BLASTX nr result

ID: Coptis25_contig00004507 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00004507
         (359 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI19797.3| unnamed protein product [Vitis vinifera]               56   3e-06
ref|XP_002280700.1| PREDICTED: protein LTV1 homolog [Vitis vinif...    56   3e-06

>emb|CBI19797.3| unnamed protein product [Vitis vinifera]
          Length = 500

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 29/46 (63%), Positives = 34/46 (73%), Gaps = 7/46 (15%)
 Frame = +3

Query: 96  IRKEILELGFPDDWC-------EIKNSGGDSAYYENSKAKLDQLSL 212
           +R+EILELGFPDD         EIKN+GG SA+Y NSKA+LDQL L
Sbjct: 70  VRREILELGFPDDGYNYLTHLREIKNTGGGSAFYHNSKARLDQLPL 115


>ref|XP_002280700.1| PREDICTED: protein LTV1 homolog [Vitis vinifera]
          Length = 576

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 29/46 (63%), Positives = 34/46 (73%), Gaps = 7/46 (15%)
 Frame = +3

Query: 96  IRKEILELGFPDDWC-------EIKNSGGDSAYYENSKAKLDQLSL 212
           +R+EILELGFPDD         EIKN+GG SA+Y NSKA+LDQL L
Sbjct: 111 VRREILELGFPDDGYNYLTHLREIKNTGGGSAFYHNSKARLDQLPL 156


Top