BLASTX nr result
ID: Coptis25_contig00004380
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00004380
(637 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containi... 214 1e-53
emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera] 214 1e-53
ref|NP_179484.1| pentatricopeptide repeat-containing protein [Ar... 205 5e-51
ref|XP_002329666.1| predicted protein [Populus trichocarpa] gi|2... 204 1e-50
ref|XP_002884184.1| pentatricopeptide repeat-containing protein ... 203 2e-50
>ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
[Vitis vinifera] gi|297735424|emb|CBI17864.3| unnamed
protein product [Vitis vinifera]
Length = 821
Score = 214 bits (544), Expect = 1e-53
Identities = 104/138 (75%), Positives = 118/138 (85%)
Frame = +2
Query: 2 KAEEILKGLQKAKLKPDLVSYNTVIKGFCRQGLMQEALRTMSEMIAMGIRPCIFTYNTFV 181
K EEILKG+QK+ KPDLVSYNTVIKGFCRQGLMQEA+RT+SEM GIRPCI TYNTFV
Sbjct: 683 KGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFV 742
Query: 182 AGYACKGMFVDVHDVISYMMQRKCRPNELTYKIVVDGHCKEQKYKEAMDYVSKIRETDPS 361
AGY+ KGMF +V +VISYM+Q CRPNELTYKIVVDG+CK +KYKEAMD+VS I E D S
Sbjct: 743 AGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKEAMDFVSNITEMDKS 802
Query: 362 FDDQSVRRLAAGVRENME 415
FDDQS+RRL +RE+ME
Sbjct: 803 FDDQSLRRLTFRIREHME 820
Score = 60.5 bits (145), Expect = 3e-07
Identities = 34/115 (29%), Positives = 53/115 (46%)
Frame = +2
Query: 2 KAEEILKGLQKAKLKPDLVSYNTVIKGFCRQGLMQEALRTMSEMIAMGIRPCIFTYNTFV 181
+A ILK ++K PDLV+YN ++ + R G +E + MI GI P TY T +
Sbjct: 333 EALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVI 392
Query: 182 AGYACKGMFVDVHDVISYMMQRKCRPNELTYKIVVDGHCKEQKYKEAMDYVSKIR 346
Y G M + C PN TY ++ K+ + +E +D + +R
Sbjct: 393 NAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMR 447
Score = 58.2 bits (139), Expect = 1e-06
Identities = 29/98 (29%), Positives = 53/98 (54%)
Frame = +2
Query: 59 SYNTVIKGFCRQGLMQEALRTMSEMIAMGIRPCIFTYNTFVAGYACKGMFVDVHDVISYM 238
+YN++++ F + G+ EAL + EM P + TYN VA Y G + D I M
Sbjct: 317 TYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTM 376
Query: 239 MQRKCRPNELTYKIVVDGHCKEQKYKEAMDYVSKIRET 352
+++ PN +TY V++ + K K +A+ + +++E+
Sbjct: 377 IRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKES 414
>emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
Length = 821
Score = 214 bits (544), Expect = 1e-53
Identities = 104/138 (75%), Positives = 118/138 (85%)
Frame = +2
Query: 2 KAEEILKGLQKAKLKPDLVSYNTVIKGFCRQGLMQEALRTMSEMIAMGIRPCIFTYNTFV 181
K EEILKG+QK+ KPDLVSYNTVIKGFCRQGLMQEA+RT+SEM GIRPCI TYNTFV
Sbjct: 683 KGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFV 742
Query: 182 AGYACKGMFVDVHDVISYMMQRKCRPNELTYKIVVDGHCKEQKYKEAMDYVSKIRETDPS 361
AGY+ KGMF +V +VISYM+Q CRPNELTYKIVVDG+CK +KYKEAMD+VS I E D S
Sbjct: 743 AGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKEAMDFVSNITEMDKS 802
Query: 362 FDDQSVRRLAAGVRENME 415
FDDQS+RRL +RE+ME
Sbjct: 803 FDDQSLRRLTFRIREHME 820
Score = 60.5 bits (145), Expect = 3e-07
Identities = 34/115 (29%), Positives = 53/115 (46%)
Frame = +2
Query: 2 KAEEILKGLQKAKLKPDLVSYNTVIKGFCRQGLMQEALRTMSEMIAMGIRPCIFTYNTFV 181
+A ILK ++K PDLV+YN ++ + R G +E + MI GI P TY T +
Sbjct: 333 EALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVI 392
Query: 182 AGYACKGMFVDVHDVISYMMQRKCRPNELTYKIVVDGHCKEQKYKEAMDYVSKIR 346
Y G M + C PN TY ++ K+ + +E +D + +R
Sbjct: 393 NAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMR 447
Score = 58.2 bits (139), Expect = 1e-06
Identities = 29/98 (29%), Positives = 53/98 (54%)
Frame = +2
Query: 59 SYNTVIKGFCRQGLMQEALRTMSEMIAMGIRPCIFTYNTFVAGYACKGMFVDVHDVISYM 238
+YN++++ F + G+ EAL + EM P + TYN VA Y G + D I M
Sbjct: 317 TYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTM 376
Query: 239 MQRKCRPNELTYKIVVDGHCKEQKYKEAMDYVSKIRET 352
+++ PN +TY V++ + K K +A+ + +++E+
Sbjct: 377 IRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKES 414
>ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099137|sp|O64624.1|PP163_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At2g18940 gi|3004555|gb|AAC09028.1| putative
salt-inducible protein [Arabidopsis thaliana]
gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14
[Arabidopsis thaliana] gi|38564280|gb|AAR23719.1|
At2g18940/F19F24.14 [Arabidopsis thaliana]
gi|330251736|gb|AEC06830.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 822
Score = 205 bits (522), Expect = 5e-51
Identities = 97/139 (69%), Positives = 116/139 (83%)
Frame = +2
Query: 2 KAEEILKGLQKAKLKPDLVSYNTVIKGFCRQGLMQEALRTMSEMIAMGIRPCIFTYNTFV 181
KAEEILK L+K++LKPDLVSYNTVIKGFCR+GLMQEA+R +SEM GIRPCIFTYNTFV
Sbjct: 684 KAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFV 743
Query: 182 AGYACKGMFVDVHDVISYMMQRKCRPNELTYKIVVDGHCKEQKYKEAMDYVSKIRETDPS 361
+GY GMF ++ DVI M + CRPNELT+K+VVDG+C+ KY EAMD+VSKI+ DP
Sbjct: 744 SGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIKTFDPC 803
Query: 362 FDDQSVRRLAAGVRENMES 418
FDDQS++RLA VREN+ES
Sbjct: 804 FDDQSIQRLALRVRENLES 822
Score = 60.5 bits (145), Expect = 3e-07
Identities = 35/116 (30%), Positives = 55/116 (47%)
Frame = +2
Query: 2 KAEEILKGLQKAKLKPDLVSYNTVIKGFCRQGLMQEALRTMSEMIAMGIRPCIFTYNTFV 181
+A+E L+ +P V+YN +++ F + G+ EAL + EM TYN V
Sbjct: 299 EAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELV 358
Query: 182 AGYACKGMFVDVHDVISYMMQRKCRPNELTYKIVVDGHCKEQKYKEAMDYVSKIRE 349
A Y G + VI M ++ PN +TY V+D + K K EA+ ++E
Sbjct: 359 AAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKE 414
>ref|XP_002329666.1| predicted protein [Populus trichocarpa] gi|222870547|gb|EEF07678.1|
predicted protein [Populus trichocarpa]
Length = 821
Score = 204 bits (518), Expect = 1e-50
Identities = 98/139 (70%), Positives = 117/139 (84%)
Frame = +2
Query: 2 KAEEILKGLQKAKLKPDLVSYNTVIKGFCRQGLMQEALRTMSEMIAMGIRPCIFTYNTFV 181
KAEEIL+ LQ + K DL+SYNTVIKGFCRQGLM EALRT+SEMI+ GIRPCI TYNTFV
Sbjct: 683 KAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRGIRPCIVTYNTFV 742
Query: 182 AGYACKGMFVDVHDVISYMMQRKCRPNELTYKIVVDGHCKEQKYKEAMDYVSKIRETDPS 361
GYA KGMF ++ +V+SYM + CRPNELTYKIVVDG+CK +K+KEAMD+VS I + D S
Sbjct: 743 GGYAAKGMFAEIDEVLSYMTKHDCRPNELTYKIVVDGYCKAKKFKEAMDFVSTITDIDDS 802
Query: 362 FDDQSVRRLAAGVRENMES 418
FD QS+RRL++ VRENM+S
Sbjct: 803 FDYQSMRRLSSRVRENMQS 821
Score = 61.2 bits (147), Expect = 2e-07
Identities = 32/117 (27%), Positives = 59/117 (50%)
Frame = +2
Query: 2 KAEEILKGLQKAKLKPDLVSYNTVIKGFCRQGLMQEALRTMSEMIAMGIRPCIFTYNTFV 181
+A+E GL+ P V+YN +++ F + G+ EAL M EM P TYN V
Sbjct: 298 EAKEFFVGLKSQGYAPGTVTYNALLQVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNELV 357
Query: 182 AGYACKGMFVDVHDVISYMMQRKCRPNELTYKIVVDGHCKEQKYKEAMDYVSKIRET 352
A Y G + + +I M + +PN +TY +++ + + + +A+ +++E+
Sbjct: 358 AAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKES 414
>ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297330024|gb|EFH60443.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 829
Score = 203 bits (516), Expect = 2e-50
Identities = 96/139 (69%), Positives = 116/139 (83%)
Frame = +2
Query: 2 KAEEILKGLQKAKLKPDLVSYNTVIKGFCRQGLMQEALRTMSEMIAMGIRPCIFTYNTFV 181
KAEEILK L+K++LKPDLVSYNTVIKGFCR+GLMQEA+R +SEM GIRPCIFTYNTFV
Sbjct: 691 KAEEILKTLEKSQLKPDLVSYNTVIKGFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFV 750
Query: 182 AGYACKGMFVDVHDVISYMMQRKCRPNELTYKIVVDGHCKEQKYKEAMDYVSKIRETDPS 361
+GY GM+ ++ DVI M + CRPNELT+K+VVDG+C+ KY EAMD+VSKI+ DP
Sbjct: 751 SGYTAMGMYGEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIKTFDPC 810
Query: 362 FDDQSVRRLAAGVRENMES 418
FDDQS++RLA VREN+ES
Sbjct: 811 FDDQSIQRLALRVRENLES 829
Score = 61.6 bits (148), Expect = 1e-07
Identities = 36/116 (31%), Positives = 56/116 (48%)
Frame = +2
Query: 2 KAEEILKGLQKAKLKPDLVSYNTVIKGFCRQGLMQEALRTMSEMIAMGIRPCIFTYNTFV 181
+A++ L+ +P V+YN +++ F + G+ EAL + EM TYN V
Sbjct: 306 EAKDFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELV 365
Query: 182 AGYACKGMFVDVHDVISYMMQRKCRPNELTYKIVVDGHCKEQKYKEAMDYVSKIRE 349
A YA G + VI M Q+ PN +TY V+D + K K EA+ ++E
Sbjct: 366 AAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKE 421