BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00004753
         (977 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...    74   4e-11
ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]...    72   2e-10
ref|XP_003625428.1| RNA polymerase-associated protein RTF1-like ...    71   5e-10
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...    70   6e-10
ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]...    70   6e-10

>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
           gi|223541691|gb|EEF43239.1| RNA polymerase-associated
           protein RTF1, putative [Ricinus communis]
          Length = 660

 Score = 74.3 bits (181), Expect = 4e-11
 Identities = 34/58 (58%), Positives = 45/58 (77%)
 Frame = +3

Query: 528 KGKNLKAVRLVEIDKKNKAENFTNASEKEPINKCFKAAENGYDPFSRRCKKSINQFVS 701
           +GK+ KA+RL E+++KN+AENF NASE +P+N   KA E GYDPFSRR  +S N +VS
Sbjct: 470 QGKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVS 527


>ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]
           gi|222859693|gb|EEE97240.1| PAF1 complex component
           [Populus trichocarpa]
          Length = 664

 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 35/59 (59%), Positives = 44/59 (74%)
 Frame = +3

Query: 528 KGKNLKAVRLVEIDKKNKAENFTNASEKEPINKCFKAAENGYDPFSRRCKKSINQFVSN 704
           K K+ KA+RL E+++KN+ ENF NASE +PIN   KA E GYDPFSRR  +S N +VSN
Sbjct: 473 KVKDAKALRLAEMNRKNRVENFRNASELKPINTGLKAGEAGYDPFSRRWTRSRNYYVSN 531


>ref|XP_003625428.1| RNA polymerase-associated protein RTF1-like protein [Medicago
           truncatula] gi|355500443|gb|AES81646.1| RNA
           polymerase-associated protein RTF1-like protein
           [Medicago truncatula]
          Length = 624

 Score = 70.9 bits (172), Expect = 5e-10
 Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 4/105 (3%)
 Frame = +3

Query: 534 KNLKAVRLVEIDKKNKAENFTNASEKEPINKCFKAAENGYDPFSRRCKKSINQFVSNLFT 713
           K+ KA+RL E+++KN+ ENF NAS+ +P+NK  KA E GYDPFSRR  +S N + S    
Sbjct: 444 KDAKALRLSEMNRKNRVENFKNASDLKPVNKALKAGEAGYDPFSRRWTRSRNYYNSKPAE 503

Query: 714 EASKNCHFAARSL----ESYEGNGAAGTTNVKQPIGCKQQMTNTR 836
           EA+   + +  ++     +  G G A TT   +      ++ +TR
Sbjct: 504 EATAGNNTSGGAVGDGGSNGIGAGMAATTEALEAAAGAGKLVDTR 548


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
           max]
          Length = 656

 Score = 70.5 bits (171), Expect = 6e-10
 Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
 Frame = +3

Query: 528 KGKNLKAVRLVEIDKKNKAENFTNASEKEPINKCFKAAENGYDPFSRRCKKSINQFVSNL 707
           K K+ KA++L E+++KN+ ENF NASE +P+N   KA E GYDPFSRR  +S N +    
Sbjct: 468 KQKDAKALKLAEMNRKNRFENFKNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYY---- 523

Query: 708 FTEASKNCHFAARSLESYEGNGA-AGTTNVKQPIGCKQQMTNT 833
              A+K    AA    S  GN A AG+     P+  +  M  T
Sbjct: 524 ---AAKPGEKAAAGNNSVNGNVAGAGSNGTGAPVTAEAGMVAT 563


>ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]
           gi|222848649|gb|EEE86196.1| PAF1 complex component
           [Populus trichocarpa]
          Length = 662

 Score = 70.5 bits (171), Expect = 6e-10
 Identities = 33/58 (56%), Positives = 43/58 (74%)
 Frame = +3

Query: 528 KGKNLKAVRLVEIDKKNKAENFTNASEKEPINKCFKAAENGYDPFSRRCKKSINQFVS 701
           K K+ KA+RL E+++KN+ ENF NASE +P+N   KA E GYDPFSRR  +S N +VS
Sbjct: 471 KVKDAKAIRLAEMNRKNRVENFRNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYVS 528