BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00004500
         (234 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI34156.3| unnamed protein product [Vitis vinifera]               94   1e-17
ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat...    94   1e-17
emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]    94   1e-17
ref|XP_002319049.1| predicted protein [Populus trichocarpa] gi|2...    91   1e-16
ref|XP_002514843.1| pentatricopeptide repeat-containing protein,...    90   2e-16

>emb|CBI34156.3| unnamed protein product [Vitis vinifera]
          Length = 442

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 42/76 (55%), Positives = 56/76 (73%)
 Frame = -3

Query: 229 YGIIIDAVCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAKSVFDLMV 50
           +  ++DA+CK+G V EA E+   MI+RG E D VTY++LMDG+CLQ  M EA  VFD+MV
Sbjct: 258 FSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMV 317

Query: 49  ARGHGPDVVSYSILIN 2
            +G  PDV+SY+ LIN
Sbjct: 318 RKGFAPDVISYTTLIN 333



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 27/77 (35%), Positives = 47/77 (61%)
 Frame = -3

Query: 232 TYGIIIDAVCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAKSVFDLM 53
           T  I+I++ C    V  AF +   +++ G + D  T+++L+ G C++G++ EA  +FD M
Sbjct: 82  TLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKM 141

Query: 52  VARGHGPDVVSYSILIN 2
           +  G  P+VV+Y  LIN
Sbjct: 142 IDEGFQPNVVTYGTLIN 158



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 26/77 (33%), Positives = 45/77 (58%)
 Frame = -3

Query: 232 TYGIIIDAVCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAKSVFDLM 53
           TYG +I+ +CK G    A  L + M +   + D V Y+S++D  C   ++ EA ++F  M
Sbjct: 152 TYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQM 211

Query: 52  VARGHGPDVVSYSILIN 2
           V +G  PD+ +Y+ L++
Sbjct: 212 VGQGISPDIFTYTSLVH 228


>ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 42/76 (55%), Positives = 56/76 (73%)
 Frame = -3

Query: 229 YGIIIDAVCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAKSVFDLMV 50
           +  ++DA+CK+G V EA E+   MI+RG E D VTY++LMDG+CLQ  M EA  VFD+MV
Sbjct: 269 FSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMV 328

Query: 49  ARGHGPDVVSYSILIN 2
            +G  PDV+SY+ LIN
Sbjct: 329 RKGFAPDVISYTTLIN 344



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 33/77 (42%), Positives = 51/77 (66%)
 Frame = -3

Query: 232 TYGIIIDAVCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAKSVFDLM 53
           +Y  +I+  CK   +D+A  LF+ M  +    DT TY++LM G C  GR+++A ++F  M
Sbjct: 338 SYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEM 397

Query: 52  VARGHGPDVVSYSILIN 2
           VARG  PD+V+YSIL++
Sbjct: 398 VARGQMPDLVTYSILLD 414



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 27/77 (35%), Positives = 47/77 (61%)
 Frame = -3

Query: 232 TYGIIIDAVCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAKSVFDLM 53
           T  I+I++ C    V  AF +   +++ G + D  T+++L+ G C++G++ EA  +FD M
Sbjct: 93  TLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKM 152

Query: 52  VARGHGPDVVSYSILIN 2
           +  G  P+VV+Y  LIN
Sbjct: 153 IDEGFQPNVVTYGTLIN 169



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 26/77 (33%), Positives = 45/77 (58%)
 Frame = -3

Query: 232 TYGIIIDAVCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAKSVFDLM 53
           TYG +I+ +CK G    A  L + M +   + D V Y+S++D  C   ++ EA ++F  M
Sbjct: 163 TYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQM 222

Query: 52  VARGHGPDVVSYSILIN 2
           V +G  PD+ +Y+ L++
Sbjct: 223 VGQGISPDIFTYTSLVH 239



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 26/77 (33%), Positives = 42/77 (54%)
 Frame = -3

Query: 232 TYGIIIDAVCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAKSVFDLM 53
           TY  ++  +C  G + +A  LF  M+ RG   D VTYS L+D  C    ++EA ++   +
Sbjct: 373 TYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAI 432

Query: 52  VARGHGPDVVSYSILIN 2
            A    PD+  Y+I+I+
Sbjct: 433 EASNLNPDIQVYNIIID 449


>emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 42/76 (55%), Positives = 56/76 (73%)
 Frame = -3

Query: 229 YGIIIDAVCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAKSVFDLMV 50
           +  ++DA+CK+G V EA E+   MI+RG E D VTY++LMDG+CLQ  M EA  VFD+MV
Sbjct: 278 FSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMV 337

Query: 49  ARGHGPDVVSYSILIN 2
            +G  PDV+SY+ LIN
Sbjct: 338 RKGFAPDVISYTTLIN 353



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 33/77 (42%), Positives = 51/77 (66%)
 Frame = -3

Query: 232 TYGIIIDAVCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAKSVFDLM 53
           +Y  +I+  CK   +D+A  LF+ M  +    DT TY++LM G C  GR+++A ++F  M
Sbjct: 347 SYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEM 406

Query: 52  VARGHGPDVVSYSILIN 2
           VARG  PD+V+YSIL++
Sbjct: 407 VARGQMPDLVTYSILLD 423



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 27/77 (35%), Positives = 47/77 (61%)
 Frame = -3

Query: 232 TYGIIIDAVCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAKSVFDLM 53
           T  I+I++ C    V  AF +   +++ G + D  T+++L+ G C++G++ EA  +FD M
Sbjct: 102 TLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKM 161

Query: 52  VARGHGPDVVSYSILIN 2
           +  G  P+VV+Y  LIN
Sbjct: 162 IDEGFQPNVVTYGTLIN 178



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 26/77 (33%), Positives = 45/77 (58%)
 Frame = -3

Query: 232 TYGIIIDAVCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAKSVFDLM 53
           TYG +I+ +CK G    A  L + M +   + D V Y+S++D  C   ++ EA ++F  M
Sbjct: 172 TYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQM 231

Query: 52  VARGHGPDVVSYSILIN 2
           V +G  PD+ +Y+ L++
Sbjct: 232 VGQGISPDIFTYTSLVH 248



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 26/77 (33%), Positives = 42/77 (54%)
 Frame = -3

Query: 232 TYGIIIDAVCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAKSVFDLM 53
           TY  ++  +C  G + +A  LF  M+ RG   D VTYS L+D  C    ++EA ++   +
Sbjct: 382 TYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAI 441

Query: 52  VARGHGPDVVSYSILIN 2
            A    PD+  Y+I+I+
Sbjct: 442 EASNLNPDIQVYNIIID 458


>ref|XP_002319049.1| predicted protein [Populus trichocarpa] gi|222857425|gb|EEE94972.1|
           predicted protein [Populus trichocarpa]
          Length = 585

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 41/77 (53%), Positives = 56/77 (72%)
 Frame = -3

Query: 232 TYGIIIDAVCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAKSVFDLM 53
           T+ I++D +CK+GM+ EA  +F+ M E G E D  TYS+LMDGYCLQ +M EA+ +FD+M
Sbjct: 283 TFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIM 342

Query: 52  VARGHGPDVVSYSILIN 2
           V +G  P V  Y+ILIN
Sbjct: 343 VGKGFAPSVRVYNILIN 359



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 29/76 (38%), Positives = 50/76 (65%)
 Frame = -3

Query: 229 YGIIIDAVCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAKSVFDLMV 50
           Y  +ID++CKD   +EA   F  M+++G   + VTYSS++ G+C  G++ EA S+F  M+
Sbjct: 214 YNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMI 273

Query: 49  ARGHGPDVVSYSILIN 2
            R   P+ V+++IL++
Sbjct: 274 GRNVMPNTVTFTILVD 289



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 31/77 (40%), Positives = 47/77 (61%)
 Frame = -3

Query: 232 TYGIIIDAVCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAKSVFDLM 53
           TY  I+   C  G ++EA  LF+ MI R    +TVT++ L+DG C +G + EA+ VF++M
Sbjct: 248 TYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMM 307

Query: 52  VARGHGPDVVSYSILIN 2
              G  PD  +YS L++
Sbjct: 308 TENGVEPDAYTYSALMD 324



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 32/76 (42%), Positives = 47/76 (61%)
 Frame = -3

Query: 229 YGIIIDAVCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAKSVFDLMV 50
           Y I+I+  CK   ++EA  L   M +R    DTVTYS+LM G+C  GR + A+ +F  M 
Sbjct: 354 YNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMC 413

Query: 49  ARGHGPDVVSYSILIN 2
           + G  PD ++YSIL++
Sbjct: 414 SYGLLPDSITYSILLD 429



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 28/77 (36%), Positives = 47/77 (61%)
 Frame = -3

Query: 232 TYGIIIDAVCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAKSVFDLM 53
           TY I++D +CK G +DEAF L + M E   E     Y+ L+ G C  G+++ A+ +F  +
Sbjct: 423 TYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNL 482

Query: 52  VARGHGPDVVSYSILIN 2
             +G  P VV+Y+++I+
Sbjct: 483 FVKGIQPSVVTYTVMIS 499



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 29/77 (37%), Positives = 44/77 (57%)
 Frame = -3

Query: 232 TYGIIIDAVCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAKSVFDLM 53
           TY  II  +CK G    A +L + M E+G + D V Y++++D  C   R  EA   F  M
Sbjct: 178 TYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEM 237

Query: 52  VARGHGPDVVSYSILIN 2
           V +G  P+VV+YS +++
Sbjct: 238 VDQGIPPNVVTYSSILH 254


>ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545894|gb|EEF47397.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 594

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 43/76 (56%), Positives = 54/76 (71%)
 Frame = -3

Query: 232 TYGIIIDAVCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAKSVFDLM 53
           T+ I +D  CK GMV EA  +   MIERG   + VTY+SLMDGYCL  +M EA+ VFD+M
Sbjct: 386 TFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIM 445

Query: 52  VARGHGPDVVSYSILI 5
           V +G  PDV+SY+ILI
Sbjct: 446 VNKGCAPDVLSYNILI 461



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 33/77 (42%), Positives = 52/77 (67%)
 Frame = -3

Query: 232 TYGIIIDAVCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAKSVFDLM 53
           T+ I++DA+CK+G+V EA  +F  MI+   E D VTYSSL+ G C     KE+ ++ + M
Sbjct: 316 TFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEM 375

Query: 52  VARGHGPDVVSYSILIN 2
           ++R   PDVV++SI ++
Sbjct: 376 LSRNIRPDVVTFSIWVD 392



 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 33/77 (42%), Positives = 50/77 (64%)
 Frame = -3

Query: 232 TYGIIIDAVCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAKSVFDLM 53
           +Y IIID++CK+ +V+EA +LF  M   G     VTY+SL+ G C  G+ K+A  +F  M
Sbjct: 246 SYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEM 305

Query: 52  VARGHGPDVVSYSILIN 2
           +     PDVV++SIL++
Sbjct: 306 LEWNMKPDVVTFSILVD 322



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 28/77 (36%), Positives = 47/77 (61%)
 Frame = -3

Query: 232 TYGIIIDAVCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAKSVFDLM 53
           +Y I+I   CK   +DEA +LF  M  +G   +++T+++L+ G C  GR   AK +F  M
Sbjct: 456 SYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKM 515

Query: 52  VARGHGPDVVSYSILIN 2
            + G  PD+++YS L++
Sbjct: 516 GSHGCPPDLITYSTLLS 532



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 27/77 (35%), Positives = 47/77 (61%)
 Frame = -3

Query: 232 TYGIIIDAVCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAKSVFDLM 53
           TY  ++D  C    +DEA ++F  M+ +G   D ++Y+ L+ GYC   R+ EAK +FD M
Sbjct: 421 TYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEM 480

Query: 52  VARGHGPDVVSYSILIN 2
             +G  P+ ++++ LI+
Sbjct: 481 SHKGLTPNSITHTTLIS 497



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 31/77 (40%), Positives = 45/77 (58%)
 Frame = -3

Query: 232 TYGIIIDAVCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAKSVFDLM 53
           TY  +I  +C  G   +A  LF+ M+E   + D VT+S L+D  C +G + EA SVF  M
Sbjct: 281 TYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKM 340

Query: 52  VARGHGPDVVSYSILIN 2
           +     PD+V+YS LI+
Sbjct: 341 IQIAMEPDIVTYSSLIH 357