDRLAEKNMKGDFSCPFCNREMETAEHLFFTCDWTRTVW 390
            FLW+     LP+   L  +++  +  CP C RE ET  HLF+ C  +  +W
Sbjct: 1054 FLWRACTSSLPVRKVLQRRHLIDEAGCPCCAREDETQFHLFYRCPMSLKLW 1104


>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score =  523 bits (1348), Expect(2) = 0.0
 Identities = 290/829 (34%), Positives = 452/829 (54%), Gaps = 9/829 (1%)
 Frame = -3

Query: 3720 NCREIGTTTAIQQLKDLIGRFNVDIMCLAETKANKEKIGYLSKKLKLEGHFAVPAQGQS- 3544
            NCR +G+ +A+  L+ L+   N  I+ L+ETK    ++  + KKLK E   AV  +G+  
Sbjct: 8    NCRGMGSPSALSALRRLLASENPQIVFLSETKLKSYEMESVKKKLKWEHMVAVDCEGECR 67

Query: 3543 ---GGLAVLWKEGVELEILGASKNQITGKLANYFSTDDWFFSFVYGEPAAHNRNKVWNEL 3373
               GGLA+LW+  ++++++  S N I   +    +  +W F+ +YG P   +++K    L
Sbjct: 68   KRRGGLAMLWRSEIKVQVMSMSSNHIDIVVGEE-AQGEWRFTGIYGYPEEEHKDKTGALL 126

Query: 3372 RGLAPLIPGPWCLFGDFNAIAQLNEKIGGKSTISKSMHEFNNLINDLGLVDLGFKGPKFT 3193
              LA     PW   GDFN +   +EK GG    S+    F N + +   +DLGF G +FT
Sbjct: 127  SALARASRRPWLCGGDFNLMLVASEKKGGDGFNSREADIFRNAMEECHFMDLGFVGYEFT 186

Query: 3192 WSNNRRIGDHVLERLDRAMASTEWIALFPHALVQTVANASSDHISLIINLDNKEE----- 3028
            W+NNR    ++ ERLDR +A+  W   FP + V  +    SDH+ ++ ++   +      
Sbjct: 187  WTNNRGGDANIQERLDRFVANDLWKIKFPGSFVSHLPKRKSDHVPIVASVKGAQSAATRT 246

Query: 3027 RNPRPFKFFNMWLANDACKPVIEKAWNAITHDLPDHNLIHKLHKTRTDLSVWNKFVFGNI 2848
            +  + F+F  MWL       V+++ W   T    D  +   L +T   L  W+K  FG++
Sbjct: 247  KKSKRFRFEAMWLREGESDEVVKETWMRGT----DAGI--NLARTANKLLSWSKQKFGHV 300

Query: 2847 FTNIKAAQKDLDTVLAKPFSTKNYNKAKDIKANLLGWYEKEEDFWKQKSTFDWIKDGGKN 2668
               I+  Q  +  ++    S  N    + + A +    ++EE +W Q+S  DWIK G KN
Sbjct: 301  AKEIRMCQHQMKVLMESEPSEDNIMHMRALDARMDELEKREEVYWHQRSRQDWIKSGDKN 360

Query: 2667 TRFYHLSTXXXXXXXXXXXXXXXDGEWREGRTDVGTSLNQYFTDIFTTDSPVRDNQIMDL 2488
            T+F+H                   GEW E   DV      YF ++F + +    + I+++
Sbjct: 361  TKFFHQKASHREQRNNVRRIRNEAGEWFEDEDDVTECFAHYFENLFQSGNNCEMDPILNI 420

Query: 2487 FKSIVSDRENEILISTPDQEDIWKVVKKMGSLKSPGPDGFQGVFYKKCWDIVGPAVVSFV 2308
             K  ++D     L +   +E++   + +M   K+PGPDG   +FY+  WD +G  V + V
Sbjct: 421  VKPQITDELGTQLDAPFRREEVSAALAQMHPNKAPGPDGMNALFYQHFWDTIGEDVTTKV 480

Query: 2307 QDFFNTGYLNPKFNETYIALIPKVVNPDHVSKFRPISLCNFGYKVVSKILANRLKGLMNR 2128
             +  N        N+T+I LIPK  + +    FRPISLCN  YK+V+K+LANR+K ++  
Sbjct: 481  LNMLNNVDNIGAVNQTHIVLIPKKKHCESPVDFRPISLCNVLYKIVAKVLANRMKMVLPM 540

Query: 2127 IISPFQGAFIKGRSIGDNVGLACEVFHNMKNMKSKKEGWCALKMDMAKAYDRVEWAFVDN 1948
            +I   Q  F+ GR I DNV +A E FH ++  K+ K+G+  LK+DM+KAYDRVEW F++N
Sbjct: 541  VIHESQSGFVPGRLITDNVLVAYECFHFLRKKKTGKKGYLGLKLDMSKAYDRVEWCFLEN 600

Query: 1947 IFEKLGFNNKWRHMIHQCLSTVSFQIMLNGSPLEKINPERGLRQGDPLSPYLFILVSEAL 1768
            +  KLGF  ++  ++  C+++  F +++NG P     P RGLRQGDPLSP+LF++ +E L
Sbjct: 601  MMLKLGFPTRYTKLVMNCVTSARFSVLVNGQPSRNFFPSRGLRQGDPLSPFLFVVCAEGL 660

Query: 1767 SRLIAQAESKEELHGVKIRRNSPALTHLLYADDLILFIKANLAESGQLKHILECYCRASG 1588
            S L+  AE K+ +HGVKI      ++HL +ADD +LFI+A   E   +  IL  Y  ASG
Sbjct: 661  STLLRDAEEKKVIHGVKIGHRVSPISHLFFADDSLLFIRATEEEVENVMDILSTYEAASG 720

Query: 1587 QKINYEKSSVFFSRNVSYRQKIKLKRFWRMKNFQPKEKYLGVPIMLSRKKAEDFDYLVDR 1408
            QK+N EKS + +SRN+   +   L+     K  +  EKYLG+P  +   K   F  + DR
Sbjct: 721  QKLNMEKSEMSYSRNLEPDKINTLQMKLAFKTVEGHEKYLGLPTFIGSSKKRVFQAIQDR 780

Query: 1407 IHRKVKGWKAKALSQAGRTTLIQAVIQATPLYVMSTYLLPVATCNKMDK 1261
            + +K+KGWK K LSQAGR  LI+AV QA P Y M  +++P +  + ++K
Sbjct: 781  VWKKLKGWKGKYLSQAGREVLIKAVAQAIPTYAMQCFVIPKSIIDGIEK 829



 Score =  144 bits (362), Expect(2) = 0.0
 Identities = 116/422 (27%), Positives = 191/422 (45%), Gaps = 3/422 (0%)
 Frame = -1

Query: 1265 IRHICRDFWWNGTEQSKSVHTIGWEQICKSKQEGGLGLRKTRDMNKAMLAKLPWKAATDV 1086
            I  +CR+F+W   E+ + V  + WE++   K+EGGLG+R     N+A+LAK  W+  T  
Sbjct: 827  IEKMCRNFFWGQKEEERRVAWVAWEKLFLPKKEGGLGIRNFDVFNRALLAKQAWRILTKP 886

Query: 1085 HSLWTQTMFSIYGKHWIGDVLKPPDQASYFWKGIHKVFNSISGGLMWRIGKGTTTSILKD 906
             SL  + +   Y         +     S+  K I      I  G+   IG G  T+I  D
Sbjct: 887  DSLMARVIKGKYFPRSNFLEARVSPNMSFTCKSILSARAVIQKGMCRVIGDGRDTTIWGD 946

Query: 905  PWIKCLNKPMTLAELGVVDNSLNNLHVSDLFLPDGSGWDTVKLNHWFHPFLSQLMQEIVV 726
            PW+  L +    A  GV ++      V +L   D   W+   LN  F P+ S  +Q I V
Sbjct: 947  PWVPSLERYSIAATEGVSEDD-GPQKVCELISND--RWNVELLNTLFQPWESTAIQRIPV 1003

Query: 725  RPATAPADKMIWAMERFGKLTVKTVYAYLKNNEKEMGQSSS--VNYIALKHLWAAPLPSY 552
                 P D+ +W M + G+ TV++ Y +    +++ G S+S   N    + +W A +P  
Sbjct: 1004 ALQKKP-DQWMWMMSKNGQFTVRSAYYHELLEDRKTGPSTSRGPNLKLWQKIWKAKIPPK 1062

Query: 551  LQMFLWKLYMHVLPLGDRLAEKNMKGDFSCPFCNREMETAEHLFFTCDWTRTVWFCSQVG 372
            +++F WK   + L +   + ++ M  D +CP C  + ET EHL + CD +   W+ S   
Sbjct: 1063 VKLFSWKAIHNGLAVYTNMRKRGMNIDGACPRCGEKEETTEHLIWGCDESSRAWYISP-- 1120

Query: 371  LRINTTQQPHG-LRNRIELYLSWCTSKDRDQCMAGTHIMYLLHYIWRARNELKFDKRNAN 195
            LRI+T     G  R  +E  L   T KD +       I +    IW  RN+  F+K+   
Sbjct: 1121 LRIHTGNIEAGSFRIWVESLLD--THKDTEWWALFWMICW---NIWLGRNKWVFEKKKLA 1175

Query: 194  RDRIIRQSRVMADKCLDAFREDSLSFQLPSNLSKNSLEKLFPEIPIDSIVIRFDASYDRN 15
               ++ +    A + +  F E+         L  N+ E  +   P+  + +  DA+  ++
Sbjct: 1176 FQEVVER----AVRGVMEFEEECAHTSPVETL--NTHENGWSVPPVGMVKLNVDAAVFKH 1229

Query: 14   TG 9
             G
Sbjct: 1230 VG 1231


>emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score =  545 bits (1403), Expect(2) = e-180
 Identities = 296/832 (35%), Positives = 453/832 (54%), Gaps = 5/832 (0%)
 Frame = -3

Query: 3738 MTIHA*NCREIGTTTAIQQLKDLIGRFNVDIMCLAETKANKEKIGYLSKKLKLEGHFAVP 3559
            M I   NCR +G    ++QL+     +  DIM L+ET  NK +   L  +L     F V 
Sbjct: 1    MNILCWNCRGVGNPRTVRQLRKWSTFYAPDIMFLSETMINKTESEALKSRLGFANAFGVS 60

Query: 3558 AQGQSGGLAVLWKEGVELEILGASKNQITGKLANYFSTDDWFFSFVYGEPAAHNRNKVWN 3379
            ++G++GGL V W+E +   ++  S++ I G + +      W F  +YG      ++  W+
Sbjct: 61   SRGRAGGLCVFWREELSFSLVSFSQHHICGDIDD--GAKKWRFVGIYGWAKEEEKHHTWS 118

Query: 3378 ELRGLAPLIPGPWCLFGDFNAIAQLNEKIGGKSTISKSMHEFNNLINDLGLVDLGFKGPK 3199
             +R L   +  P  + GDFN I    EK GG   + + M++F   ++DL L DLG+ G  
Sbjct: 119  LMRFLCEDLSRPILMGGDFNEIMSYEEKEGGADRVRRGMYQFRETMDDLFLRDLGYNGVW 178

Query: 3198 FTWSNNRRIGDHVLERLDRAMASTEWIALFPHALVQTVANASSDHISLII--NLDNKEER 3025
             TW     +   + ERLDR + S  W  ++P+ +V       SDH+++ +  N   +   
Sbjct: 179  HTWERGNSLSTCIRERLDRFVCSPSWATMYPNTIVDHSMRYKSDHLAICLRSNRTRRPTS 238

Query: 3024 NPRPFKFFNMWLANDACKPVIEKAWNAITHDLPDHNLIHKLHKTRTDLSVWNKFVFGNIF 2845
              R F F   WL +  C+  I  AW     D    +L  +L      L  W+    GNI 
Sbjct: 239  KQRRFFFETSWLLDPTCEETIRDAWT----DSAGDSLTGRLDLLALKLKSWSSEKGGNIG 294

Query: 2844 TNIKAAQKDLDTVLAKPFSTKNYNKAKDIKANLLGWYEKEEDFWKQKSTFDWIKDGGKNT 2665
              +   + DL  +  +P S+ N      ++  L   + K+E  W  +S    ++DG +NT
Sbjct: 295  KQLGRVESDLCRLQQQPISSANCEARLTLEKKLDELHAKQEARWYLRSRAMEVRDGDRNT 354

Query: 2664 RFYHLSTXXXXXXXXXXXXXXXDGEWREGRTDVGTSLNQYFTDIFTTDSP--VRDNQIMD 2491
            +++H                   G W E   D+      YFT IFT+ +P  V+ N ++ 
Sbjct: 355  KYFHHKASQRKKRNFVKGLFDASGTWCEEVDDIECVFTDYFTSIFTSTNPSDVQLNDVLC 414

Query: 2490 LFKSIVSDRENEILISTPDQEDIWKVVKKMGSLKSPGPDGFQGVFYKKCWDIVGPAVVSF 2311
                +V++  N  L+    +E+++  + +M   K+PGPDG   +FY+K W I+G  V  F
Sbjct: 415  CVDPVVTEECNTWLLKPFSKEELYVALSQMHPCKAPGPDGMHAIFYQKFWHIIGDDVTQF 474

Query: 2310 VQDFFNTGYLNPK-FNETYIALIPKVVNPDHVSKFRPISLCNFGYKVVSKILANRLKGLM 2134
            V    + G ++P   N T IALIPKV NP   ++FRPI+LCN  YK+VSK L  RLK  +
Sbjct: 475  VSSILH-GSISPSCINHTNIALIPKVKNPTTPAEFRPIALCNVVYKLVSKALVIRLKDFL 533

Query: 2133 NRIISPFQGAFIKGRSIGDNVGLACEVFHNMKNMKSKKEGWCALKMDMAKAYDRVEWAFV 1954
             R++S  Q AF+ GR I DN  +A EVFH+MK+    ++G  A+K+DM+KAYDRVEW F+
Sbjct: 534  PRLVSENQSAFVPGRLITDNALIAMEVFHSMKHRNRSRKGTIAMKLDMSKAYDRVEWGFL 593

Query: 1953 DNIFEKLGFNNKWRHMIHQCLSTVSFQIMLNGSPLEKINPERGLRQGDPLSPYLFILVSE 1774
              +   +GF+ +W ++I  C+S+VS+  ++NG     + P RGLR GDPLSPYLFIL+++
Sbjct: 594  RKLLLTMGFDGRWVNLIMSCVSSVSYSFIINGGVCGSVTPARGLRHGDPLSPYLFILIAD 653

Query: 1773 ALSRLIAQAESKEELHGVKIRRNSPALTHLLYADDLILFIKANLAESGQLKHILECYCRA 1594
            A S++I +   +++LHG K  R+ P ++HL +AD  +LF +A+  E   +  IL  Y +A
Sbjct: 654  AFSKMIQKKVQEKQLHGAKASRSGPVISHLFFADVSLLFTRASRQECAIIVEILNLYEQA 713

Query: 1593 SGQKINYEKSSVFFSRNVSYRQKIKLKRFWRMKNFQPKEKYLGVPIMLSRKKAEDFDYLV 1414
            SGQKINY+KS V FS+ VS  QK +L    +MK  +   KYLG+P +  R +   FD L+
Sbjct: 714  SGQKINYDKSEVSFSKGVSIAQKEELSNILQMKQVERHMKYLGIPSITGRSRTAIFDSLM 773

Query: 1413 DRIHRKVKGWKAKALSQAGRTTLIQAVIQATPLYVMSTYLLPVATCNKMDKA 1258
            DRI +K++GWK K LS+AG+  L+++VIQA P Y+M  Y LP +   K+  A
Sbjct: 774  DRIWKKLQGWKEKLLSRAGKEILLKSVIQAIPTYLMGVYKLPCSIIQKIHSA 825



 Score =  117 bits (292), Expect(2) = e-180
 Identities = 80/291 (27%), Positives = 128/291 (43%), Gaps = 6/291 (2%)
 Frame = -1

Query: 1244 FWWNGTEQSKSVHTIGWEQICKSKQEGGLGLRKTRDMNKAMLAKLPWKAATDVHSLWTQT 1065
            FWW  ++  + +H   W+ +C  K  GG+G R  R  N A+L +  W+   + HSL  + 
Sbjct: 829  FWWGSSDTQRRIHWKNWDSLCTLKCFGGMGFRDLRVFNDALLGRQAWRLVREPHSLLARV 888

Query: 1064 M-FSIYGKHWIGDVLKPP--DQASYFWKGIHKVFNSISGGLMWRIGKGTTTSILKDPWIK 894
            M    Y  H   D L  P     SY W+ I      +  G++WRIG GT   I +DPW+ 
Sbjct: 889  MKAKYYSNH---DFLDAPLGVSTSYSWRSIWSSKALLKEGMVWRIGNGTNVRIWEDPWV- 944

Query: 893  CLNKPMTLAELG--VVDNSLNNLH-VSDLFLPDGSGWDTVKLNHWFHPFLSQLMQEIVVR 723
                   L ELG  +      NL+ VS+L   D   W    +   F+    + +  I + 
Sbjct: 945  -------LDELGRFITSEKHGNLNMVSELIDFDRMEWKVSLIETVFNERDIKCILSIPL- 996

Query: 722  PATAPADKMIWAMERFGKLTVKTVYAYLKNNEKEMGQSSSVNYIALKHLWAAPLPSYLQM 543
             +    D++ WA  +    +VKT Y   K    +    + ++      +W+  +   ++ 
Sbjct: 997  SSLPLKDELTWAFTKNAHYSVKTAYMLGKGGNLDSFHQAWID------IWSMEVSPKVKH 1050

Query: 542  FLWKLYMHVLPLGDRLAEKNMKGDFSCPFCNREMETAEHLFFTCDWTRTVW 390
            FLW+L  + LP+   L  ++M  D  CP    E E+  H  F C + R +W
Sbjct: 1051 FLWRLGTNTLPVRSLLKHRHMLDDDLCPRGCGEPESQFHAIFGCPFIRDLW 1101


>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score =  539 bits (1389), Expect(2) = e-177
 Identities = 298/832 (35%), Positives = 454/832 (54%), Gaps = 5/832 (0%)
 Frame = -3

Query: 3738 MTIHA*NCREIGTTTAIQQLKDLIGRFNVDIMCLAETKANKEKIGYLSKKLKLEGHFAVP 3559
            M I   NCR +G   +++QL+    +F  DI+ ++ET  NK ++  L   L     F V 
Sbjct: 1    MNILCWNCRGLGNPWSVRQLRSWSNQFAPDIIFVSETMINKIEVEALKSWLGFSNAFGVA 60

Query: 3558 AQGQSGGLAVLWKEGVELEILGASKNQITGKLANYFSTDDWFFSFVYGEPAAHNRNKVWN 3379
            + G++GGL + WKE V   ++  S++ I G + +      W F  VYG      ++  W+
Sbjct: 61   SVGRAGGLCLYWKEEVMFSLVSFSQHHICGDVED--GNKKWRFVGVYGWAKEEEKHLTWS 118

Query: 3378 ELRGLAPLIPGPWCLFGDFNAIAQLNEKIGGKSTISKSMHEFNNLINDLGLVDLGFKGPK 3199
             LR L      P  L GDFN I    EK GG + + + M  F + ++ L L DLG+ G  
Sbjct: 119  LLRHLCEDTSLPILLGGDFNEILSAAEKEGGANRVRREMINFRDTLDTLALRDLGYVGTW 178

Query: 3198 FTWSNNRRIGDHVLERLDRAMASTEWIALFPHALVQTVANASSDHISLIINLDN--KEER 3025
            +TW   R     + ERLDR + S  W+ L+P ++ +      SDH ++++      +   
Sbjct: 179  YTWERGRSPSTCIRERLDRYLCSNSWLDLYPDSVPEHTIRYKSDHSAIVLRSQRAGRPRG 238

Query: 3024 NPRPFKFFNMWLANDACKPVIEKAWNAITHDLPDHNLIHKLHKTRTDLSVWNKFVFGNIF 2845
              R   F   WL +D C+ V+ ++W     ++    +  ++      L  W+   F N+ 
Sbjct: 239  KTRRLHFETSWLLDDECEAVVRESWENSEGEV----MTGRVASMGQCLVRWSTKKFKNLS 294

Query: 2844 TNIKAAQKDLDTVLAKPFSTKNYNKAKDIKANLLGWYEKEEDFWKQKSTFDWIKDGGKNT 2665
              I+ A+K L      P S     +   ++  L   + K E +W  +S    +KDG KNT
Sbjct: 295  KQIETAEKALSVAQNNPISESACQECVLLEKKLDELHAKHEAYWYLRSRVAEVKDGDKNT 354

Query: 2664 RFYHLSTXXXXXXXXXXXXXXXDGEWREGRTDVGTSLNQYFTDIFTTDSP--VRDNQIMD 2491
            +++H                   G WRE    +      YF+ IFT+ +P  +    +M 
Sbjct: 355  KYFHHKASQRKKRNFVKGLFDGLGTWREEADHIENIFTSYFSSIFTSSNPSDLSLEAVMS 414

Query: 2490 LFKSIVSDRENEILISTPDQEDIWKVVKKMGSLKSPGPDGFQGVFYKKCWDIVGPAVVSF 2311
            + + +V++  N  L+    +++I   +++M   K+PGPDG   +FY++ W IVG  V SF
Sbjct: 415  VIEPVVTEEHNLKLLEPFSKDEILAALQQMHPCKAPGPDGMHVIFYQRFWHIVGDDVTSF 474

Query: 2310 VQDFFNTGYLNPK-FNETYIALIPKVVNPDHVSKFRPISLCNFGYKVVSKILANRLKGLM 2134
            + +  + G+ +P   N T IALIPKV NP   ++FRPI+LCN  YK++SK +  RLK  +
Sbjct: 475  ISNILH-GHSSPSCVNNTNIALIPKVKNPTKAAEFRPIALCNVLYKLMSKAIVMRLKSFL 533

Query: 2133 NRIISPFQGAFIKGRSIGDNVGLACEVFHNMKNMKSKKEGWCALKMDMAKAYDRVEWAFV 1954
              IIS  Q AF+ GR I DN  +A EVFH+MKN    ++G  A+K+DM+KAYDRVEW F+
Sbjct: 534  PEIISENQSAFVPGRLITDNALIAMEVFHSMKNRNRSRKGTIAMKLDMSKAYDRVEWGFL 593

Query: 1953 DNIFEKLGFNNKWRHMIHQCLSTVSFQIMLNGSPLEKINPERGLRQGDPLSPYLFILVSE 1774
              +   +GF+ +W ++I + +S+V++  ++NGS    + P RGLRQGDPLSPYLFI+V++
Sbjct: 594  RKLLLTMGFDGRWVNLIMEFVSSVTYSFIINGSVCGSVVPARGLRQGDPLSPYLFIMVAD 653

Query: 1773 ALSRLIAQAESKEELHGVKIRRNSPALTHLLYADDLILFIKANLAESGQLKHILECYCRA 1594
            A S++I +    ++LHG K  R+ P ++HL +ADD +LF +AN  E   +  IL  Y  A
Sbjct: 654  AFSKMIQRKVQDKQLHGAKASRSGPEISHLFFADDSLLFTRANRQECTIIVDILNQYELA 713

Query: 1593 SGQKINYEKSSVFFSRNVSYRQKIKLKRFWRMKNFQPKEKYLGVPIMLSRKKAEDFDYLV 1414
            SGQKINYEKS V +SR VS  QK +L     M+     EKYLG+P +  R K   FD L+
Sbjct: 714  SGQKINYEKSEVSYSRGVSVSQKDELTNILNMRQVDRHEKYLGIPSISGRSKKAIFDSLI 773

Query: 1413 DRIHRKVKGWKAKALSQAGRTTLIQAVIQATPLYVMSTYLLPVATCNKMDKA 1258
            DRI +K++GWK K LS+AG+  L+++VIQA P Y+M  Y  PV    K+  A
Sbjct: 774  DRIWKKLQGWKEKLLSRAGKEVLLKSVIQAIPTYLMGVYKFPVFIIQKIQSA 825



 Score =  112 bits (280), Expect(2) = e-177
 Identities = 104/417 (24%), Positives = 172/417 (41%), Gaps = 11/417 (2%)
 Frame = -1

Query: 1244 FWWNGTEQSKSVHTIGWEQICKSKQEGGLGLRKTRDMNKAMLAKLPWKAATDVHSLWTQT 1065
            FWW  ++  + +H   W+ +C  K  GG+G +     N A+L +  W+   +  SL  + 
Sbjct: 829  FWWGSSDTQRKIHWKNWDSMCNLKCFGGMGFKDLTIFNDALLGRQAWRLTREPQSLLGRV 888

Query: 1064 MFSIYGKHWIGDVLKPP--DQASYFWKGIHKVFNSISGGLMWRIGKGTTTSILKDPWIKC 891
            M + Y  +   D L  P    +SY W  I      +  G++WR+G G+  ++  DPW+  
Sbjct: 889  MKAKYFPNC--DFLNAPLGHSSSYSWSSIWSSKALLKEGVIWRVGNGSQINMWSDPWV-- 944

Query: 890  LNKPMTLAELGVVDNSLNNLH---VSDLFLPDGSGWDTVKLNHWFHPFLSQLMQEIVVRP 720
                  L E G    S  +     VS+L   D   W T  L  + +    + ++ I+  P
Sbjct: 945  ------LDEGGRFLTSTPHASIRWVSELIDFDRMEWKTSLLESFLN---ERDLRCILASP 995

Query: 719  --ATAPADKMIWAMERFGKLTVKTVYAYLKNNEKEMGQSSSVNYIALKHLWAAPLPSYLQ 546
              AT   D++ WA  +    +VKT Y   K    +    + V+      +W+  +   ++
Sbjct: 996  LSATPVPDELTWAFTKDATYSVKTAYMIGKGGNLDNFHQAWVD------IWSLDVSPKVR 1049

Query: 545  MFLWKLYMHVLPLGDRLAEKNMKGDFSCPFCNREMETAEHLFFTCDWTRTVWF---CSQV 375
             FLW+L    LP+   L  +++  D  CP+   E+ET  H  F C   R +W    C  +
Sbjct: 1050 HFLWRLCTTSLPVRSLLKHRHLTDDDLCPWGCGEIETQRHAIFDCPKMRDLWLDSGCQNL 1109

Query: 374  GLRINTTQQPHGLRNRIELYLSWCTSKDRDQCMAGTHIMYLLHYIWRARNELKFDKRNAN 195
              R           +  +L +SW  S D    + G    YL   IW  RN   F+ +   
Sbjct: 1110 CSR-------DASMSMCDLLVSW-RSLDGKLRIKGA---YLAWCIWGERNAKIFNNKTTP 1158

Query: 194  RDRII-RQSRVMADKCLDAFREDSLSFQLPSNLSKNSLEKLFPEIPIDSIVIRFDAS 27
               ++ R SR++ +    A R        P    +    + +   P DSI +  DAS
Sbjct: 1159 SSVLMQRVSRLVEENGSHARR-----IYQPLVPRRTGSPRQWIAPPADSIKLNVDAS 1210


>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1374

 Score =  517 bits (1332), Expect(2) = e-175
 Identities = 274/827 (33%), Positives = 455/827 (55%), Gaps = 2/827 (0%)
 Frame = -3

Query: 3738 MTIHA*NCREIGTTTAIQQLKDLIGRFNVDIMCLAETKANKEKIGYLSKKLKLEGHFAVP 3559
            M I + NC+ +G T  ++ L+++ G +  +++ L ETK  +  +  +   L       V 
Sbjct: 1    MRILSWNCQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLGFFDLHTVE 60

Query: 3558 AQGQSGGLAVLWKEGVELEILGASKNQITGKLANYFSTDDWFFSFVYGEPAAHNRNKVWN 3379
              G+SGGLA++WK+ V++++L + K  I   L   +   +++ + +YGEP    R ++W 
Sbjct: 61   PIGKSGGLALMWKDSVQIKVLQSDKRLIDALLI--WQDKEFYLTCIYGEPVQAERGELWE 118

Query: 3378 ELRGLAPLIPGPWCLFGDFNAIAQLNEKIGGKSTISKSMHEFNNLINDLGLVDLGFKGPK 3199
             L  L     GPW L GDFN +   +EKIGG +    S  EF  ++N  GL ++   G +
Sbjct: 119  RLTRLGLSRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHSGYQ 178

Query: 3198 FTWSNNRRIGDHVLE-RLDRAMASTEWIALFPHALVQTVANASSDHISLIINLDNKEERN 3022
            F+W  NR   D +++ RLDR +A+  W+ LFP A    +    SDH  LI NL     R 
Sbjct: 179  FSWYGNRN--DELVQCRLDRTVANQAWMELFPQAKATYLQKICSDHSPLINNLVGDNWRK 236

Query: 3021 PRPFKFFNMWLANDACKPVIEKAWNAITHDLPDHNLIHKLHKTRTDLSVWNKFVFGNIFT 2842
               FK+   W+  +  K ++   W+  +    +  ++ K+   R ++S W +    +   
Sbjct: 237  WAGFKYDKRWVQREGFKDLLCNFWSQQSTKT-NALMMEKIASCRREISKWKRVSKPSSAV 295

Query: 2841 NIKAAQKDLDTVLAK-PFSTKNYNKAKDIKANLLGWYEKEEDFWKQKSTFDWIKDGGKNT 2665
             I+  Q  LD    + PF  +   +   +K  L   Y  EE FW++KS   W+++G +NT
Sbjct: 296  RIQELQFKLDAATKQIPFDRRELAR---LKKELSQEYNNEEQFWQEKSRIMWMRNGDRNT 352

Query: 2664 RFYHLSTXXXXXXXXXXXXXXXDGEWREGRTDVGTSLNQYFTDIFTTDSPVRDNQIMDLF 2485
            +++H +T               +G       D+G     YF  +F ++      + ++  
Sbjct: 353  KYFHAATKNRRAQNRIQKLIDEEGREWTSDEDLGRVAEAYFKKLFASEDVGYTVEELENL 412

Query: 2484 KSIVSDRENEILISTPDQEDIWKVVKKMGSLKSPGPDGFQGVFYKKCWDIVGPAVVSFVQ 2305
              +VSD+ N  L++   +E++ +    +   K PGPDG  G  Y++ W+ +G  +   VQ
Sbjct: 413  TPLVSDQMNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWETMGDQITEMVQ 472

Query: 2304 DFFNTGYLNPKFNETYIALIPKVVNPDHVSKFRPISLCNFGYKVVSKILANRLKGLMNRI 2125
             FF +G +    N+T I LIPK++  + ++ FRPISLCN  YKV+ K++ANRLK ++  +
Sbjct: 473  AFFRSGSIEEGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKILPSL 532

Query: 2124 ISPFQGAFIKGRSIGDNVGLACEVFHNMKNMKSKKEGWCALKMDMAKAYDRVEWAFVDNI 1945
            IS  Q AF+KGR I DN+ +A E+ H + +     E + A+K D++KAYDRVEW F++  
Sbjct: 533  ISETQAAFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKA 592

Query: 1944 FEKLGFNNKWRHMIHQCLSTVSFQIMLNGSPLEKINPERGLRQGDPLSPYLFILVSEALS 1765
               LGF + W  +I +C+ +V +Q+++NG+P  +I P RGLRQGDPLSPYLF++ +E L 
Sbjct: 593  MRGLGFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLV 652

Query: 1764 RLIAQAESKEELHGVKIRRNSPALTHLLYADDLILFIKANLAESGQLKHILECYCRASGQ 1585
            +++  AE K ++ G+K+ R +P ++HLL+ADD + + K N    GQ+  I+E Y  ASGQ
Sbjct: 653  KMLQSAEQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQ 712

Query: 1584 KINYEKSSVFFSRNVSYRQKIKLKRFWRMKNFQPKEKYLGVPIMLSRKKAEDFDYLVDRI 1405
            ++NY KSS++F +++S  ++  +KR   ++    +  YLG+P      K     YL DR+
Sbjct: 713  RVNYLKSSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRL 772

Query: 1404 HRKVKGWKAKALSQAGRTTLIQAVIQATPLYVMSTYLLPVATCNKMD 1264
             +KV GW++  LS  G+  L++AV  A P Y MS + +P   C +++
Sbjct: 773  GKKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIE 819



 Score =  128 bits (322), Expect(2) = e-175
 Identities = 101/380 (26%), Positives = 162/380 (42%), Gaps = 18/380 (4%)
 Frame = -1

Query: 1265 IRHICRDFWWNGTEQSKSVHTIGWEQICKSKQEGGLGLRKTRDMNKAMLAKLPWKAATDV 1086
            I  +  +FWW   ++ + +H   W  + + K  GGLG ++    N A+L K  W+  T+ 
Sbjct: 818  IESVMAEFWWKNKKEGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEK 877

Query: 1085 HSLWTQTMFSIYGKHWIGDVLKPP--DQASYFWKGIHKVFNSISGGLMWRIGKGTTTSIL 912
             SL  +   S Y      D L  P   + S+ WK I++    I  G+   IG G T ++ 
Sbjct: 878  DSLMAKVFKSRYFSK--SDPLNAPLGSRPSFAWKSIYEAQVLIKQGIRAVIGNGETINVW 935

Query: 911  KDPWIKCLNKPMTLAELG-----VVDNSLNNLH-VSDLFLPDGSGWDTVKLNHWFHPFLS 750
             DPWI    KP   A+       V   + N++H V DL LPDG  W+   ++  F     
Sbjct: 936  TDPWIGA--KPAKAAQAVKRSHLVSQYAANSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQ 993

Query: 749  QLMQEIVVRP-ATAPADKMIWAMERFGKLTVKTVYAYL------KNNEKEMGQSSSVNYI 591
            + +  + +RP      D+  W   R G  +VK+ Y  +      +NN +E+ Q S     
Sbjct: 994  ENI--LALRPGGKETRDRFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQEVLQPSLDP-- 1049

Query: 590  ALKHLWAAPLPSYLQMFLWKLYMHVLPLGDRLAEKNMKGDFSCPFCNREMETAEHLFFTC 411
              + +W   +P  +  FLW+   + L +   LA +++  + SC  C    ET  HL F C
Sbjct: 1050 IFQQIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKC 1109

Query: 410  DWTRTVWFCSQVGLRINTTQQPHGLRNRIELYLSWCTSKDRDQCMAGTH---IMYLLHYI 240
             + R  W  S +             RN     +    S  + Q     H   I ++L  +
Sbjct: 1110 PFARLTWAISPLPAPPGGEWAESLFRN-----MHHVLSVHKSQPEESDHHALIPWILWRL 1164

Query: 239  WRARNELKFDKRNANRDRII 180
            W+ RN+L F  R     ++I
Sbjct: 1165 WKNRNDLVFKGREFTAPQVI 1184