BLASTX nr result

ID: Coptis25_contig00004956 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00004956
         (481 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003545054.1| PREDICTED: protein FAR1-RELATED SEQUENCE 5-l...    61   1e-07
emb|CBI36356.3| unnamed protein product [Vitis vinifera]               59   4e-07
emb|CAN78024.1| hypothetical protein VITISV_031334 [Vitis vinifera]    59   4e-07
ref|XP_003517928.1| PREDICTED: protein FAR1-RELATED SEQUENCE 5-l...    57   1e-06
ref|XP_002527270.1| conserved hypothetical protein [Ricinus comm...    57   1e-06

>ref|XP_003545054.1| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max]
          Length = 777

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
 Frame = -3

Query: 356 EYFDEAKDGVAENNIN---GSQTVEIEEGDYEDKADKLCPCAGMEFDSPDEAXXXXXXYA 186
           EY D+   G+ E  +    G   + + EGD  D    L PC GMEF+S + A      YA
Sbjct: 20  EYDDDDGGGIDEEELGVATGGGEIYLPEGDLLD----LEPCEGMEFESEEAAKAFYNSYA 75

Query: 185 RRIGFSVRRYSTSKPQLIKEINARSYCCSLQGFSN-SSKPFEERQ--KNRSNSRTGCKA 18
           RR+GFS R  S+ + +    I  R + C+ +GF N + K  ++R+  + R+ +R GCKA
Sbjct: 76  RRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREIKRPRTITRVGCKA 134


>emb|CBI36356.3| unnamed protein product [Vitis vinifera]
          Length = 731

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 10/166 (6%)
 Frame = -3

Query: 470 SPNQYNIDFGFDNIKGNEEVFTD------PNQFEEIYEDD----NYNCEYFDEAKDGVAE 321
           SPN  N++   +    N E   D       N+ E++ E++    + +CE   E +    E
Sbjct: 15  SPNP-NLEITMEEGSENSEQLLDNEGNDLENECEQVLENEGNDLDNDCEQVFEIEGNDHE 73

Query: 320 NNINGSQTVEIEEGDYEDKADKLCPCAGMEFDSPDEAXXXXXXYARRIGFSVRRYSTSKP 141
           N  +    +   E       + L P  GMEF+S D+A      YA+ +GF++R  S+   
Sbjct: 74  NVTDFDTRIVDGENGMSQGKNYLPPVVGMEFESYDDAYNYYNCYAKELGFAIRVKSSWTK 133

Query: 140 QLIKEINARSYCCSLQGFSNSSKPFEERQKNRSNSRTGCKAIMYTR 3
           +  KE      CC+ +GF    K  +E    R  +RTGC A++  R
Sbjct: 134 RNSKEKRGAVLCCNCEGF----KTIKEANSRRKETRTGCLAMIRLR 175


>emb|CAN78024.1| hypothetical protein VITISV_031334 [Vitis vinifera]
          Length = 706

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 10/166 (6%)
 Frame = -3

Query: 470 SPNQYNIDFGFDNIKGNEEVFTD------PNQFEEIYEDD----NYNCEYFDEAKDGVAE 321
           SPN  N++   +    N E   D       N+ E++ E++    + +CE   E +    E
Sbjct: 15  SPNP-NLEITMEEGSENSEQLLDNEGNDLENECEQVLENEGNDLDNDCEQVFEIEGNDHE 73

Query: 320 NNINGSQTVEIEEGDYEDKADKLCPCAGMEFDSPDEAXXXXXXYARRIGFSVRRYSTSKP 141
           N  +    +   E       + L P  GMEF+S D+A      YA+ +GF++R  S+   
Sbjct: 74  NVTDFDTRIVDGENGMSQGKNYLPPVVGMEFESYDDAYNYYNCYAKELGFAIRVKSSWTK 133

Query: 140 QLIKEINARSYCCSLQGFSNSSKPFEERQKNRSNSRTGCKAIMYTR 3
           +  KE      CC+ +GF    K  +E    R  +RTGC A++  R
Sbjct: 134 RNSKEKRGAVLCCNCEGF----KTIKEANSRRKETRTGCLAMIRLR 175


>ref|XP_003517928.1| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max]
          Length = 776

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
 Frame = -3

Query: 356 EYFDEAKDGVAENNIN---GSQTVEIEEGDYEDKADKLCPCAGMEFDSPDEAXXXXXXYA 186
           EY D+   G+ E  +    G   + + E D  D    L PC GMEF+S + A      YA
Sbjct: 20  EYDDDDGGGIDEEELGVATGGGEIYLPEVDLLD----LEPCEGMEFESEEAAKAFYNSYA 75

Query: 185 RRIGFSVRRYSTSKPQLIKEINARSYCCSLQGFSN-SSKPFEERQ--KNRSNSRTGCKA 18
           RR+GFS R  S+ + +    I  R + C+ +GF N + K  ++R+  + R+ +R GCKA
Sbjct: 76  RRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREIKRPRTITRVGCKA 134


>ref|XP_002527270.1| conserved hypothetical protein [Ricinus communis]
           gi|223533363|gb|EEF35114.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 212

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
 Frame = -3

Query: 332 GVAENNINGSQTVEIEEGDYEDKADKLCPCAGMEFDSPDEAXXXXXXYARRIGFSVRRYS 153
           G  ++++   + +E  +GD       L P  GMEFDS D+A      YARR+GF VR   
Sbjct: 10  GAVDSSLGVGERIESVQGD-----GILEPYVGMEFDSEDDARKFYVDYARRVGFVVRIMQ 64

Query: 152 TSKPQLIKEINARSYCCSLQGFS-NSSKPFEERQKNRSNSRTGCKAIMYTR 3
             +  +  +  AR   C+ QGFS N        +K RS++R GCKA +  +
Sbjct: 65  RRRSGIDGKTLARRLGCNKQGFSPNHRNAMRPDKKPRSSAREGCKATILVK 115


Top