BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00004569
         (844 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_175268.1| 50S ribosomal protein L18 [Arabidopsis thaliana...   224   2e-56
ref|XP_002891426.1| ribosomal protein L18 family protein [Arabid...   223   4e-56
gb|AFK34990.1| unknown [Lotus japonicus] gi|388495768|gb|AFK3595...   219   6e-55
ref|XP_002509912.1| 50S ribosomal protein L18, chloroplast precu...   217   3e-54
ref|XP_003595391.1| 50S ribosomal protein L18 [Medicago truncatu...   217   3e-54

>ref|NP_175268.1| 50S ribosomal protein L18 [Arabidopsis thaliana]
           gi|73621536|sp|Q9SX68.1|RK18_ARATH RecName: Full=50S
           ribosomal protein L18, chloroplastic; AltName:
           Full=CL18; Flags: Precursor
           gi|5733872|gb|AAD49760.1|AC007932_8 Similar to 50S
           Ribosomal protein L18 from Thermotoga maritima
           gb|AE001798. ESTs gb|AI993387, gb|T75951 and gb|T22182
           come from this gene [Arabidopsis thaliana]
           gi|12484209|gb|AAG54003.1|AF336922_1 putative ribosomal
           protein L18 [Arabidopsis thaliana]
           gi|110740956|dbj|BAE98573.1| hypothetical protein
           [Arabidopsis thaliana] gi|332194156|gb|AEE32277.1| 50S
           ribosomal protein L18 [Arabidopsis thaliana]
          Length = 170

 Score =  224 bits (571), Expect = 2e-56
 Identities = 115/154 (74%), Positives = 129/154 (83%), Gaps = 2/154 (1%)
 Frame = +2

Query: 119 AAALGGWSQNVCVMSTSPPKHQQRPTSLVLQARTRT--EDRQARHARIRKKVEGTTERPR 292
           +A LG   Q+  V          +  S+V++A+T+T  EDR ARH+RIRKKV GTTERPR
Sbjct: 17  SAFLGNGLQHRAVFLKPWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPR 76

Query: 293 LCVFRSNKHMYVQVIDDSKMHTLASASTVQKPIAEEFDYTSGPTIEIAKKVGEVIAKACL 472
           LCVFRSNKH+YVQVIDD+KMHTLASAST QKPI+EEFDYTSGPTIE+AKKVGEVIAK+CL
Sbjct: 77  LCVFRSNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCL 136

Query: 473 EKGIQKVAFDRGGYPYHGRIEALADAAREHGLQF 574
           EKGI KVAFDRGGYPYHGRIEALA AAREHGLQF
Sbjct: 137 EKGITKVAFDRGGYPYHGRIEALAAAAREHGLQF 170


>ref|XP_002891426.1| ribosomal protein L18 family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297337268|gb|EFH67685.1| ribosomal protein
           L18 family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 170

 Score =  223 bits (568), Expect = 4e-56
 Identities = 110/128 (85%), Positives = 121/128 (94%), Gaps = 2/128 (1%)
 Frame = +2

Query: 197 SLVLQARTRT--EDRQARHARIRKKVEGTTERPRLCVFRSNKHMYVQVIDDSKMHTLASA 370
           S+V++A+T+T  EDR ARH+RIRKKV GTTERPRLCVFRSNKH+YVQVIDD+KMHTLASA
Sbjct: 43  SMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVIDDTKMHTLASA 102

Query: 371 STVQKPIAEEFDYTSGPTIEIAKKVGEVIAKACLEKGIQKVAFDRGGYPYHGRIEALADA 550
           ST QKPI+EEFDYTSGPTIE+AKKVGEVIAK+CLEKGI KVAFDRGGYPYHGRIEALA A
Sbjct: 103 STKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRIEALAAA 162

Query: 551 AREHGLQF 574
           AREHGLQF
Sbjct: 163 AREHGLQF 170


>gb|AFK34990.1| unknown [Lotus japonicus] gi|388495768|gb|AFK35950.1| unknown
           [Lotus japonicus]
          Length = 162

 Score =  219 bits (558), Expect = 6e-55
 Identities = 112/161 (69%), Positives = 131/161 (81%)
 Frame = +2

Query: 92  SFLHHQCAAAAALGGWSQNVCVMSTSPPKHQQRPTSLVLQARTRTEDRQARHARIRKKVE 271
           SFLH  CA  ++    S +  + +TS P     P  +  ++RTRT+DR ARHARIRKKVE
Sbjct: 7   SFLH-SCAFPSS----SSSSSLFTTSTPNPNSLPFVVEAKSRTRTDDRTARHARIRKKVE 61

Query: 272 GTTERPRLCVFRSNKHMYVQVIDDSKMHTLASASTVQKPIAEEFDYTSGPTIEIAKKVGE 451
           GT ERPRL VFRSNKH+ VQVIDD+KMHTLASAST+QK IAEEF YT+GPTIE+AKKVGE
Sbjct: 62  GTPERPRLAVFRSNKHLAVQVIDDTKMHTLASASTMQKAIAEEFSYTAGPTIEVAKKVGE 121

Query: 452 VIAKACLEKGIQKVAFDRGGYPYHGRIEALADAAREHGLQF 574
           +IAK+CLEKGI KVAFDRGGYPYHGR++ALADAARE+GL F
Sbjct: 122 IIAKSCLEKGITKVAFDRGGYPYHGRVQALADAARENGLDF 162


>ref|XP_002509912.1| 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus
           communis] gi|223549811|gb|EEF51299.1| 50S ribosomal
           protein L18, chloroplast precursor, putative [Ricinus
           communis]
          Length = 164

 Score =  217 bits (552), Expect = 3e-54
 Identities = 109/136 (80%), Positives = 121/136 (88%), Gaps = 2/136 (1%)
 Frame = +2

Query: 173 PKHQQRPTSLVLQARTRT--EDRQARHARIRKKVEGTTERPRLCVFRSNKHMYVQVIDDS 346
           P   Q P  L ++A T+T  E+R ARH RIRKKVEGT ERPRL VFRSNKH+YVQVIDDS
Sbjct: 29  PTPIQPPRFLRIEANTKTRRENRTARHVRIRKKVEGTPERPRLSVFRSNKHLYVQVIDDS 88

Query: 347 KMHTLASASTVQKPIAEEFDYTSGPTIEIAKKVGEVIAKACLEKGIQKVAFDRGGYPYHG 526
           KMHTLASAST+QKPI+EEFDY+SGPT+E+AKKVGEVIAK+CLEKGI KVAFDRGGYPYHG
Sbjct: 89  KMHTLASASTMQKPISEEFDYSSGPTLEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHG 148

Query: 527 RIEALADAAREHGLQF 574
           RIEALADAARE+GLQF
Sbjct: 149 RIEALADAARENGLQF 164


>ref|XP_003595391.1| 50S ribosomal protein L18 [Medicago truncatula]
           gi|124360326|gb|ABN08339.1| Ribosomal protein L18
           [Medicago truncatula] gi|355484439|gb|AES65642.1| 50S
           ribosomal protein L18 [Medicago truncatula]
           gi|388519743|gb|AFK47933.1| unknown [Medicago
           truncatula]
          Length = 166

 Score =  217 bits (552), Expect = 3e-54
 Identities = 106/161 (65%), Positives = 128/161 (79%)
 Frame = +2

Query: 92  SFLHHQCAAAAALGGWSQNVCVMSTSPPKHQQRPTSLVLQARTRTEDRQARHARIRKKVE 271
           SFLH  C   ++    S ++  + T  P       S V+QA TR EDR ARH R+RKK+E
Sbjct: 7   SFLH-SCTFPSSSSSSSSSLFTIPTPNPNSSSSSLSFVVQATTRREDRIARHVRLRKKIE 65

Query: 272 GTTERPRLCVFRSNKHMYVQVIDDSKMHTLASASTVQKPIAEEFDYTSGPTIEIAKKVGE 451
           GT ERPRL VFRSNKH++VQVIDD+KMHTLASAST+QK IAEE ++TSGPTIE+AK+VGE
Sbjct: 66  GTPERPRLSVFRSNKHLFVQVIDDTKMHTLASASTMQKAIAEELNFTSGPTIEVAKRVGE 125

Query: 452 VIAKACLEKGIQKVAFDRGGYPYHGRIEALADAAREHGLQF 574
           +IAK+CLEKGI KV FDRGGYPYHGR++A+ADAAREHGL+F
Sbjct: 126 IIAKSCLEKGITKVVFDRGGYPYHGRVKAIADAAREHGLEF 166