BLASTX nr result

ID: Coptis25_contig00004764 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00004764
         (552 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002327217.1| predicted protein [Populus trichocarpa] gi|2...   264   6e-69
ref|XP_002326013.1| predicted protein [Populus trichocarpa] gi|2...   258   6e-67
emb|CBI27914.3| unnamed protein product [Vitis vinifera]              253   1e-65
ref|XP_002282186.1| PREDICTED: angio-associated migratory cell p...   253   1e-65
ref|XP_002274841.1| PREDICTED: angio-associated migratory cell p...   253   1e-65

>ref|XP_002327217.1| predicted protein [Populus trichocarpa] gi|222835587|gb|EEE74022.1|
           predicted protein [Populus trichocarpa]
          Length = 378

 Score =  264 bits (675), Expect = 6e-69
 Identities = 121/183 (66%), Positives = 146/183 (79%)
 Frame = -1

Query: 552 GPSDGVEWVRWHPRGNLVLAGSEDSTVWLWNADKASHLNIFFGHEGSVTCGDFTPDGKTI 373
           GP +G+EWVRWHP+G+LVLAGSED TVW+WNADK ++LN F GHE SVTCGDFTPDGKTI
Sbjct: 131 GPDEGIEWVRWHPKGHLVLAGSEDKTVWMWNADKGAYLNSFAGHEASVTCGDFTPDGKTI 190

Query: 372 CTASNDTSLMIWNPKTGSKIHVVKGYPYHTKAITCLTISYDSNLAITGSEDSSVHIVHIA 193
           CT S+D SL IWNPK+G  IHVV+G+PYHT  +TCL +S DS LAITGS+D+SVHIV+I 
Sbjct: 191 CTGSDDASLRIWNPKSGENIHVVRGHPYHTDGLTCLALSSDSTLAITGSKDNSVHIVNIT 250

Query: 192 TGKVISSLLSHSDSVECVGLSPRYWQSVAMPGIPFSIPLLATGSLDENLIIWDMQNSVAR 13
           TG+V+SSL+SHSDSVECVGL+P             S P  ATG LD+ LIIWD+Q+S+ R
Sbjct: 251 TGRVVSSLVSHSDSVECVGLAP-------------SSPWAATGGLDQKLIIWDLQHSLPR 297

Query: 12  FTC 4
            +C
Sbjct: 298 ASC 300


>ref|XP_002326013.1| predicted protein [Populus trichocarpa] gi|222862888|gb|EEF00395.1|
           predicted protein [Populus trichocarpa]
          Length = 390

 Score =  258 bits (658), Expect = 6e-67
 Identities = 118/183 (64%), Positives = 144/183 (78%)
 Frame = -1

Query: 552 GPSDGVEWVRWHPRGNLVLAGSEDSTVWLWNADKASHLNIFFGHEGSVTCGDFTPDGKTI 373
           GP +G+EWVRWHP+G+LVLAGSED +VW+WNAD+ ++LN F GHE SVTCGDFTPDGKTI
Sbjct: 143 GPDEGIEWVRWHPKGHLVLAGSEDKSVWMWNADRGAYLNSFTGHEASVTCGDFTPDGKTI 202

Query: 372 CTASNDTSLMIWNPKTGSKIHVVKGYPYHTKAITCLTISYDSNLAITGSEDSSVHIVHIA 193
           CT S+D SL IWNPK+G  IHVV+G+PYHT  +TCL +S DS LAITGS+D+SVHIV+I 
Sbjct: 203 CTGSDDASLRIWNPKSGENIHVVRGHPYHTDGLTCLALSSDSTLAITGSKDNSVHIVNIT 262

Query: 192 TGKVISSLLSHSDSVECVGLSPRYWQSVAMPGIPFSIPLLATGSLDENLIIWDMQNSVAR 13
           +G+V+SSL SHSDSVECV L+P             S P  ATG LD+ LIIWD+Q+S+ R
Sbjct: 263 SGRVVSSLASHSDSVECVELAP-------------SSPWAATGGLDQKLIIWDLQHSLPR 309

Query: 12  FTC 4
            TC
Sbjct: 310 ATC 312


>emb|CBI27914.3| unnamed protein product [Vitis vinifera]
          Length = 393

 Score =  253 bits (646), Expect = 1e-65
 Identities = 114/183 (62%), Positives = 141/183 (77%)
 Frame = -1

Query: 552 GPSDGVEWVRWHPRGNLVLAGSEDSTVWLWNADKASHLNIFFGHEGSVTCGDFTPDGKTI 373
           GP  G+EWVRWHPRG++VLAGSED TVW+WNAD+ ++LN+F GH  SVTCGDFTPDGKTI
Sbjct: 146 GPGGGIEWVRWHPRGHVVLAGSEDCTVWMWNADRGAYLNMFSGHASSVTCGDFTPDGKTI 205

Query: 372 CTASNDTSLMIWNPKTGSKIHVVKGYPYHTKAITCLTISYDSNLAITGSEDSSVHIVHIA 193
           CT S+D +L IWNP +G  IHVV+G+PYHT+ +TCL I+ DS LA+TGS+DSSVH+V+I 
Sbjct: 206 CTGSDDATLRIWNPSSGENIHVVRGHPYHTEGLTCLAITSDSTLALTGSKDSSVHVVNIT 265

Query: 192 TGKVISSLLSHSDSVECVGLSPRYWQSVAMPGIPFSIPLLATGSLDENLIIWDMQNSVAR 13
           TGKV+SSL SH+DS+EC+GLS              S P  ATGS+D  LI WD+Q+S  R
Sbjct: 266 TGKVVSSLTSHTDSIECIGLS-------------LSPPWAATGSMDNKLIFWDLQHSSPR 312

Query: 12  FTC 4
            TC
Sbjct: 313 CTC 315


>ref|XP_002282186.1| PREDICTED: angio-associated migratory cell protein-like [Vitis
           vinifera]
          Length = 391

 Score =  253 bits (646), Expect = 1e-65
 Identities = 114/183 (62%), Positives = 141/183 (77%)
 Frame = -1

Query: 552 GPSDGVEWVRWHPRGNLVLAGSEDSTVWLWNADKASHLNIFFGHEGSVTCGDFTPDGKTI 373
           GP  G+EWVRWHPRG++VLAGSED TVW+WNAD+ ++LN+F GH  SVTCGDFTPDGKTI
Sbjct: 144 GPGGGIEWVRWHPRGHVVLAGSEDCTVWMWNADRGAYLNMFSGHASSVTCGDFTPDGKTI 203

Query: 372 CTASNDTSLMIWNPKTGSKIHVVKGYPYHTKAITCLTISYDSNLAITGSEDSSVHIVHIA 193
           CT S+D +L IWNP +G  IHVV+G+PYHT+ +TCL I+ DS LA+TGS+DSSVH+V+I 
Sbjct: 204 CTGSDDATLRIWNPSSGENIHVVRGHPYHTEGLTCLAITSDSTLALTGSKDSSVHVVNIT 263

Query: 192 TGKVISSLLSHSDSVECVGLSPRYWQSVAMPGIPFSIPLLATGSLDENLIIWDMQNSVAR 13
           TGKV+SSL SH+DS+EC+GLS              S P  ATGS+D  LI WD+Q+S  R
Sbjct: 264 TGKVVSSLTSHTDSIECIGLS-------------LSPPWAATGSMDNKLIFWDLQHSSPR 310

Query: 12  FTC 4
            TC
Sbjct: 311 CTC 313


>ref|XP_002274841.1| PREDICTED: angio-associated migratory cell protein [Vitis vinifera]
           gi|296088039|emb|CBI35322.3| unnamed protein product
           [Vitis vinifera]
          Length = 391

 Score =  253 bits (646), Expect = 1e-65
 Identities = 113/183 (61%), Positives = 143/183 (78%)
 Frame = -1

Query: 552 GPSDGVEWVRWHPRGNLVLAGSEDSTVWLWNADKASHLNIFFGHEGSVTCGDFTPDGKTI 373
           GP  G+EWVRWHPRG+LVLAGSED TVW+WNAD++++LN+F GH  SVTCG+FTPDGKTI
Sbjct: 144 GPGGGIEWVRWHPRGHLVLAGSEDCTVWMWNADRSAYLNMFSGHASSVTCGNFTPDGKTI 203

Query: 372 CTASNDTSLMIWNPKTGSKIHVVKGYPYHTKAITCLTISYDSNLAITGSEDSSVHIVHIA 193
           CT S+D +L IWNP++G   HVV+G+PYHT+ +TCL I+ DS LA+TGS+DSSVHIV+IA
Sbjct: 204 CTGSDDATLRIWNPRSGENTHVVRGHPYHTEGLTCLAITSDSTLALTGSKDSSVHIVNIA 263

Query: 192 TGKVISSLLSHSDSVECVGLSPRYWQSVAMPGIPFSIPLLATGSLDENLIIWDMQNSVAR 13
           TGKV+SSL SH+DS+EC+GLS              S P  ATG +D  L++WD+Q+S  R
Sbjct: 264 TGKVVSSLTSHTDSIECIGLS-------------LSSPWAATGGMDNKLVVWDLQHSSPR 310

Query: 12  FTC 4
            TC
Sbjct: 311 CTC 313


Top