BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00004570
         (1509 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268968.1| PREDICTED: DNA repair protein XRCC3 homolog ...   277   5e-72
emb|CAN60498.1| hypothetical protein VITISV_027869 [Vitis vinifera]   277   5e-72
ref|XP_002531657.1| X-ray repair cross complementing protein 3, ...   276   8e-72
ref|XP_004150781.1| PREDICTED: DNA repair protein XRCC3 homolog ...   262   2e-67
ref|XP_002324475.1| predicted protein [Populus trichocarpa] gi|2...   257   6e-66

>ref|XP_002268968.1| PREDICTED: DNA repair protein XRCC3 homolog [Vitis vinifera]
          Length = 300

 Score =  277 bits (709), Expect = 5e-72
 Identities = 156/293 (53%), Positives = 184/293 (62%), Gaps = 10/293 (3%)
 Frame = -2

Query: 1505 NPVNLSTSKCTTNCPALDKILSGGIPTKSITELVSESSCGKTXXXXXXXXXXXLPLTRGG 1326
            NP+ L+T KCT  CP LD+ L+GG+P  SITELV+ES  GKT           LP + GG
Sbjct: 9    NPLALTTQKCTLGCPILDRCLAGGVPCNSITELVAESGSGKTQLCLQLVLSAQLPTSLGG 68

Query: 1325 LSSSSLYIHTEFPFPLRRLHQXXXXXXXXXXXXXXXXXXSYNPLDHIFVRGVRSVEE--- 1155
            L++SSLYIH+EFPFP RRL Q                   YNPLD + VRGV+S ++   
Sbjct: 69   LAASSLYIHSEFPFPSRRLQQ---LSQSFRSSYSHVLDSEYNPLDFVLVRGVQSADQLFD 125

Query: 1154 -XXXXXXXXXXXLQTSPVRLIVIDSIAALFRSEFDNTSKDLKRRSLYFFRIAAKLKMYAT 978
                            PVRLIVIDSIAALFR EF+NT  DLKRRS  FF+I+ KLK  A 
Sbjct: 126  VLLKMDSVLLRPPTQLPVRLIVIDSIAALFRGEFENTPFDLKRRSSLFFKISGKLKALAE 185

Query: 977  KFDLAVLVTNQVVDVIGSGG--NGMRIGNFGSLFSSGRRVCPALGLSWANCVNTRLFLSR 804
            +F LAV+VTNQVVD +G  G  NG+R+GN GSL+SSGRRVC ALGLSWANCVN+RLFLSR
Sbjct: 186  RFGLAVVVTNQVVDFVGQAGGLNGLRVGNLGSLWSSGRRVCAALGLSWANCVNSRLFLSR 245

Query: 803  NXXXXXXXXXXXXXXXXVR----TRRKLQVVFAPHLPESSCEYVVLREGVFGL 657
            N                      TRR L V+FAPHLPESSCE+V+ REGV G+
Sbjct: 246  NEEIVGEVTGLGGVGAGDTVSRLTRRHLHVIFAPHLPESSCEFVISREGVLGV 298


>emb|CAN60498.1| hypothetical protein VITISV_027869 [Vitis vinifera]
          Length = 2077

 Score =  277 bits (709), Expect = 5e-72
 Identities = 157/293 (53%), Positives = 185/293 (63%), Gaps = 10/293 (3%)
 Frame = -2

Query: 1505 NPVNLSTSKCTTNCPALDKILSGGIPTKSITELVSESSCGKTXXXXXXXXXXXLPLTRGG 1326
            NP+ L+T KCT  CP LD+ L+GG+P  SITELV+ES  GKT           LP + GG
Sbjct: 1786 NPLALTTQKCTLGCPILDRCLAGGVPCNSITELVAESGSGKTQLCLQLVLSAQLPTSLGG 1845

Query: 1325 LSSSSLYIHTEFPFPLRRLHQXXXXXXXXXXXXXXXXXXSYNPLDHIFVRGVRSVEE--- 1155
            L++SSLYIH+EFPFP RRL Q                   YNPLD + VRGV+S ++   
Sbjct: 1846 LAASSLYIHSEFPFPSRRLQQ---LSQSFRSSYSHVLDSEYNPLDFVLVRGVQSADQLFD 1902

Query: 1154 -XXXXXXXXXXXLQTSPVRLIVIDSIAALFRSEFDNTSKDLKRRSLYFFRIAAKLKMYAT 978
                            PVRLIVIDSIAALFR EF+NT  DLKRRS  FF+I+ KLK  A 
Sbjct: 1903 VLLKMDSVLLRPPTQLPVRLIVIDSIAALFRGEFENTPFDLKRRSSLFFKISGKLKALAE 1962

Query: 977  KFDLAVLVTNQVVDVIGSGG--NGMRIGNFGSLFSSGRRVCPALGLSWANCVNTRLFLSR 804
            +F LAV+VTNQVVD +G  G  NG+R+GN GSL+SSGRRVC ALGLSWANCVN+RLFLSR
Sbjct: 1963 RFGLAVVVTNQVVDFVGQAGGLNGLRVGNLGSLWSSGRRVCAALGLSWANCVNSRLFLSR 2022

Query: 803  NXXXXXXXXXXXXXXXXVR----TRRKLQVVFAPHLPESSCEYVVLREGVFGL 657
            N                      TRR L V+FAPHLPESSCE+V+ REGV G+
Sbjct: 2023 NEEIVXEVTGLGGVGAGDTVSRLTRRHLHVIFAPHLPESSCEFVISREGVLGV 2075


>ref|XP_002531657.1| X-ray repair cross complementing protein 3, xrcc3, putative [Ricinus
            communis] gi|223528715|gb|EEF30727.1| X-ray repair cross
            complementing protein 3, xrcc3, putative [Ricinus
            communis]
          Length = 301

 Score =  276 bits (707), Expect = 8e-72
 Identities = 157/291 (53%), Positives = 188/291 (64%), Gaps = 12/291 (4%)
 Frame = -2

Query: 1493 LSTSKCTTNCPALDKILSGGIPTKSITELVSESSCGKTXXXXXXXXXXXLPLTRGGLSSS 1314
            + T KCT  CP LD+ L+GGIP  SITE+V+ES  GKT           LPL+ GGLS+S
Sbjct: 11   IPTQKCTLGCPILDRCLNGGIPCNSITEIVAESGTGKTQLCLQLSLYAQLPLSLGGLSAS 70

Query: 1313 SLYIHTEFPFPLRRLH------QXXXXXXXXXXXXXXXXXXSYNPLDHIFVRGVRSVEEX 1152
            SLY+HTEFPFP RRLH      Q                    NP D+IFV  VRS +  
Sbjct: 71   SLYLHTEFPFPFRRLHQLSHSFQSQHPQIFINNNNNDTINNYDNPCDNIFVHSVRSADYL 130

Query: 1151 XXXXXXXXXXLQTS----PVRLIVIDSIAALFRSEFDNTSKDLKRRSLYFFRIAAKLKMY 984
                      L  S    PVRLIVIDS+AALFRSEF+NT+ DLKRRS  FF+I+AKL+  
Sbjct: 131  FDIMPKIESFLVYSKTHLPVRLIVIDSVAALFRSEFENTATDLKRRSALFFKISAKLRAL 190

Query: 983  ATKFDLAVLVTNQVVDVIGSGG--NGMRIGNFGSLFSSGRRVCPALGLSWANCVNTRLFL 810
            A +F+LAV+V+NQVVD +GSG   NG RIG+ GSL+SSGRRVCPALGL+WANCVN+RLFL
Sbjct: 191  AWRFNLAVVVSNQVVDFVGSGDGLNGARIGDLGSLYSSGRRVCPALGLAWANCVNSRLFL 250

Query: 809  SRNXXXXXXXXXXXXXXXXVRTRRKLQVVFAPHLPESSCEYVVLREGVFGL 657
            SR+                 +TRR+L VVFAPHLP SSCE+V+ REGVFG+
Sbjct: 251  SRD--ENGMVDGAESGSFCSQTRRRLHVVFAPHLPYSSCEFVIRREGVFGI 299


>ref|XP_004150781.1| PREDICTED: DNA repair protein XRCC3 homolog [Cucumis sativus]
            gi|449506730|ref|XP_004162832.1| PREDICTED: DNA repair
            protein XRCC3 homolog [Cucumis sativus]
          Length = 294

 Score =  262 bits (669), Expect = 2e-67
 Identities = 149/287 (51%), Positives = 179/287 (62%), Gaps = 9/287 (3%)
 Frame = -2

Query: 1490 STSKCTTNCPALDKILSGGIPTKSITELVSESSCGKTXXXXXXXXXXXLPLTRGGLSSSS 1311
            +T KCT  CP +D+ + GG+   S+TE+V+ES CGKT           LPL+ GGL++SS
Sbjct: 12   TTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQLPLSNGGLNASS 71

Query: 1310 LYIHTEFPFPLRRLHQXXXXXXXXXXXXXXXXXXSYNPLDHIFVRGVRSVEEXXXXXXXX 1131
            LYIHTEFPFP RRL Q                    NP DHIFV  V S  +        
Sbjct: 72   LYIHTEFPFPFRRLQQLSQAFSSSYPQFS-------NPSDHIFVEPVHSAHQLFDIMPKI 124

Query: 1130 XXXLQTS----PVRLIVIDSIAALFRSEFDNTSKDLKRRSLYFFRIAAKLKMYATKFDLA 963
               L+      P+RLIVIDSIAALFRS+F+NT  DLKRRS  FF+I+ KLK+ A K+ LA
Sbjct: 125  ESSLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKKYSLA 184

Query: 962  VLVTNQVVDVIGS--GGNGMRIGNFGSLFSSGRRVCPALGLSWANCVNTRLFLSRN---X 798
            V++TNQVVD++GS  G N +RIGN   L SS RRVCPALGL+WANCVN+RLFLSRN    
Sbjct: 185  VVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRNEEVV 244

Query: 797  XXXXXXXXXXXXXXXVRTRRKLQVVFAPHLPESSCEYVVLREGVFGL 657
                            RTRR L VVFAPHLP+SSCEYV+ REGV G+
Sbjct: 245  GEGEGMMNGSELVQRRRTRRWLHVVFAPHLPKSSCEYVINREGVVGV 291


>ref|XP_002324475.1| predicted protein [Populus trichocarpa] gi|222865909|gb|EEF03040.1|
            predicted protein [Populus trichocarpa]
          Length = 290

 Score =  257 bits (656), Expect = 6e-66
 Identities = 142/285 (49%), Positives = 179/285 (62%), Gaps = 6/285 (2%)
 Frame = -2

Query: 1493 LSTSKCTTNCPALDKILSGGIPTKSITELVSESSCGKTXXXXXXXXXXXLPLTRGGLSSS 1314
            L   KC+  CP LD  + GGIP  SITE+V+ES  GKT           LP   GGLS+S
Sbjct: 7    LPVEKCSLGCPILDCCMGGGIPCNSITEIVAESGSGKTQLCLQLSLRAQLPPFLGGLSAS 66

Query: 1313 SLYIHTEFPFPLRRLHQXXXXXXXXXXXXXXXXXXSYNPLDHIFVRGVRSVEEXXXXXXX 1134
            SLY++TEFPFP RRLHQ                   Y+P D IF++ V + ++       
Sbjct: 67   SLYLYTEFPFPTRRLHQLSSALQCQYPQIFVSN---YDPCDSIFLQSVNTADQLLDIMPQ 123

Query: 1133 XXXXLQTS----PVRLIVIDSIAALFRSEFDNTSKDLKRRSLYFFRIAAKLKMYATKFDL 966
                L+ S    PVR+IVIDS+AALFR+EF+NT+ DL RRS  FF+I+ KLK +A +F+L
Sbjct: 124  VESFLENSKTRLPVRVIVIDSMAALFRAEFENTASDLIRRSSLFFKISGKLKEFAKRFNL 183

Query: 965  AVLVTNQVVDVI--GSGGNGMRIGNFGSLFSSGRRVCPALGLSWANCVNTRLFLSRNXXX 792
             VLVTNQV+DV+  G G N +RIGN   ++SSGRRVCPALGLSWANCVN+RLFLS++   
Sbjct: 184  VVLVTNQVMDVVDSGEGLNEVRIGNLSGMYSSGRRVCPALGLSWANCVNSRLFLSKDEYE 243

Query: 791  XXXXXXXXXXXXXVRTRRKLQVVFAPHLPESSCEYVVLREGVFGL 657
                           TRR+L VVFAPHLP+ SCE+V+ REGV G+
Sbjct: 244  SGLVGGGESGFLSRETRRRLHVVFAPHLPDLSCEFVIRREGVVGV 288