BLASTX nr result
ID: Coptis25_contig00004648
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00004648
(1944 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002514298.1| short-chain dehydrogenase, putative [Ricinus... 718 0.0
ref|XP_002280953.1| PREDICTED: probable chlorophyll(ide) b reduc... 708 0.0
ref|XP_003528914.1| PREDICTED: probable chlorophyll(ide) b reduc... 708 0.0
ref|XP_002324420.1| predicted protein [Populus trichocarpa] gi|2... 704 0.0
ref|XP_003534200.1| PREDICTED: probable chlorophyll(ide) b reduc... 702 0.0
>ref|XP_002514298.1| short-chain dehydrogenase, putative [Ricinus communis]
gi|223546754|gb|EEF48252.1| short-chain dehydrogenase,
putative [Ricinus communis]
Length = 517
Score = 718 bits (1853), Expect = 0.0
Identities = 383/524 (73%), Positives = 420/524 (80%), Gaps = 10/524 (1%)
Frame = +2
Query: 2 ATLTELHFSLKSLDSSSRTNKKHRLRNFSLGNYEILVFRQQNCGRGLSLRACRSFKCEDX 181
AT+T+LH +SLD S + ++ RN LG G G CRSF+ ED
Sbjct: 3 ATVTKLHIYPQSLDYFSFSKQQ---RNRLLGP------GLSWTGFGGCAVKCRSFRSEDG 53
Query: 182 XXXXXXXXXXXXXXXXXXXXALYSLKT-----FLLKVSG-----TTPPGKEEYKNAVAKA 331
LK +LK + + KEEY AVAK
Sbjct: 54 REVEVEVEEKVKECQRKLKKNKIELKKEDGFWSILKDANFGFGRSDSHSKEEYAKAVAKL 113
Query: 332 EELFFSCATQVGRYLVTMMSTGVILATGFQLSGGDSQLDTLIWYSWLGGIIIGTMIGSNM 511
EE F S A Q+GRY+VTMMSTGVILA GFQLSGGDSQ++TLIWYSWLGGIIIGTMIG+NM
Sbjct: 114 EEAFSSIALQIGRYIVTMMSTGVILAVGFQLSGGDSQMNTLIWYSWLGGIIIGTMIGANM 173
Query: 512 VLEDHYKAGPRNIVITGSTRGLGKALAREFLLSGDRVIVASRSSESVQSTVGELEENLKE 691
VL++H +AGPRN+VITGSTRGLGKALAREFLLSGDRV+VASRS ESV +TV ELEENLKE
Sbjct: 174 VLDEHCRAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSPESVDTTVRELEENLKE 233
Query: 692 GIRSASPTSGANMAHAKVFGIACDVCKPEDVERLANFAVKELGSIDIWINNAGTNKGFRP 871
G+ + S TS N+AHAKV GIAC+VC+P DV++LANFAVKE GSIDIWINNAGTNKGFRP
Sbjct: 234 GMVTTSGTSRTNLAHAKVVGIACNVCEPSDVQKLANFAVKEFGSIDIWINNAGTNKGFRP 293
Query: 872 LLQFADEDIEQIVSTNLVGSLLCTREAMRVMRSQEKGGHIFNMDGAGSGGSSTPLTAVYG 1051
LLQF+DEDI QIVSTNLVGS+LCTREAMRV+ +Q KGGHIFNMDGAGSGGSSTPLTAVYG
Sbjct: 294 LLQFSDEDINQIVSTNLVGSILCTREAMRVIMNQPKGGHIFNMDGAGSGGSSTPLTAVYG 353
Query: 1052 STKCGLRQLQASLLTECKRSKVGVHTASPGMVLTDLLLSGSTLKNKQMFNIICELPETVA 1231
STKCGLRQLQASL ECKRSKVGVHTASPGMVLTDLLLSGSTLKNKQMFNIICELPETVA
Sbjct: 354 STKCGLRQLQASLFKECKRSKVGVHTASPGMVLTDLLLSGSTLKNKQMFNIICELPETVA 413
Query: 1232 RTLAPRMRVVKGSGKAINYLTPPRILLALVTAWVRRGRWFDDQGRALYAAEADRIRNWAE 1411
RTL PRMRVVKGSGKAINYLTPPRILLALVTAW+R+GRWFDDQGRALYAAEADR+RNWAE
Sbjct: 414 RTLVPRMRVVKGSGKAINYLTPPRILLALVTAWLRQGRWFDDQGRALYAAEADRLRNWAE 473
Query: 1412 SRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSATVTSPGT 1543
+RARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSS + PGT
Sbjct: 474 NRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTSNPFPGT 517
>ref|XP_002280953.1| PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic
[Vitis vinifera] gi|297738824|emb|CBI28069.3| unnamed
protein product [Vitis vinifera]
Length = 517
Score = 708 bits (1828), Expect = 0.0
Identities = 370/523 (70%), Positives = 418/523 (79%), Gaps = 9/523 (1%)
Frame = +2
Query: 2 ATLTELHFSLKSLDSSSRTNKKHRLRNFSLGNYEILVFRQQNCGRGLSLRACRSFKCEDX 181
A +T+L S SL + HR + L + + FR + RG+ L CRSF+ D
Sbjct: 2 AAVTKLQISPYSLHPRTH----HRAARWPLRRPQFVSFRGR---RGVYLLPCRSFRSGDG 54
Query: 182 XXXXXXXXXXXXXXXXXXXXA---------LYSLKTFLLKVSGTTPPGKEEYKNAVAKAE 334
L K+ ++VSG+ P +EE++ AVAK E
Sbjct: 55 GELEEQEKESVRKGGNLKENRVEGKEGSGILSFAKSVFVRVSGSFPRTEEEHRIAVAKLE 114
Query: 335 ELFFSCATQVGRYLVTMMSTGVILATGFQLSGGDSQLDTLIWYSWLGGIIIGTMIGSNMV 514
E+F S A Q+GRY+VTMMSTGVILA GFQLSGGDSQ++ LIWYSWLGGIIIGTMIG+N+V
Sbjct: 115 EIFSSIAVQIGRYIVTMMSTGVILAIGFQLSGGDSQMNALIWYSWLGGIIIGTMIGANLV 174
Query: 515 LEDHYKAGPRNIVITGSTRGLGKALAREFLLSGDRVIVASRSSESVQSTVGELEENLKEG 694
LE+H +AGPRN+VITGSTRGLGKALAREFLLSGDRV+VASRS ESV +TV ELEENLKEG
Sbjct: 175 LEEHCRAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSPESVHATVRELEENLKEG 234
Query: 695 IRSASPTSGANMAHAKVFGIACDVCKPEDVERLANFAVKELGSIDIWINNAGTNKGFRPL 874
+ +A S N+ AKV GIACDVC+P+DV++LANFAV E GSI+IWINNAGTNKGFRPL
Sbjct: 235 MVTAGGPSKTNLERAKVVGIACDVCEPDDVQKLANFAVSEFGSINIWINNAGTNKGFRPL 294
Query: 875 LQFADEDIEQIVSTNLVGSLLCTREAMRVMRSQEKGGHIFNMDGAGSGGSSTPLTAVYGS 1054
LQF DEDI+QIVSTNLVGSLLCT+EA+RVMRSQ GGHIFNMDGAGSGGSSTPLTAVYGS
Sbjct: 295 LQFTDEDIKQIVSTNLVGSLLCTQEAIRVMRSQGNGGHIFNMDGAGSGGSSTPLTAVYGS 354
Query: 1055 TKCGLRQLQASLLTECKRSKVGVHTASPGMVLTDLLLSGSTLKNKQMFNIICELPETVAR 1234
TKCGLRQLQ SLL ECKRS VGVHTASPGMVLTDLLLSGST++NKQMFNIICELPETVAR
Sbjct: 355 TKCGLRQLQGSLLKECKRSNVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 414
Query: 1235 TLAPRMRVVKGSGKAINYLTPPRILLALVTAWVRRGRWFDDQGRALYAAEADRIRNWAES 1414
TL PRMRVVKG+GKAINYLTPPRILLAL+T W+R+GRWFD+QGRALYAAEADRIRNWAE+
Sbjct: 415 TLVPRMRVVKGTGKAINYLTPPRILLALITVWLRQGRWFDEQGRALYAAEADRIRNWAEN 474
Query: 1415 RARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSATVTSPGT 1543
R RFSFTDAMEMYTENTWVSVFSLSVVCAFIILSS + PGT
Sbjct: 475 RTRFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGSSFPGT 517
>ref|XP_003528914.1| PREDICTED: probable chlorophyll(ide) b reductase NYC1,
chloroplastic-like [Glycine max]
Length = 514
Score = 708 bits (1827), Expect = 0.0
Identities = 362/475 (76%), Positives = 399/475 (84%), Gaps = 3/475 (0%)
Frame = +2
Query: 128 CGRGLSLRACRSFKCEDXXXXXXXXXXXXXXXXXXXXXAL---YSLKTFLLKVSGTTPPG 298
C R S++ CR+F+ ED SLK+ LL+
Sbjct: 41 CDR-FSVKVCRAFRTEDGGDVKEKKLRNLKKNEEKTKRESGFWSSLKSILLRNFMVGSKS 99
Query: 299 KEEYKNAVAKAEELFFSCATQVGRYLVTMMSTGVILATGFQLSGGDSQLDTLIWYSWLGG 478
+EY+ AVAK E L S A Q+GRY+VTMMSTGVIL+ GFQ+SGGDSQ+D LIWYSWLGG
Sbjct: 100 DDEYRQAVAKVEGLLSSIAIQIGRYIVTMMSTGVILSIGFQMSGGDSQMDALIWYSWLGG 159
Query: 479 IIIGTMIGSNMVLEDHYKAGPRNIVITGSTRGLGKALAREFLLSGDRVIVASRSSESVQS 658
+IIGTMIG+NMVLE+H +AGPRN+VITGSTRGLGKALAREFLLSGDRVIV SRS ESVQ+
Sbjct: 160 VIIGTMIGANMVLEEHCRAGPRNVVITGSTRGLGKALAREFLLSGDRVIVTSRSPESVQA 219
Query: 659 TVGELEENLKEGIRSASPTSGANMAHAKVFGIACDVCKPEDVERLANFAVKELGSIDIWI 838
T+ ELEENLKEGI +A +S ++HAKV GIACDVC+P DV+RLANFAVKELG IDIWI
Sbjct: 220 TIKELEENLKEGIANAVGSSLTKLSHAKVVGIACDVCEPHDVQRLANFAVKELGHIDIWI 279
Query: 839 NNAGTNKGFRPLLQFADEDIEQIVSTNLVGSLLCTREAMRVMRSQEKGGHIFNMDGAGSG 1018
NNAGTNKGFRPLLQF+DEDI+QIVSTNLVGS+LCTREAMRVMR+Q GHIFNMDGAGSG
Sbjct: 280 NNAGTNKGFRPLLQFSDEDIKQIVSTNLVGSILCTREAMRVMRNQAIAGHIFNMDGAGSG 339
Query: 1019 GSSTPLTAVYGSTKCGLRQLQASLLTECKRSKVGVHTASPGMVLTDLLLSGSTLKNKQMF 1198
GSSTPLTAVYGSTKCGLRQLQ SLL ECKRSKVGVHTASPGMVLTDLLLSGST++N+QMF
Sbjct: 340 GSSTPLTAVYGSTKCGLRQLQGSLLKECKRSKVGVHTASPGMVLTDLLLSGSTVQNRQMF 399
Query: 1199 NIICELPETVARTLAPRMRVVKGSGKAINYLTPPRILLALVTAWVRRGRWFDDQGRALYA 1378
NIICELPETVARTL PRMRVVKG+GKAINYLTPPRILLALVTAW+RRGRWFDDQGRALYA
Sbjct: 400 NIICELPETVARTLVPRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYA 459
Query: 1379 AEADRIRNWAESRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSATVTSPGT 1543
AEADR+RNWAE RARFSFTDAMEMYTENTW+SVFSLSVVCAFIILSS PGT
Sbjct: 460 AEADRLRNWAEDRARFSFTDAMEMYTENTWLSVFSLSVVCAFIILSSTGSNLPGT 514
>ref|XP_002324420.1| predicted protein [Populus trichocarpa] gi|222865854|gb|EEF02985.1|
predicted protein [Populus trichocarpa]
Length = 436
Score = 704 bits (1818), Expect = 0.0
Identities = 351/422 (83%), Positives = 388/422 (91%), Gaps = 1/422 (0%)
Frame = +2
Query: 281 GTTPP-GKEEYKNAVAKAEELFFSCATQVGRYLVTMMSTGVILATGFQLSGGDSQLDTLI 457
GT P EE++ AVA+ EE+F S A Q+GRY+VTMMSTGV+LA GFQLSGGDSQ++TLI
Sbjct: 17 GTLPSQSNEEHREAVARLEEVFSSAALQIGRYIVTMMSTGVVLAVGFQLSGGDSQMNTLI 76
Query: 458 WYSWLGGIIIGTMIGSNMVLEDHYKAGPRNIVITGSTRGLGKALAREFLLSGDRVIVASR 637
WYSWLGGIIIGTMIG+NMVL++H +AGPRN+VITGSTRGLGKALAREFLLSGD V+VASR
Sbjct: 77 WYSWLGGIIIGTMIGANMVLDEHCRAGPRNVVITGSTRGLGKALAREFLLSGDHVVVASR 136
Query: 638 SSESVQSTVGELEENLKEGIRSASPTSGANMAHAKVFGIACDVCKPEDVERLANFAVKEL 817
S ESV +T+ ELEENLKEG+ +AS + ++AHAKV GIACDVC+P DV++LANFAV E
Sbjct: 137 SPESVDTTIRELEENLKEGMITAS--NRTSLAHAKVVGIACDVCEPSDVQKLANFAVNEF 194
Query: 818 GSIDIWINNAGTNKGFRPLLQFADEDIEQIVSTNLVGSLLCTREAMRVMRSQEKGGHIFN 997
GSIDIWINNAGTNKGFRPLLQF DEDI+QIVSTNLVGS+LCT+EAMR+M +Q KGGHIFN
Sbjct: 195 GSIDIWINNAGTNKGFRPLLQFTDEDIKQIVSTNLVGSILCTQEAMRMMMNQPKGGHIFN 254
Query: 998 MDGAGSGGSSTPLTAVYGSTKCGLRQLQASLLTECKRSKVGVHTASPGMVLTDLLLSGST 1177
MDGAGSGGSSTPLTAVYGSTKCGLRQLQASLL ECKRSKVG+HTASPGMVLTDLLLSGST
Sbjct: 255 MDGAGSGGSSTPLTAVYGSTKCGLRQLQASLLKECKRSKVGIHTASPGMVLTDLLLSGST 314
Query: 1178 LKNKQMFNIICELPETVARTLAPRMRVVKGSGKAINYLTPPRILLALVTAWVRRGRWFDD 1357
LKNKQMFNIICELPETVARTL PRMRVVKG+GKAI+YLTPPRILLALVTAW+RRGRWFDD
Sbjct: 315 LKNKQMFNIICELPETVARTLVPRMRVVKGTGKAISYLTPPRILLALVTAWLRRGRWFDD 374
Query: 1358 QGRALYAAEADRIRNWAESRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSATVTSP 1537
QGRALYAAEADR+RNWAE+RA+FSFTDAMEMYTENTWVSVFSLSVVCAFIILSS T P
Sbjct: 375 QGRALYAAEADRLRNWAENRAQFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGSTFP 434
Query: 1538 GT 1543
GT
Sbjct: 435 GT 436
>ref|XP_003534200.1| PREDICTED: probable chlorophyll(ide) b reductase NYC1,
chloroplastic-like [Glycine max]
Length = 515
Score = 702 bits (1812), Expect = 0.0
Identities = 366/520 (70%), Positives = 415/520 (79%), Gaps = 6/520 (1%)
Frame = +2
Query: 2 ATLTELHFSLKSLDSSSRTNKKHRLRNFSLGNYE---ILVFRQQNCGRGLSLRACRSFKC 172
AT+ +LH +SL+ K RL G+ +L F +N + S++ CR+F+
Sbjct: 2 ATVVKLHVFPESLNQH-----KTRLLRRGFGSCPSPGVLGFGHKNYDQ-FSVKVCRAFRT 55
Query: 173 EDXXXXXXXXXXXXXXXXXXXXXAL---YSLKTFLLKVSGTTPPGKEEYKNAVAKAEELF 343
ED SLK+ LL+ +EY+ AV K E L
Sbjct: 56 EDGGDVKEKKFRNLKKNEEKTKRESGFWSSLKSILLRNFMVGSKSDDEYRQAVVKVEGLL 115
Query: 344 FSCATQVGRYLVTMMSTGVILATGFQLSGGDSQLDTLIWYSWLGGIIIGTMIGSNMVLED 523
S A Q+GRY+VTMMSTGVIL+ GFQ+SGGDSQ+D LIWYSWLGG+IIGTMIG+NMVLE+
Sbjct: 116 SSIAIQIGRYIVTMMSTGVILSIGFQMSGGDSQMDALIWYSWLGGVIIGTMIGANMVLEE 175
Query: 524 HYKAGPRNIVITGSTRGLGKALAREFLLSGDRVIVASRSSESVQSTVGELEENLKEGIRS 703
H +AGPRN+VITGSTRGLGKALAREFLLSGDRVIV SRS ESVQ T+ ELEENLKEGI +
Sbjct: 176 HCRAGPRNVVITGSTRGLGKALAREFLLSGDRVIVTSRSPESVQDTIKELEENLKEGIAN 235
Query: 704 ASPTSGANMAHAKVFGIACDVCKPEDVERLANFAVKELGSIDIWINNAGTNKGFRPLLQF 883
A +S ++ AKV GI+CDVC+P DV+RLANFAVKELG IDIWINNAGTNKGFRPLLQF
Sbjct: 236 AVGSSLTKLSQAKVIGISCDVCEPHDVQRLANFAVKELGHIDIWINNAGTNKGFRPLLQF 295
Query: 884 ADEDIEQIVSTNLVGSLLCTREAMRVMRSQEKGGHIFNMDGAGSGGSSTPLTAVYGSTKC 1063
+DEDI+QIVSTNLVGS+LCTREA+R+MR+Q GHIFNMDGAGSGGSSTPLTAVYGSTKC
Sbjct: 296 SDEDIKQIVSTNLVGSILCTREAVRIMRNQANAGHIFNMDGAGSGGSSTPLTAVYGSTKC 355
Query: 1064 GLRQLQASLLTECKRSKVGVHTASPGMVLTDLLLSGSTLKNKQMFNIICELPETVARTLA 1243
GLRQLQ SLL ECKRSKVGVHTASPGMVLTDLLLSGST++N+QMFNIICELPETVARTL
Sbjct: 356 GLRQLQGSLLKECKRSKVGVHTASPGMVLTDLLLSGSTVQNRQMFNIICELPETVARTLV 415
Query: 1244 PRMRVVKGSGKAINYLTPPRILLALVTAWVRRGRWFDDQGRALYAAEADRIRNWAESRAR 1423
PRMRVVKG+GKAINYLTPPRILLAL+TAW+R+GRWFDDQGRALYAAEADR+RNWAE RAR
Sbjct: 416 PRMRVVKGTGKAINYLTPPRILLALITAWLRQGRWFDDQGRALYAAEADRLRNWAEDRAR 475
Query: 1424 FSFTDAMEMYTENTWVSVFSLSVVCAFIILSSATVTSPGT 1543
FSFTDAMEMYTENTW+SVFSLSVVCAFIILSS PGT
Sbjct: 476 FSFTDAMEMYTENTWLSVFSLSVVCAFIILSSTGSNLPGT 515