BLASTX nr result
ID: Coptis25_contig00004804
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00004804
(1597 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002331320.1| f-box family protein [Populus trichocarpa] g... 102 2e-19
emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera] 100 1e-18
ref|NP_567414.1| putative F-box/LRR-repeat protein [Arabidopsis ... 98 7e-18
ref|XP_002331321.1| predicted protein [Populus trichocarpa] gi|2... 97 2e-17
ref|XP_002331319.1| f-box family protein [Populus trichocarpa] g... 96 3e-17
>ref|XP_002331320.1| f-box family protein [Populus trichocarpa]
gi|222873903|gb|EEF11034.1| f-box family protein [Populus
trichocarpa]
Length = 453
Score = 102 bits (255), Expect = 2e-19
Identities = 101/348 (29%), Positives = 159/348 (45%), Gaps = 30/348 (8%)
Frame = +3
Query: 78 SDEDIISSLPEQILHHILSYLDMKEVLLTSLLSTKWRNVWRSVPNLIFSESFWKDPVRKV 257
++ED IS+LP +LHHILS++D +V+ T +LS +W NVW+S P L F+ + +
Sbjct: 32 NNEDRISTLPNVLLHHILSFVDAVQVVQTCVLSKRWMNVWKSHPYLDFNFETFSSLINSD 91
Query: 258 LV---LSKFIYFVDTVLLLRGGSNINKLSITSSKYNNLNQIQRLITYAVMRNAKEIHM-- 422
++ F F+ VL+ R KLS+ + + + ++ LI YAV + +EI +
Sbjct: 92 YYDDDMNNFTDFIYHVLVRRNNVKAFKLSLDTRRDCQYSVVESLIYYAVKHHVEEISINT 151
Query: 423 ----VGLDIYRAKPDLLSL------------------LARVNTLHLVSVRISSFDTQEWL 536
V + + R D SL L + TLHL + +FD + +
Sbjct: 152 AHWDVPIVLPRCFFDCESLRSLKLKVDGGLALPKSLGLQSLKTLHLGGAQ--NFDGK--I 207
Query: 537 HLKSQSLENLIIED--CRGFRCLGIYTPQLKYLKVENSREEYNPSGL-IEIDAPKLTSLV 707
+LENL IED I+ LK L++ N R G + + APKLTS
Sbjct: 208 FSSCPNLENLTIEDICLNVIENFNIHALSLKSLEILNWRYNRIKQGCKVMLVAPKLTSFK 267
Query: 708 WKGYMYKDYIFSSPSSLVTVEVDTKINSVDEHEHLNTXXXXXXXXXXXXXAIPSPDVVFG 887
+ G +F S +L +++ +N V + H + + G
Sbjct: 268 FDG---NTPLFWSDVNLTSLD---DVNVVLQRYHHSHNYPFYVVEDEYISEEDETEQGLG 321
Query: 888 KCLRNILKELTNAKSLILSAHGFQTFSEVPDEINSLPSSFHNLKFLKL 1031
L +L + +AKSL LS + + SEVP ++ PS F NLK+LKL
Sbjct: 322 LNLIKMLHQFCSAKSLTLSMNIIEILSEVPAALDKHPSPFSNLKYLKL 369
>emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera]
Length = 607
Score = 100 bits (248), Expect = 1e-18
Identities = 123/468 (26%), Positives = 194/468 (41%), Gaps = 35/468 (7%)
Frame = +3
Query: 87 DIISSLPEQILHHILSYLDMKEVLLTSLLSTKWRNVWRSVPNLIFSESFWKDPVRKVLVL 266
DIIS+LP+++L HILS+L K + TS+LS +WR +W SVP L F + W +P V +
Sbjct: 10 DIISNLPDELLCHILSFLPTKFAVGTSILSKRWRYLWASVPILDFDDELWLNPSTLVELE 69
Query: 267 SKFIY---FVDTVLLLRGGSNINKLSITSSKYNNLNQIQRLITYAVMRNAKEIHMVGLDI 437
+ I FVD VL S I K + + NNL+ + I A+ R +E+ + L
Sbjct: 70 ERIIMFQNFVDGVLRHSEVSCIKKFRL-GYRDNNLDSVYSWICIALERRVQELDLHLLID 128
Query: 438 YRAK-PDLLSL----------------------LARVNTLHLVSVRISSFDTQEWLHLKS 548
+R + P + + L + LHL SV S D+ + L
Sbjct: 129 WRVELPPMFFICKTLVVVKLSCALFLDIPTTVWLPSLKALHLKSVEYSDDDSIQKLLSGC 188
Query: 549 QSLENLII--EDCRGFRCLGIYTPQLKYLKV-------ENSREEYNPSGLIEIDAPKLTS 701
LE L+I E+ + + P LK L++ + E+ + + +DAP L
Sbjct: 189 PVLEELVIEREERDNQWVVNVSNPSLKILRIFFFTDGFAHPYEQEDQDYKVVVDAPNLEY 248
Query: 702 LVWKGYMYKDYIFSSPSSLVTVEVDTKINSVDEHEHLNTXXXXXXXXXXXXXAIPSPDVV 881
L Y+ KDY SLV +D + +S + E + + +
Sbjct: 249 LSITDYLSKDYFVKDLPSLVKAFIDVEQDSEEFEESPH-----------------NGGIS 291
Query: 882 FGKCLRNILKELTNAKSLILSAHGFQTFSEVPDEINSLPSSFHNLKFLKLTDLDNSGNIC 1061
+ + +L ++N K L L+ + S + LP +FHN+ L+ + N
Sbjct: 292 YHGPIYELLGRISNVKCLSLTGVTLDSLSGTIGDY-KLP-TFHNMTRLEFLFI-GGFNWD 348
Query: 1062 ALAKLLKSFPCLETLVLERTQAISTTTEEGGDWGXXXXXXXXXXHLKSIEIQDLEGCXXX 1241
L L S P LE LV+E E G HLK IEI+ + G
Sbjct: 349 FLPNFLHSSPNLEALVIETGYTNELIPE--GWLMPLQVPACLVLHLKEIEIRRIVGEDYE 406
Query: 1242 XXXXXXXXXXAMVLESITIKVREALSEYKEKELGEFAKKIQSMSKASQ 1385
A VL+ +TI E+ Y ++E KK+ + + S+
Sbjct: 407 LEAVEYLLKNAEVLQQMTIDCHES---YMDQEFC-VCKKLLGLPRGSR 450
>ref|NP_567414.1| putative F-box/LRR-repeat protein [Arabidopsis thaliana]
gi|75318094|sp|O23257.1|FBL72_ARATH RecName:
Full=Putative F-box/LRR-repeat protein At4g13960
gi|2244752|emb|CAB10175.1| hypothetical protein
[Arabidopsis thaliana] gi|7268100|emb|CAB78438.1|
hypothetical protein [Arabidopsis thaliana]
gi|332657951|gb|AEE83351.1| putative F-box/LRR-repeat
protein [Arabidopsis thaliana]
Length = 434
Score = 97.8 bits (242), Expect = 7e-18
Identities = 105/360 (29%), Positives = 160/360 (44%), Gaps = 17/360 (4%)
Frame = +3
Query: 87 DIISSLPEQILHHILSYLDMKEVLLTSLLSTKWRNVWRSVPNLIFSESFWKDPVR----K 254
D +SSLP+++L+HILS+L KE LTS+LS +WRN++ VPNL +S + P +
Sbjct: 2 DHVSSLPDEVLYHILSFLTTKEAALTSILSKRWRNLFTFVPNLDIDDSVFLHPQEGKEDR 61
Query: 255 VLVLSKFIYFVDTVLLLRGGSNINKLSITSSKYNNLNQIQRLITYAVMRNAKEIHMVGLD 434
+ F+ FVD VL L+G S I KLS+ + +++ I+ A+ R E+
Sbjct: 62 YEIQKSFMKFVDRVLALQGNSPIKKLSLKLRTGFDSHRVDGWISNALARGVTEL------ 115
Query: 435 IYRAKPDLLSLLARVNTLHLVSVRISSFDTQEWL---HLKSQSLENLIIEDCR------- 584
DLL +L V TL L SVR+ +WL + L+ L++ R
Sbjct: 116 ------DLLIILNLV-TLKLNSVRV------DWLAAGDIFLPMLKTLVLHSVRLCVDNVN 162
Query: 585 -GFRCLGIYTPQLKYLKVENSREEYNPS-GLIEIDAPKLTSLVWKGYMYKDYIFSSPSSL 758
G + + + LK L V YN G +D P L + Y+ DY +L
Sbjct: 163 WGGKDVNVSNASLKILTV-----NYNICLGTFSVDTPSLVYFCFTEYVAIDYPVVIMQNL 217
Query: 759 VTVEVDTKINSVDEHEHLNTXXXXXXXXXXXXXAIPSPDVVFGKC-LRNILKELTNAKSL 935
+ + D+ E DVV + ++K + N + +
Sbjct: 218 FEARISLLVTQ-DQIERARAPNIDWV----------EDDVVLRLVNMEKLIKGIRNVQYM 266
Query: 936 ILSAHGFQTFSEVPDEINSLPSSFHNLKFLKLTDLDNSGNICALAKLLKSFPCLETLVLE 1115
LS + + S S+P F+NLK L L + G A+ LL++ P LETLVLE
Sbjct: 267 YLSPNTLEVLSLC---CESMP-VFNNLKSLTLKSHKSRG-WQAMPVLLRNCPHLETLVLE 321
>ref|XP_002331321.1| predicted protein [Populus trichocarpa] gi|222873904|gb|EEF11035.1|
predicted protein [Populus trichocarpa]
Length = 378
Score = 96.7 bits (239), Expect = 2e-17
Identities = 98/349 (28%), Positives = 155/349 (44%), Gaps = 31/349 (8%)
Frame = +3
Query: 78 SDEDIISSLPEQILHHILSYLDMKEVLLTSLLSTKWRNVWRSVPNLIFSESFWKDPVRKV 257
++ED IS+LP +LH ILS++D +V+ T +LS +W NVW+S P L F+ + +
Sbjct: 13 NNEDRISTLPNVLLHRILSFVDAVQVVQTCVLSKRWMNVWKSHPYLDFNFETFSSLINSD 72
Query: 258 LV---LSKFIYFVDTVLLLRGGSNINKLSITSSKYNNLNQIQRLITYAVMRNAKEIHM-- 422
+ F F++ VL+ R K+S+ + + ++ LI YAV +A+EI +
Sbjct: 73 YYEDEMVNFTDFINQVLVRRNNFKAIKISLDLCGHTRYSLVESLIYYAVKHHAEEICIDT 132
Query: 423 -----------------------VGLDIYRAKPDLLSLLARVNTLHLVSVRISSFDTQEW 533
+ +D A P L L + TLHL + +FD +
Sbjct: 133 ACRDVPIVLPRCFFNCESLRSLKLRIDGGIALPKSLG-LPSLKTLHLGGAQ--NFDGK-- 187
Query: 534 LHLKSQSLENLIIED--CRGFRCLGIYTPQLKYLKVENSREEYNPSGL-IEIDAPKLTSL 704
+ +LENL IED I+ LK L++ N R G + + APKLTS
Sbjct: 188 IFSSCPNLENLTIEDICLNTIENFNIHALNLKSLEILNWRYSRIMRGCKVMLFAPKLTSF 247
Query: 705 VWKGYMYKDYIFSSPSSLVTVEVDTKINSVDEHEHLNTXXXXXXXXXXXXXAIPSPDVVF 884
+ G +F S +L +++ +N V + + F
Sbjct: 248 KFDG---NTPLFWSEVNLTSLD---DVNVVLQRYYYRHDYQFYVDEDEYISGEDETKQGF 301
Query: 885 GKCLRNILKELTNAKSLILSAHGFQTFSEVPDEINSLPSSFHNLKFLKL 1031
L +L + +AKSL LS + + S+VP +N PS F NLK+LKL
Sbjct: 302 CLDLLKMLHQFCSAKSLTLSMNIIEVLSKVPAALNKHPSPFSNLKYLKL 350
>ref|XP_002331319.1| f-box family protein [Populus trichocarpa]
gi|222873902|gb|EEF11033.1| f-box family protein [Populus
trichocarpa]
Length = 453
Score = 95.9 bits (237), Expect = 3e-17
Identities = 99/348 (28%), Positives = 156/348 (44%), Gaps = 30/348 (8%)
Frame = +3
Query: 78 SDEDIISSLPEQILHHILSYLDMKEVLLTSLLSTKWRNVWRSVPNLIFSESFWKDPVRKV 257
++ED IS+LP +LHHILS++D +V+ T +LS +W NVW+S P L F+ + +
Sbjct: 32 NNEDRISTLPNVLLHHILSFVDAVQVVQTCVLSKRWMNVWKSHPYLDFNFETFSSLINSD 91
Query: 258 LV---LSKFIYFVDTVLLLRGGSNINKLSITSSKYNNLNQIQRLITYAVMRNAKEIHM-- 422
++ F F+ VL+ R K+S+ + + ++ LI YAV + +EI +
Sbjct: 92 YYDDEVNNFTDFIYHVLVRRHNLKAVKISLDILRDTRCSLVESLIYYAVKHHVEEISVNT 151
Query: 423 ----VGLDIYRAKPDLLSL------------------LARVNTLHLVSVRISSFDTQEWL 536
+ + + R D SL L + TLHL R +FD + +
Sbjct: 152 AHWDMPIVLPRCFFDCESLRSLKLKVDGGIALPKSLGLQSLKTLHLGGAR--NFDGK--I 207
Query: 537 HLKSQSLENLIIED--CRGFRCLGIYTPQLKYLKVENSREEYNPSGL-IEIDAPKLTSLV 707
+LENL IED I+ LK L++ N R G + + APKLTS
Sbjct: 208 FSTCPNLENLKIEDIYLNTIENFNIHALNLKSLEILNWRYGRIMRGCKVMLFAPKLTSFK 267
Query: 708 WKGYMYKDYIFSSPSSLVTVEVDTKINSVDEHEHLNTXXXXXXXXXXXXXAIPSPDVVFG 887
+ G +F S +L +++ + +H H + G
Sbjct: 268 FYG---NTPLFWSEVNLTSLDDVNVVLQRYQHSH---NYPFYVVEDEYISEEDETEQGLG 321
Query: 888 KCLRNILKELTNAKSLILSAHGFQTFSEVPDEINSLPSSFHNLKFLKL 1031
L +L + +AKSL LS + + SEVP ++ PS F NLK+LKL
Sbjct: 322 LNLIKMLHQFCSAKSLTLSMNIIEILSEVPAALDKHPSPFSNLKYLKL 369