BLASTX nr result
ID: Coptis25_contig00004827
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00004827
(3449 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas... 55 1e-07
emb|CCI61487.1| unnamed protein product [Arabidopsis halleri] 59 1e-06
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas] 58 4e-06
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas] 58 4e-06
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas] 58 5e-06
>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
Endonuclease/exonuclease/phosphatase [Medicago
truncatula]
Length = 1246
Score = 55.5 bits (132), Expect(2) = 1e-07
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Frame = +3
Query: 2721 GITRIGAIYRNRSGYFMLVLWRKLGVNTNYLAECLAILESMECAMQRGWSKLWIEADSEV 2900
G+ G ++R+ SG F+ +G+ + + AE LA + ++E A GW LW+E+DS
Sbjct: 1034 GLAACGGLFRDSSGSFLGAFSCNIGLASVFHAETLAFILALEHAAHHGWRNLWLESDSTS 1093
Query: 2901 AISSFGTRN-VPWCMKNIWDICQ*KLTTCMQNYAYMEGSK 3017
A+ F + V W ++N W Q + ++ EG++
Sbjct: 1094 ALMIFSNSSLVQWLLRNRWHNAQRLGIQVISSHILHEGNR 1133
Score = 29.3 bits (64), Expect(2) = 1e-07
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 2614 VQPRWITHQTVKQCTWELPEPDTIKINCDGASMGNRA 2724
V PR ++ + W+ P P +K+N DG+ +G A
Sbjct: 1000 VSPRHRKYKDIILVLWKNPSPPLLKVNTDGSVVGGLA 1036
>emb|CCI61487.1| unnamed protein product [Arabidopsis halleri]
Length = 195
Score = 58.5 bits (140), Expect(2) = 1e-06
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Frame = +3
Query: 2712 G*PGITRIGAIYRNRSGYFMLVLWRKLGVNTNYLAECLAILESMECAMQRGWSKLWIEAD 2891
G G IG I+RN F+L +G T+ +AE A+ +E ++ GW+ LW+E D
Sbjct: 46 GREGQASIGGIFRNHKAEFLLGYSESIGEATSTMAEFAALKRGLELVLENGWTDLWLEGD 105
Query: 2892 SEVAISSFGTRNVPWCMK-----NIWDICQ*KLTTCMQNYAYMEGSKL 3020
+++ + R C K N ++ L+ C+ ++ Y EG+++
Sbjct: 106 AKIIMDIISKRGKLRCEKTNKHVNYINVVMPGLSNCVLSHVYREGNRV 153
Score = 23.1 bits (48), Expect(2) = 1e-06
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 2635 HQTVKQCTWELPEPDTIKINCDGA 2706
H+ + W+ PE IK+N DG+
Sbjct: 21 HKQPVKVVWKKPEIGWIKLNFDGS 44
>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
Length = 1898
Score = 58.2 bits (139), Expect(2) = 4e-06
Identities = 55/238 (23%), Positives = 89/238 (37%), Gaps = 11/238 (4%)
Frame = +3
Query: 2226 KRGIHLASRYYCCQQKSEDLKHIIWHCDSARKCWTWVADKFKFSANFYSSTEAKSKSVSN 2405
+RG+ A+ C ++ E L H+ C A CW F + + + K+ +
Sbjct: 1601 RRGLADAASCPVCGEEDETLDHLFRRCLLAEACWDSAVPPLTFQTSNHLHMHSWMKAACS 1660
Query: 2406 SPIMKHL---WNAAILSCLTILWNHRNRLVFDNK--------S*SIQFCHKGISNIIQQT 2552
S W+ L LW RNRLVFDN + S + + ++T
Sbjct: 1661 SQQKDGYGTNWSLIFPYILWNLWKARNRLVFDNNITAPSDILNRSFMESSEARCLLAKRT 1720
Query: 2553 GVL*KAQMWSATDIEVLNNWSPTAMDYSSNSETMYLGVA*TRYNQN*L*WCING*PGITR 2732
G+ Q W WSP A + T+ N + +
Sbjct: 1721 GLQTAFQTWVV--------WSPPAAGF-------------TKLNSD---GACKSHSHLAS 1756
Query: 2733 IGAIYRNRSGYFMLVLWRKLGVNTNYLAECLAILESMECAMQRGWSKLWIEADSEVAI 2906
G + RN +G ++ +G ++LAE + E + A RG++KL E DSE +
Sbjct: 1757 AGGLLRNENGLWVAGYTCNIGTANSFLAELWGLREGLLLAKNRGFTKLIAETDSEAVV 1814
Score = 21.6 bits (44), Expect(2) = 4e-06
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 2989 KITPTWREANFSADKATNHAISMTYTSTIL 3078
K+T RE N AD N S ++ +TIL
Sbjct: 1845 KVTHILREGNQCADFLANLGQSSSWGTTIL 1874
>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 58.2 bits (139), Expect(2) = 4e-06
Identities = 55/238 (23%), Positives = 89/238 (37%), Gaps = 11/238 (4%)
Frame = +3
Query: 2226 KRGIHLASRYYCCQQKSEDLKHIIWHCDSARKCWTWVADKFKFSANFYSSTEAKSKSVSN 2405
+RG+ A+ C ++ E L H+ C A CW F + + + K+ +
Sbjct: 1069 RRGLADAASCPVCGEEDETLDHLFRRCLLAEACWDSAVPPLTFQTSNHLHMHSWMKAACS 1128
Query: 2406 SPIMKHL---WNAAILSCLTILWNHRNRLVFDNK--------S*SIQFCHKGISNIIQQT 2552
S W+ L LW RNRLVFDN + S + + ++T
Sbjct: 1129 SQQKDGYSTNWSLIFPYILWNLWKARNRLVFDNNITAPSDILNRSFMESSEARCLLAKRT 1188
Query: 2553 GVL*KAQMWSATDIEVLNNWSPTAMDYSSNSETMYLGVA*TRYNQN*L*WCING*PGITR 2732
G+ Q W WSP A + T+ N + +
Sbjct: 1189 GLQTAFQTWVV--------WSPPAAGF-------------TKLNSD---GACKSHSHLAS 1224
Query: 2733 IGAIYRNRSGYFMLVLWRKLGVNTNYLAECLAILESMECAMQRGWSKLWIEADSEVAI 2906
G + RN +G ++ +G ++LAE + E + A RG++KL E DSE +
Sbjct: 1225 AGGLLRNENGLWVAGYTCNIGTANSFLAELWGLREGLLLAKNRGFTKLIAETDSEAVV 1282
Score = 21.6 bits (44), Expect(2) = 4e-06
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 2989 KITPTWREANFSADKATNHAISMTYTSTIL 3078
K+T RE N AD N S ++ +TIL
Sbjct: 1313 KVTHILREGNQCADFLANLGQSSSWGTTIL 1342
>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 57.8 bits (138), Expect(2) = 5e-06
Identities = 55/238 (23%), Positives = 89/238 (37%), Gaps = 11/238 (4%)
Frame = +3
Query: 2226 KRGIHLASRYYCCQQKSEDLKHIIWHCDSARKCWTWVADKFKFSANFYSSTEAKSKSVSN 2405
+RG+ A+ C ++ E L H+ C A CW F + + + K+ +
Sbjct: 1069 RRGLADAASCPVCGEEDETLDHLFRRCLLAEACWDSAVPPLTFQTSNHLHMHSWMKAACS 1128
Query: 2406 SPIMKHL---WNAAILSCLTILWNHRNRLVFDNK--------S*SIQFCHKGISNIIQQT 2552
S W+ L LW RNRLVFDN + S + + ++T
Sbjct: 1129 SQQKDGYGTNWSLIFPYILWNLWKARNRLVFDNNITAPSDILNRSFMESSEARCLLAKRT 1188
Query: 2553 GVL*KAQMWSATDIEVLNNWSPTAMDYSSNSETMYLGVA*TRYNQN*L*WCING*PGITR 2732
G+ Q W WSP A + T+ N + +
Sbjct: 1189 GLQTAFQTWVV--------WSPPAAGF-------------TKLNSD---GACKSHSHLAS 1224
Query: 2733 IGAIYRNRSGYFMLVLWRKLGVNTNYLAECLAILESMECAMQRGWSKLWIEADSEVAI 2906
G + RN +G ++ +G ++LAE + E + A RG++KL E DSE +
Sbjct: 1225 AGGLLRNENGLWVAGYICNIGTANSFLAELWGLREGLLLAKNRGFTKLIAETDSEAVV 1282
Score = 21.6 bits (44), Expect(2) = 5e-06
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 2989 KITPTWREANFSADKATNHAISMTYTSTIL 3078
K+T RE N AD N S ++ +TIL
Sbjct: 1313 KVTHILREGNQCADFLANLGQSSSWGTTIL 1342