BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00004605
         (1150 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28799.3| unnamed protein product [Vitis vinifera]              419   e-115
emb|CAN79186.1| hypothetical protein VITISV_035853 [Vitis vinifera]   417   e-114
ref|XP_002524188.1| 3'-5' exonuclease, putative [Ricinus communi...   398   e-108
ref|XP_002268685.1| PREDICTED: uncharacterized protein LOC100261...   396   e-108
ref|XP_003605934.1| Exosome complex exonuclease RRP6 [Medicago t...   387   e-105

>emb|CBI28799.3| unnamed protein product [Vitis vinifera]
          Length = 935

 Score =  419 bits (1077), Expect = e-115
 Identities = 211/383 (55%), Positives = 262/383 (68%), Gaps = 1/383 (0%)
 Frame = -3

Query: 1148 SCKSPVYHNCRIYASDGRLLCYCDRRKLDWYLSRDLAKLVENDPPGIMLLFEPKGRPEDE 969
            SCKSPVYHNCRI+ASDGRLLCYCDRRKL+WY+ R LAKLV+++P  IMLLFEPKGRPEDE
Sbjct: 505  SCKSPVYHNCRIFASDGRLLCYCDRRKLEWYVRRGLAKLVDDNPLAIMLLFEPKGRPEDE 564

Query: 968  DNDFYIQSKKNICVGCGERNHYLRYRIVPSCYRMHFPEHLKSHRSHDIVLLCVDCHEVAH 789
            DNDFY+QSKKNICVGCGERNHYLRYRI+PSCYRMHFPEHLKSHRSHDIVLLCVDCHEVAH
Sbjct: 565  DNDFYVQSKKNICVGCGERNHYLRYRIIPSCYRMHFPEHLKSHRSHDIVLLCVDCHEVAH 624

Query: 788  SVAEKHKRQIAAEFGIPLFVKKVTESSQTDIIDXXXXXXXXXXXXXXSPXXXXXXXXXXX 609
            S AEK+K++IAAEFGIPLFV+KV +S +  +                SP           
Sbjct: 625  SAAEKYKKKIAAEFGIPLFVQKVVDSREAQVASQLSTSEVNTVEAGVSPLQLRTAAMALL 684

Query: 608  RHGPNMPAKRREELTLTVMKYFGGRKISTDDLKSALLVGMSPHQRRKHEKKRGLPFKHST 429
            RHGP MP+KR EEL  TVMKY+GGR+I+ +DL+ ALLVGMSPH+R++ E+K+G+  KHS 
Sbjct: 685  RHGPRMPSKRCEELRQTVMKYYGGREITEEDLEKALLVGMSPHERKRLERKKGMSLKHSK 744

Query: 428  RGHLSNEANYNNADSIRPYTLTEAIKWDYKNGLETATEANLGVDMDASTRDIHKGCDSKV 249
                 N+   +NA S+    +  A+K D + GL T      G            G D ++
Sbjct: 745  GAGFPNKEQESNARSMGTSPIDNALKVDGEGGLNTTKGEACGKQ--------ENGNDLEI 796

Query: 248  KGDAATTDGEDLNFNIASLLN-KGKATDTGEDLEDKSLSDFTYNSSQCKPSGTVSSTYNQ 72
              +   +D  +L+ + +     K       ++ E +S S+ T +    K +G  S  +N 
Sbjct: 797  TMEVLASDSNNLSSDRSETSEMKDMCVMDTDNCESRSQSEGTLDLFYPKSNGNASPKHNP 856

Query: 71   KMSLLGHGPHGKQVVDHLLKKYG 3
            K+SLLGHGPHGK+VVDHLLK+YG
Sbjct: 857  KLSLLGHGPHGKEVVDHLLKEYG 879


>emb|CAN79186.1| hypothetical protein VITISV_035853 [Vitis vinifera]
          Length = 951

 Score =  417 bits (1072), Expect = e-114
 Identities = 210/383 (54%), Positives = 261/383 (68%), Gaps = 1/383 (0%)
 Frame = -3

Query: 1148 SCKSPVYHNCRIYASDGRLLCYCDRRKLDWYLSRDLAKLVENDPPGIMLLFEPKGRPEDE 969
            SCKSPVYHNCRI+ASDG+LLCYCDRRKL+WY+ R LAKLV+++P  IMLLFEPKGRPEDE
Sbjct: 476  SCKSPVYHNCRIFASDGQLLCYCDRRKLEWYVRRGLAKLVDDNPLAIMLLFEPKGRPEDE 535

Query: 968  DNDFYIQSKKNICVGCGERNHYLRYRIVPSCYRMHFPEHLKSHRSHDIVLLCVDCHEVAH 789
            DNDFY+QSKKNICVGCGERNHYLRYRI+PSCYRMHFPEHLKSHRSHDIVLLCVDCHEVAH
Sbjct: 536  DNDFYVQSKKNICVGCGERNHYLRYRIIPSCYRMHFPEHLKSHRSHDIVLLCVDCHEVAH 595

Query: 788  SVAEKHKRQIAAEFGIPLFVKKVTESSQTDIIDXXXXXXXXXXXXXXSPXXXXXXXXXXX 609
            S AEK+K++IAAEFGIPLFV+KV +S +  +                SP           
Sbjct: 596  SAAEKYKKKIAAEFGIPLFVQKVVDSREAQVASQLSTSEVNTVEAGVSPLQLRTAAMALL 655

Query: 608  RHGPNMPAKRREELTLTVMKYFGGRKISTDDLKSALLVGMSPHQRRKHEKKRGLPFKHST 429
            RHGP MP+KR EEL  TVMKY+GGR+I+ +DL+ ALLVGMSPH+R++ E+K+G+  KHS 
Sbjct: 656  RHGPRMPSKRCEELRQTVMKYYGGREITEEDLEKALLVGMSPHERKRLERKKGMSLKHSK 715

Query: 428  RGHLSNEANYNNADSIRPYTLTEAIKWDYKNGLETATEANLGVDMDASTRDIHKGCDSKV 249
                 N+   +NA S+    +  A+K D + GL T      G            G D ++
Sbjct: 716  GAGFPNKEQESNARSMGTSPIDNALKVDGEGGLNTTKGEACGKQ--------ENGNDLEI 767

Query: 248  KGDAATTDGEDLNFNIASLLN-KGKATDTGEDLEDKSLSDFTYNSSQCKPSGTVSSTYNQ 72
              +   +D  +L+ + +     K       ++ E +S S+ T +    K  G  S  +N 
Sbjct: 768  TMEVLASDSNNLSSDRSETSEMKDMCVMDTDNCESRSQSEGTLDLFYPKSBGNASPKHNP 827

Query: 71   KMSLLGHGPHGKQVVDHLLKKYG 3
            K+SLLGHGPHGK+VVDHLLK+YG
Sbjct: 828  KLSLLGHGPHGKEVVDHLLKEYG 850


>ref|XP_002524188.1| 3'-5' exonuclease, putative [Ricinus communis]
            gi|223536557|gb|EEF38203.1| 3'-5' exonuclease, putative
            [Ricinus communis]
          Length = 977

 Score =  398 bits (1023), Expect = e-108
 Identities = 213/398 (53%), Positives = 257/398 (64%), Gaps = 16/398 (4%)
 Frame = -3

Query: 1148 SCKSPVYHNCRIYASDGRLLCYCDRRKLDWYLSRDLAKLVENDPPGIMLLFEPKGRPEDE 969
            SCKSPVYHNCRIYA+DGRLLCYCDRRKL+WYL R+LA LV+ +PP I LLFEPKGRPEDE
Sbjct: 514  SCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLHRELAILVDENPPAIRLLFEPKGRPEDE 573

Query: 968  DNDFYIQSKKNICVGCGERNHYLRYRIVPSCYRMHFPEHLKSHRSHDIVLLCVDCHEVAH 789
            DNDFYIQSK+NICVGCGE +HYLRYRI+PSCYR+HFPEHLKSHRSHDIVLLCVDCHEVAH
Sbjct: 574  DNDFYIQSKRNICVGCGEGSHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEVAH 633

Query: 788  SVAEKHKRQIAAEFGIPLFVKKVTESSQTDIIDXXXXXXXXXXXXXXSPXXXXXXXXXXX 609
            + AEK+KR +A EFGIPLFV+KV +S ++ II               SP           
Sbjct: 634  AAAEKYKRHVAVEFGIPLFVRKVVDSKESAIISESSSSLMTAEEAGVSPLQLRTAAMALL 693

Query: 608  RHGPNMPAKRREELTLTVMKYFGGRKISTDDLKSALLVGMSPHQRRKHEKKRGLPFKHST 429
            RHGP MP KRREELT  V +Y+GGR+IS +DL+ ALLVGMSPH+RR+ EKKRGL  K S 
Sbjct: 694  RHGPRMPPKRREELTQIVTQYYGGREISQEDLERALLVGMSPHERRRFEKKRGLSLKRSA 753

Query: 428  RGHLSNEANYNNA----DSIRPYTLTEAIKWDYKNGLETATEANLGVDMDASTRDIHKGC 261
                SN    ++      S+   ++T+          E  TE     D    T D   G 
Sbjct: 754  NNICSNNELVHDVTMVKSSVENNSITDTPDSSQTINSELRTEVKEDQDF-FKTTDPDVGV 812

Query: 260  DSKVK-GDAATTDGEDLNFNIASLLNKGKATDTGEDLEDKSLSDFTYNSSQCKPSGTVSS 84
             S ++  D +    +D+N N  + ++ GK    G D +   ++          P+G V S
Sbjct: 813  SSNLQVADVSAAAHKDMNSN-ENEVSDGKEICAGNDGDTCEIN---------PPNGIVCS 862

Query: 83   TY-----------NQKMSLLGHGPHGKQVVDHLLKKYG 3
             Y           N K+SLLGHGPHGKQVV+HLLK+YG
Sbjct: 863  NYPTHGGHGLSKNNSKLSLLGHGPHGKQVVEHLLKEYG 900


>ref|XP_002268685.1| PREDICTED: uncharacterized protein LOC100261955 [Vitis vinifera]
          Length = 936

 Score =  396 bits (1018), Expect = e-108
 Identities = 206/382 (53%), Positives = 247/382 (64%)
 Frame = -3

Query: 1148 SCKSPVYHNCRIYASDGRLLCYCDRRKLDWYLSRDLAKLVENDPPGIMLLFEPKGRPEDE 969
            SCKSPVYHNCRI+ASDGRLLCYCDRRKL+WY+ R LAKLV+++P  IMLLFEPKGRPEDE
Sbjct: 503  SCKSPVYHNCRIFASDGRLLCYCDRRKLEWYVRRGLAKLVDDNPLAIMLLFEPKGRPEDE 562

Query: 968  DNDFYIQSKKNICVGCGERNHYLRYRIVPSCYRMHFPEHLKSHRSHDIVLLCVDCHEVAH 789
            DNDFY+QSKKNICVGCGERNHYLRYRI+PSCYRMHFPEHLKSHRSHDIVLLCVDCHEVAH
Sbjct: 563  DNDFYVQSKKNICVGCGERNHYLRYRIIPSCYRMHFPEHLKSHRSHDIVLLCVDCHEVAH 622

Query: 788  SVAEKHKRQIAAEFGIPLFVKKVTESSQTDIIDXXXXXXXXXXXXXXSPXXXXXXXXXXX 609
            S AEK+K++IAAEFGIPLFV+KV +S +  +                SP           
Sbjct: 623  SAAEKYKKKIAAEFGIPLFVQKVVDSREAQVASQLSTSEVNTVEAGVSPLQLRTAAMALL 682

Query: 608  RHGPNMPAKRREELTLTVMKYFGGRKISTDDLKSALLVGMSPHQRRKHEKKRGLPFKHST 429
            RHGP MP+KR EEL  TVMKY+GGR+I+ +DL+ ALLVGMSPH+R++ E+K+G+  KHS 
Sbjct: 683  RHGPRMPSKRCEELRQTVMKYYGGREITEEDLEKALLVGMSPHERKRLERKKGMSLKHSK 742

Query: 428  RGHLSNEANYNNADSIRPYTLTEAIKWDYKNGLETATEANLGVDMDASTRDIHKGCDSKV 249
                 N+   +NA S+    +  A+K D               DM     D    C+S  
Sbjct: 743  GAGFPNKEQESNARSMGTSPIDNALKVD---------------DMCVMDTD---NCES-- 782

Query: 248  KGDAATTDGEDLNFNIASLLNKGKATDTGEDLEDKSLSDFTYNSSQCKPSGTVSSTYNQK 69
                                              +S S+ T +    K +G  S  +N K
Sbjct: 783  ----------------------------------RSQSEGTLDLFYPKSNGNASPKHNPK 808

Query: 68   MSLLGHGPHGKQVVDHLLKKYG 3
            +SLLGHGPHGK+VVDHLLK+YG
Sbjct: 809  LSLLGHGPHGKEVVDHLLKEYG 830


>ref|XP_003605934.1| Exosome complex exonuclease RRP6 [Medicago truncatula]
            gi|355506989|gb|AES88131.1| Exosome complex exonuclease
            RRP6 [Medicago truncatula]
          Length = 974

 Score =  387 bits (995), Expect = e-105
 Identities = 205/393 (52%), Positives = 252/393 (64%), Gaps = 11/393 (2%)
 Frame = -3

Query: 1148 SCKSPVYHNCRIYASDGRLLCYCDRRKLDWYLSRDLAKLVENDPPGIMLLFEPKGRPEDE 969
            SCKSPVYHNCRI+A+DGRLLCYCDR+KL+WYLSRDLAK+V+ +PP IMLLFEPKGRPEDE
Sbjct: 545  SCKSPVYHNCRIFANDGRLLCYCDRKKLEWYLSRDLAKVVDEEPPAIMLLFEPKGRPEDE 604

Query: 968  DNDFYIQSKKNICVGCGERNHYLRYRIVPSCYRMHFPEHLKSHRSHDIVLLCVDCHEVAH 789
             NDFYIQSKKNICVGCGE NHYLRYRI+PSCYR+HFPEHLKSHRSHDIVLLCVDCHE AH
Sbjct: 605  GNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEAAH 664

Query: 788  SVAEKHKRQIAAEFGIPLFVKKVTESSQTDIIDXXXXXXXXXXXXXXSPXXXXXXXXXXX 609
            + AEK+KR++A+EFGIPL+V++V    Q                   SP           
Sbjct: 665  AAAEKYKRKVASEFGIPLYVRRVIHPGQ--------ETEKPNDEGGVSPLQLRSAAVALL 716

Query: 608  RHGPNMPAKRREELTLTVMKYFGGRKISTDDLKSALLVGMSPHQRRKHEKKRGLPFKHST 429
            RHGP MP  RREELT  +  Y+GGR+IS +DL+ AL VGM+PH+RRK EKKRG+  KHST
Sbjct: 717  RHGPRMPHDRREELTEIIKTYYGGREISKEDLEKALQVGMTPHERRKFEKKRGVSSKHST 776

Query: 428  RGHLSNEANYNNADSIRPYTLTEAIKWDYKNGLETATEANLGVDMDASTRDIHKGCDSKV 249
                +     N+ D     +  + +K D  +G     E   G +    +       D  V
Sbjct: 777  GSASAVPYEGNDTDYAPGMSNGDTLKVDTLDGSYVNEETRSGDNRQDDSGKPSLASDLAV 836

Query: 248  KGDAATTDGEDLNFNIASLLNKGKATDTGEDLEDKSLSDFTYNSSQCKPS---------- 99
              D AT++G  +           K TD  +D    SL D   + ++ +P+          
Sbjct: 837  --DKATSNGNTIVV---------KTTDHDDDETSYSLVDTDESLNKMQPNVVSDEESIKD 885

Query: 98   -GTVSSTYNQKMSLLGHGPHGKQVVDHLLKKYG 3
              T  + ++ K+SLLGHGPHGKQVVDHLLK+YG
Sbjct: 886  EDTTQAKHHSKLSLLGHGPHGKQVVDHLLKEYG 918