BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00004817
         (608 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285331.1| PREDICTED: cytochrome c oxidase subunit 5b-2...   174   1e-41
gb|AFU52881.1| cytochrome C oxidase subunit Vb [Vitis vinifera]       171   1e-40
ref|XP_002517575.1| cytochrome C oxidase, putative [Ricinus comm...   165   7e-39
dbj|BAJ53249.1| JHL25H03.12 [Jatropha curcas]                         164   1e-38
ref|XP_002299612.1| predicted protein [Populus trichocarpa] gi|1...   160   2e-37

>ref|XP_002285331.1| PREDICTED: cytochrome c oxidase subunit 5b-2, mitochondrial [Vitis
           vinifera] gi|297743391|emb|CBI36258.3| unnamed protein
           product [Vitis vinifera]
          Length = 176

 Score =  174 bits (441), Expect = 1e-41
 Identities = 94/166 (56%), Positives = 112/166 (67%), Gaps = 3/166 (1%)
 Frame = -1

Query: 557 MWRRFISNQVQTRTRSDLKHFNRSVSIAKHHILN--HQASSSPLYSPFLTTSSYAFSRQF 384
           MWR  +S Q+QT  RS      RS +     +    +++  SP  +PF  T+S  FSRQF
Sbjct: 1   MWRGRLSAQLQTLARS------RSAANLTRLVTGDINRSFISPSPAPFRRTASL-FSRQF 53

Query: 383 SSDS-DTGLSEGKKKVEDVMPIATGHXXXXXXXXXXXXXXXDINHPVGPFGTKEEPAVIK 207
           S++S D  +S+ KK+VEDVMPIATGH               D +HPVGPFGTKE PAV++
Sbjct: 54  SAESADNAVSKEKKRVEDVMPIATGHEREELEAALDGRDILDADHPVGPFGTKEAPAVVQ 113

Query: 206 SYYDKRIVGCPGDEGEDEHDVVWFWLEKGKPHACPVCDQYFTLEVV 69
           SYYDKRIVGCPG EGEDEHDVVWFWLEKGK H CPVC QYFTLEV+
Sbjct: 114 SYYDKRIVGCPGGEGEDEHDVVWFWLEKGKSHECPVCSQYFTLEVI 159


>gb|AFU52881.1| cytochrome C oxidase subunit Vb [Vitis vinifera]
          Length = 176

 Score =  171 bits (432), Expect = 1e-40
 Identities = 91/166 (54%), Positives = 111/166 (66%), Gaps = 3/166 (1%)
 Frame = -1

Query: 557 MWRRFISNQVQTRTRSDLKHFNRSVSIAKHHILN--HQASSSPLYSPFLTTSSYAFSRQF 384
           MWR  +S Q+QT  RS      RS +     +    +++  SP  +PF  T+S  FSRQF
Sbjct: 1   MWRGRLSAQLQTLARS------RSAANLTRLVTGDINRSFISPSPAPFRRTASL-FSRQF 53

Query: 383 SSDS-DTGLSEGKKKVEDVMPIATGHXXXXXXXXXXXXXXXDINHPVGPFGTKEEPAVIK 207
           S++S D  +S+ KK++EDVMPIATGH               D +HPVGPFGTKE PAV++
Sbjct: 54  SAESADNAVSKEKKRIEDVMPIATGHEREELEAALDGRDILDADHPVGPFGTKEAPAVVQ 113

Query: 206 SYYDKRIVGCPGDEGEDEHDVVWFWLEKGKPHACPVCDQYFTLEVV 69
           SYYDKRI GCPG EGEDEHDVVWFWLEKG+ H CPVC QYFTLEV+
Sbjct: 114 SYYDKRIAGCPGGEGEDEHDVVWFWLEKGESHECPVCSQYFTLEVI 159


>ref|XP_002517575.1| cytochrome C oxidase, putative [Ricinus communis]
           gi|223543207|gb|EEF44739.1| cytochrome C oxidase,
           putative [Ricinus communis]
          Length = 171

 Score =  165 bits (417), Expect = 7e-39
 Identities = 86/165 (52%), Positives = 106/165 (64%), Gaps = 2/165 (1%)
 Frame = -1

Query: 557 MWRRFISNQVQTRTRSDLKHFNRSVSIAKHHILNHQASSSPLYSPFLTTSSYA--FSRQF 384
           MWRR +S+ ++T   S     +R+ S A          +SP +  FL+ S  A  F R F
Sbjct: 1   MWRRSLSSHLKTLAASSS---SRTTSAAASRF------ASPKHRSFLSPSPSASIFQRYF 51

Query: 383 SSDSDTGLSEGKKKVEDVMPIATGHXXXXXXXXXXXXXXXDINHPVGPFGTKEEPAVIKS 204
           ++++  G    K++VED MPIATGH               +INHPVGPFGTKE PAV+KS
Sbjct: 52  TAEAADGAV--KRRVEDAMPIATGHEREELEAELQGRDILEINHPVGPFGTKEAPAVVKS 109

Query: 203 YYDKRIVGCPGDEGEDEHDVVWFWLEKGKPHACPVCDQYFTLEVV 69
           YYDKR+VGCPG EGEDEHDV+WFWL+KGKPH CPVC QYF LEVV
Sbjct: 110 YYDKRLVGCPGGEGEDEHDVIWFWLKKGKPHECPVCTQYFVLEVV 154


>dbj|BAJ53249.1| JHL25H03.12 [Jatropha curcas]
          Length = 165

 Score =  164 bits (415), Expect = 1e-38
 Identities = 88/163 (53%), Positives = 106/163 (65%)
 Frame = -1

Query: 557 MWRRFISNQVQTRTRSDLKHFNRSVSIAKHHILNHQASSSPLYSPFLTTSSYAFSRQFSS 378
           MWRR +S+Q++T          RS + A      +++  SP      + S+  F R F++
Sbjct: 1   MWRRAVSSQLKTLASC------RSAAAAARFASPNRSIISP------SPSASLFHRYFNA 48

Query: 377 DSDTGLSEGKKKVEDVMPIATGHXXXXXXXXXXXXXXXDINHPVGPFGTKEEPAVIKSYY 198
           D+ +G S GK+ VED+MPIATG                +INHPVGPFGTKE PAV+KSYY
Sbjct: 49  DAASG-SVGKR-VEDIMPIATGSEREELEAELQGKDILEINHPVGPFGTKEAPAVVKSYY 106

Query: 197 DKRIVGCPGDEGEDEHDVVWFWLEKGKPHACPVCDQYFTLEVV 69
           DKRIVGCPG EGEDEHDVVWFWLEKGKPH CPVC QYF LEVV
Sbjct: 107 DKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCTQYFVLEVV 149


>ref|XP_002299612.1| predicted protein [Populus trichocarpa] gi|118488066|gb|ABK95853.1|
           unknown [Populus trichocarpa]
           gi|222846870|gb|EEE84417.1| predicted protein [Populus
           trichocarpa]
          Length = 168

 Score =  160 bits (405), Expect = 2e-37
 Identities = 89/165 (53%), Positives = 101/165 (61%), Gaps = 2/165 (1%)
 Frame = -1

Query: 557 MWRRFISNQVQTRTRSDLKHFNRSVS--IAKHHILNHQASSSPLYSPFLTTSSYAFSRQF 384
           MWRR  S+ ++T   S      RS    +    I+N   S+S             F+R F
Sbjct: 1   MWRRLASSHLRTLVTSTSTTSARSTQSLLLNRSIINPSPSTS------------LFNRYF 48

Query: 383 SSDSDTGLSEGKKKVEDVMPIATGHXXXXXXXXXXXXXXXDINHPVGPFGTKEEPAVIKS 204
           S+DS  G    KK+VEDVMPIATGH               DI++P GPFGTKE+PAVIKS
Sbjct: 49  SADSVDGAV--KKRVEDVMPIATGHEREELEAELEGKKLLDIDYPDGPFGTKEKPAVIKS 106

Query: 203 YYDKRIVGCPGDEGEDEHDVVWFWLEKGKPHACPVCDQYFTLEVV 69
           YYDKRIVGCPG EGEDEHDVVWFWLEKGKPH CPVC Q F LEVV
Sbjct: 107 YYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCTQNFVLEVV 151