BLASTX nr result
ID: Coptis25_contig00004418
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00004418
(1407 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABQ23585.1| putative KH-domain containing protein [Medicago t... 359 8e-97
ref|XP_003536289.1| PREDICTED: RNA-binding protein Nova-1-like [... 353 5e-95
ref|XP_003556300.1| PREDICTED: RNA-binding protein Nova-1-like [... 352 2e-94
ref|XP_002264331.2| PREDICTED: RNA-binding protein Nova-1-like [... 346 7e-93
emb|CBI31382.3| unnamed protein product [Vitis vinifera] 346 7e-93
>gb|ABQ23585.1| putative KH-domain containing protein [Medicago truncatula]
Length = 334
Score = 359 bits (922), Expect = 8e-97
Identities = 189/303 (62%), Positives = 233/303 (76%), Gaps = 8/303 (2%)
Frame = +2
Query: 152 EDENEGPTQIRFLVSNGAAGSVIGKGGSTITEFQSLSGARIVLSRNNEFFPGTTDRIVLV 331
+D E PT +RFLVSN AAGSVIGKGGSTIT+FQS SGARI LSRNNEFFPGTTDRI++V
Sbjct: 29 QDSVEKPTYVRFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNNEFFPGTTDRIIMV 88
Query: 332 SGPFNDILHAVELILGKLVAEGNAEESNEYDSRAKVRLIVPNSSCXXXXXXXXXXXXSFM 511
SG N++L AVELIL KL++E ++E+ N+ + + KVRLIVPN SC SF+
Sbjct: 89 SGAINEVLRAVELILSKLLSELHSEDDNDVEPKTKVRLIVPNGSCGGIIGKGGATIRSFI 148
Query: 512 KDSQASIKISPQDNNYNGLTDRLVTVTGSLEEQLRAIFLILAKLAEDSYYPHSMNAPFSY 691
++SQA IKISPQDN+Y G DR+VTVTG+L+EQ+R I LI++KLAED +Y HSM++PF+Y
Sbjct: 149 EESQAGIKISPQDNSYYGQNDRIVTVTGTLDEQMRGIDLIVSKLAEDPHYSHSMSSPFTY 208
Query: 692 AGV---NFSSLPYGYMAPSVGILARNG----RNGSGG-FQNNKEDRSNSVTIGVADEHXX 847
+G + +PY Y+ PSV A NG NG+G FQN+KEDRSNS+TIGVADEH
Sbjct: 209 SGAYVSGYQGVPYTYVLPSVAPPAYNGVNYRPNGTGAKFQNSKEDRSNSMTIGVADEHIG 268
Query: 848 XXXXXXXXNLMDINQTSGARIKISDRGDFISGTSERKVIITGSQAAIRTAENMIMQKVAY 1027
N+ DI+QTSGA+IKISDRGD+ISGT++RKV ITGSQ AIRTAE+MI+QKVAY
Sbjct: 269 LVVGRGGRNISDISQTSGAKIKISDRGDYISGTTDRKVTITGSQRAIRTAESMILQKVAY 328
Query: 1028 ATE 1036
ATE
Sbjct: 329 ATE 331
>ref|XP_003536289.1| PREDICTED: RNA-binding protein Nova-1-like [Glycine max]
Length = 337
Score = 353 bits (907), Expect = 5e-95
Identities = 188/303 (62%), Positives = 227/303 (74%), Gaps = 9/303 (2%)
Frame = +2
Query: 155 DENEGPTQIRFLVSNGAAGSVIGKGGSTITEFQSLSGARIVLSRNNEFFPGTTDRIVLVS 334
D E PT IRFLVSN AAGSVIGKGGSTIT+FQS SGARI LSRN+EFFPGTTDRI++VS
Sbjct: 30 DSEEKPTYIRFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNHEFFPGTTDRIIMVS 89
Query: 335 GPFNDILHAVELILGKLVAEGNAEESNEYDSRAKVRLIVPNSSCXXXXXXXXXXXXSFMK 514
G N+I AVELIL KL++E ++E+ N+ + + KVRL+VPN SC SF++
Sbjct: 90 GAINEIQRAVELILSKLLSELHSEDDNDAEPKTKVRLVVPNGSCGGIIGKGGATIRSFIE 149
Query: 515 DSQASIKISPQDNNYNGLTDRLVTVTGSLEEQLRAIFLILAKLAEDSYYPHSMNAPFSYA 694
DSQA IKISPQDNNY G DRLVT+TGS +EQ+RAI LI++KL+ED +Y SMN+PFSY
Sbjct: 150 DSQAGIKISPQDNNYYGQNDRLVTLTGSFDEQMRAIELIVSKLSEDPHYAQSMNSPFSYP 209
Query: 695 GVNFS---SLPYGYMAPSVGILARNGRN------GSGGFQNNKEDRSNSVTIGVADEHXX 847
GV FS +PY Y+ PSV A N N G QN+KE+RSNS+T+GVADEH
Sbjct: 210 GVYFSGYQGVPYTYVLPSVAPPAYNAVNYRPNGAAGGKLQNSKEERSNSLTMGVADEHIG 269
Query: 848 XXXXXXXXNLMDINQTSGARIKISDRGDFISGTSERKVIITGSQAAIRTAENMIMQKVAY 1027
N+M+I+Q SGARIKISDRGD++SGT++RKV ITGSQ AIRTAE+MI+QKVAY
Sbjct: 270 LVVGRGGRNIMEISQASGARIKISDRGDYVSGTTDRKVTITGSQRAIRTAESMILQKVAY 329
Query: 1028 ATE 1036
ATE
Sbjct: 330 ATE 332
Score = 65.5 bits (158), Expect = 3e-08
Identities = 35/89 (39%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
Frame = +2
Query: 152 EDEN--EGPTQIRFLVSNGAAGSVIGKGGSTITEFQSLSGARIVLSRNNEFFPGTTDRIV 325
ED+N E T++R +V NG+ G +IGKGG+TI F S A I +S + + G DR+V
Sbjct: 113 EDDNDAEPKTKVRLVVPNGSCGGIIGKGGATIRSFIEDSQAGIKISPQDNNYYGQNDRLV 172
Query: 326 LVSGPFNDILHAVELILGKLVAEGNAEES 412
++G F++ + A+ELI+ KL + + +S
Sbjct: 173 TLTGSFDEQMRAIELIVSKLSEDPHYAQS 201
>ref|XP_003556300.1| PREDICTED: RNA-binding protein Nova-1-like [Glycine max]
Length = 337
Score = 352 bits (902), Expect = 2e-94
Identities = 188/303 (62%), Positives = 226/303 (74%), Gaps = 9/303 (2%)
Frame = +2
Query: 155 DENEGPTQIRFLVSNGAAGSVIGKGGSTITEFQSLSGARIVLSRNNEFFPGTTDRIVLVS 334
D E PT IRFLVSN AAGSVIGKGGSTIT+FQS SGARI LSRN+EFFPGTTDRI++VS
Sbjct: 30 DSEEKPTYIRFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNHEFFPGTTDRIIMVS 89
Query: 335 GPFNDILHAVELILGKLVAEGNAEESNEYDSRAKVRLIVPNSSCXXXXXXXXXXXXSFMK 514
G N+I AVELIL KL++E ++E+ N+ + + KVRL+VPN SC SF++
Sbjct: 90 GAINEIQRAVELILSKLLSELHSEDDNDAEPKTKVRLVVPNGSCGGIIGKGGVTIRSFIE 149
Query: 515 DSQASIKISPQDNNYNGLTDRLVTVTGSLEEQLRAIFLILAKLAEDSYYPHSMNAPFSYA 694
DSQA IKISPQDNNY G DRLV +TG+ +EQ+RAI LI++KLAED +Y SMN+PFSY
Sbjct: 150 DSQAGIKISPQDNNYYGQNDRLVMLTGTFDEQMRAIELIVSKLAEDPHYAQSMNSPFSYP 209
Query: 695 GVNFS---SLPYGYMAPSVGILARNGRN------GSGGFQNNKEDRSNSVTIGVADEHXX 847
GV FS +PY Y+ PSV A N N G QN+KE+RSNS+T+GVADEH
Sbjct: 210 GVYFSGYQGVPYTYVLPSVAPPAYNAVNYRPNGTAGGKLQNSKEERSNSLTMGVADEHIG 269
Query: 848 XXXXXXXXNLMDINQTSGARIKISDRGDFISGTSERKVIITGSQAAIRTAENMIMQKVAY 1027
N+M+I+Q SGARIKISDRGD+ISGT++RKV ITGSQ AIRTAE+MI+QKVAY
Sbjct: 270 LVVGRGGRNIMEISQVSGARIKISDRGDYISGTTDRKVTITGSQRAIRTAESMILQKVAY 329
Query: 1028 ATE 1036
ATE
Sbjct: 330 ATE 332
Score = 66.2 bits (160), Expect = 2e-08
Identities = 35/89 (39%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
Frame = +2
Query: 152 EDEN--EGPTQIRFLVSNGAAGSVIGKGGSTITEFQSLSGARIVLSRNNEFFPGTTDRIV 325
ED+N E T++R +V NG+ G +IGKGG TI F S A I +S + + G DR+V
Sbjct: 113 EDDNDAEPKTKVRLVVPNGSCGGIIGKGGVTIRSFIEDSQAGIKISPQDNNYYGQNDRLV 172
Query: 326 LVSGPFNDILHAVELILGKLVAEGNAEES 412
+++G F++ + A+ELI+ KL + + +S
Sbjct: 173 MLTGTFDEQMRAIELIVSKLAEDPHYAQS 201
>ref|XP_002264331.2| PREDICTED: RNA-binding protein Nova-1-like [Vitis vinifera]
Length = 309
Score = 346 bits (888), Expect = 7e-93
Identities = 191/295 (64%), Positives = 223/295 (75%), Gaps = 1/295 (0%)
Frame = +2
Query: 155 DENEGPTQIRFLVSNGAAGSVIGKGGSTITEFQSLSGARIVLSRNNEFFPGTTDRIVLVS 334
D E T IRFLVSN AAGSVIGKGGSTI +FQS SGARI LSRN+EFFPGT+DRI+++S
Sbjct: 28 DFMEKSTYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTSDRIIMIS 87
Query: 335 GPFNDILHAVELILGKLVAEGNAEESNEYDSRAKVRLIVPNSSCXXXXXXXXXXXXSFMK 514
G N+I+ A+ELIL KL++E + E+ +E D R+KVRLIVPNSSC SF++
Sbjct: 88 GATNEIIKAMELILAKLLSEMHTEDGDEADPRSKVRLIVPNSSCGGIIGKGGSTIKSFIE 147
Query: 515 DSQASIKISPQDNNYNGLTDRLVTVTGSLEEQLRAIFLILAKLAEDSYYPHSMNAPFSYA 694
DSQASIKISPQDNNY GLTDRLVT+ GSLEEQ+RAI LIL+KL ED +Y MNAPFSYA
Sbjct: 148 DSQASIKISPQDNNYLGLTDRLVTLMGSLEEQMRAIDLILSKLTEDPHYTQFMNAPFSYA 207
Query: 695 GVNFSSLPYGYMAPSVGILARNGRNGSGG-FQNNKEDRSNSVTIGVADEHXXXXXXXXXX 871
++S+ Y G NG+GG FQNNKEDRSNSVTIGVADEH
Sbjct: 208 AA-YNSMNY-------------GPNGAGGKFQNNKEDRSNSVTIGVADEHIGLVVGRGGR 253
Query: 872 NLMDINQTSGARIKISDRGDFISGTSERKVIITGSQAAIRTAENMIMQKVAYATE 1036
N+MDI+Q SGARIKISDRGDF+SGT++RKV ITGSQ AIR AE+MIMQKVA A+E
Sbjct: 254 NIMDISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESMIMQKVASASE 308
>emb|CBI31382.3| unnamed protein product [Vitis vinifera]
Length = 357
Score = 346 bits (888), Expect = 7e-93
Identities = 191/295 (64%), Positives = 223/295 (75%), Gaps = 1/295 (0%)
Frame = +2
Query: 155 DENEGPTQIRFLVSNGAAGSVIGKGGSTITEFQSLSGARIVLSRNNEFFPGTTDRIVLVS 334
D E T IRFLVSN AAGSVIGKGGSTI +FQS SGARI LSRN+EFFPGT+DRI+++S
Sbjct: 76 DFMEKSTYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTSDRIIMIS 135
Query: 335 GPFNDILHAVELILGKLVAEGNAEESNEYDSRAKVRLIVPNSSCXXXXXXXXXXXXSFMK 514
G N+I+ A+ELIL KL++E + E+ +E D R+KVRLIVPNSSC SF++
Sbjct: 136 GATNEIIKAMELILAKLLSEMHTEDGDEADPRSKVRLIVPNSSCGGIIGKGGSTIKSFIE 195
Query: 515 DSQASIKISPQDNNYNGLTDRLVTVTGSLEEQLRAIFLILAKLAEDSYYPHSMNAPFSYA 694
DSQASIKISPQDNNY GLTDRLVT+ GSLEEQ+RAI LIL+KL ED +Y MNAPFSYA
Sbjct: 196 DSQASIKISPQDNNYLGLTDRLVTLMGSLEEQMRAIDLILSKLTEDPHYTQFMNAPFSYA 255
Query: 695 GVNFSSLPYGYMAPSVGILARNGRNGSGG-FQNNKEDRSNSVTIGVADEHXXXXXXXXXX 871
++S+ Y G NG+GG FQNNKEDRSNSVTIGVADEH
Sbjct: 256 AA-YNSMNY-------------GPNGAGGKFQNNKEDRSNSVTIGVADEHIGLVVGRGGR 301
Query: 872 NLMDINQTSGARIKISDRGDFISGTSERKVIITGSQAAIRTAENMIMQKVAYATE 1036
N+MDI+Q SGARIKISDRGDF+SGT++RKV ITGSQ AIR AE+MIMQKVA A+E
Sbjct: 302 NIMDISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESMIMQKVASASE 356