BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00004369
         (1112 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABK95696.1| unknown [Populus trichocarpa]                          374   e-101
ref|XP_002308316.1| predicted protein [Populus trichocarpa] gi|2...   372   e-100
ref|XP_002284711.1| PREDICTED: sigma factor sigB regulation prot...   367   3e-99
ref|XP_002284715.1| PREDICTED: sigma factor sigB regulation prot...   360   3e-97
ref|XP_002515580.1| sigma factor sigb regulation protein rsbq, p...   358   1e-96

>gb|ABK95696.1| unknown [Populus trichocarpa]
          Length = 278

 Score =  374 bits (959), Expect = e-101
 Identities = 180/269 (66%), Positives = 216/269 (80%)
 Frame = +3

Query: 120 MVVQDTSLKASMNARIIGSGDDTVILAHGFGGDQSIWDKTVSCLAQQYSVMVFDWNFSGA 299
           MVV +  L  ++NAR+ GSG++ +ILAHGFGGDQS+WDK V  LA+   V+VFDW FSGA
Sbjct: 1   MVVPEKGLSGALNARVTGSGNEAIILAHGFGGDQSVWDKIVPRLAKHCRVLVFDWIFSGA 60

Query: 300 TNDPSMFDPVKYSSYDAFAKDLIALLDEMNLSSSVFIGHSMSGMIGCLASIKRPDLFKRL 479
             DP++FDPVKYSSYDAFA DLI+L+DE++L SSV +GHSMSGMIGC+ASIKRPDLFK+L
Sbjct: 61  IKDPNLFDPVKYSSYDAFANDLISLMDELDLKSSVLVGHSMSGMIGCIASIKRPDLFKKL 120

Query: 480 VLIGASPRYLNSEDYEGGFEKPQIEEIFLNIESNFQMWATNFASLVVDAKDPPSVEQFSK 659
           +L+GASPRY+N++DYEGGF   ++E+I  NIESN+  WA  FAS VVDA DPPSV+ FSK
Sbjct: 121 ILVGASPRYINADDYEGGFSNSEVEDIISNIESNYYNWAQAFASAVVDANDPPSVDMFSK 180

Query: 660 SLGRMRPEVALSLAKTVFCSDVLGSLDKVQVPCTIIQTSNDIVVPNSVAYYMQKKINGKS 839
            L RMRPE A+ +AKTVF  D    L+KV  PC I+QT+ DIVVPNSVAYYMQ+KI GKS
Sbjct: 181 CLQRMRPEFAVPVAKTVFYCDERDILEKVLTPCIIVQTTRDIVVPNSVAYYMQEKIKGKS 240

Query: 840 TVEIIEADGHFPQLTKTKQLLDVLYRVMS 926
           TVEIIE DGHFP LT  +QLLDVL   MS
Sbjct: 241 TVEIIETDGHFPHLTAHQQLLDVLIAAMS 269


>ref|XP_002308316.1| predicted protein [Populus trichocarpa] gi|222854292|gb|EEE91839.1|
           predicted protein [Populus trichocarpa]
          Length = 264

 Score =  372 bits (954), Expect = e-100
 Identities = 178/264 (67%), Positives = 215/264 (81%)
 Frame = +3

Query: 120 MVVQDTSLKASMNARIIGSGDDTVILAHGFGGDQSIWDKTVSCLAQQYSVMVFDWNFSGA 299
           MVV +  L  ++NAR+ GSG++ +ILAHGFGGDQS+WDK V  LA+   V+VFDW FSGA
Sbjct: 1   MVVPEKGLSGALNARVTGSGNEAIILAHGFGGDQSVWDKIVPRLAKHCRVLVFDWIFSGA 60

Query: 300 TNDPSMFDPVKYSSYDAFAKDLIALLDEMNLSSSVFIGHSMSGMIGCLASIKRPDLFKRL 479
             DP++FDPVKYSSYDAFA DLI+L+DE++L SSV +GHSMSGMIGC+ASIKRPDLFK+L
Sbjct: 61  IKDPNLFDPVKYSSYDAFANDLISLMDELDLKSSVLVGHSMSGMIGCIASIKRPDLFKKL 120

Query: 480 VLIGASPRYLNSEDYEGGFEKPQIEEIFLNIESNFQMWATNFASLVVDAKDPPSVEQFSK 659
           +L+GASPRY+N++DYEGGF   ++E+I  NIESN+  WA  FAS+VVDA DPPSV+ FSK
Sbjct: 121 ILVGASPRYINADDYEGGFSNSEVEDIISNIESNYYNWAQAFASVVVDANDPPSVDMFSK 180

Query: 660 SLGRMRPEVALSLAKTVFCSDVLGSLDKVQVPCTIIQTSNDIVVPNSVAYYMQKKINGKS 839
            L RMRPE A+ +AKTVF  D    L+KV  PC I+QT+ DIVVPNSVAYYMQ+KI GKS
Sbjct: 181 CLQRMRPEFAVPVAKTVFYCDERDILEKVLTPCIIVQTTRDIVVPNSVAYYMQEKIKGKS 240

Query: 840 TVEIIEADGHFPQLTKTKQLLDVL 911
           TVEIIE DGHFP LT  +QLLDVL
Sbjct: 241 TVEIIETDGHFPHLTAHQQLLDVL 264


>ref|XP_002284711.1| PREDICTED: sigma factor sigB regulation protein rsbQ isoform 1
           [Vitis vinifera] gi|297738861|emb|CBI28106.3| unnamed
           protein product [Vitis vinifera]
          Length = 277

 Score =  367 bits (942), Expect = 3e-99
 Identities = 180/268 (67%), Positives = 212/268 (79%)
 Frame = +3

Query: 120 MVVQDTSLKASMNARIIGSGDDTVILAHGFGGDQSIWDKTVSCLAQQYSVMVFDWNFSGA 299
           M+V +  L A+MNAR+IG G++ ++LAHGFGGDQS+WDK    LA+ Y V+VFDWNFSGA
Sbjct: 1   MLVIEKGLSAAMNARMIGFGNEAIVLAHGFGGDQSLWDKITPHLARSYRVLVFDWNFSGA 60

Query: 300 TNDPSMFDPVKYSSYDAFAKDLIALLDEMNLSSSVFIGHSMSGMIGCLASIKRPDLFKRL 479
             DPS++D  KYSSYDAFA DLIALLDE  L +SVF+GHSMSGMIGC+ASIKRP+LFKRL
Sbjct: 61  VKDPSLYDSTKYSSYDAFADDLIALLDEFKLLASVFVGHSMSGMIGCIASIKRPELFKRL 120

Query: 480 VLIGASPRYLNSEDYEGGFEKPQIEEIFLNIESNFQMWATNFASLVVDAKDPPSVEQFSK 659
           + I ASPRYLN+ +YEGGFE+ +IE+IF NIES+F  WA+NFA L VD  DP SVE+  K
Sbjct: 121 IFIAASPRYLNANNYEGGFERSEIEQIFANIESDFDKWASNFAPLAVDVNDPLSVEKVEK 180

Query: 660 SLGRMRPEVALSLAKTVFCSDVLGSLDKVQVPCTIIQTSNDIVVPNSVAYYMQKKINGKS 839
            + RMRPEVAL LAKTVFC D    LDKV  PCTI+Q +NDIV P SVA YMQKKI GK+
Sbjct: 181 CIRRMRPEVALPLAKTVFCCDHRDILDKVTTPCTIVQPTNDIVAPISVAEYMQKKIKGKT 240

Query: 840 TVEIIEADGHFPQLTKTKQLLDVLYRVM 923
           TVEII+ DGHFPQLT   QLL VL  V+
Sbjct: 241 TVEIIDMDGHFPQLTAHLQLLSVLDSVL 268


>ref|XP_002284715.1| PREDICTED: sigma factor sigB regulation protein rsbQ isoform 2
           [Vitis vinifera]
          Length = 269

 Score =  360 bits (925), Expect = 3e-97
 Identities = 176/257 (68%), Positives = 205/257 (79%)
 Frame = +3

Query: 153 MNARIIGSGDDTVILAHGFGGDQSIWDKTVSCLAQQYSVMVFDWNFSGATNDPSMFDPVK 332
           MNAR+IG G++ ++LAHGFGGDQS+WDK    LA+ Y V+VFDWNFSGA  DPS++D  K
Sbjct: 4   MNARMIGFGNEAIVLAHGFGGDQSLWDKITPHLARSYRVLVFDWNFSGAVKDPSLYDSTK 63

Query: 333 YSSYDAFAKDLIALLDEMNLSSSVFIGHSMSGMIGCLASIKRPDLFKRLVLIGASPRYLN 512
           YSSYDAFA DLIALLDE  L +SVF+GHSMSGMIGC+ASIKRP+LFKRL+ I ASPRYLN
Sbjct: 64  YSSYDAFADDLIALLDEFKLLASVFVGHSMSGMIGCIASIKRPELFKRLIFIAASPRYLN 123

Query: 513 SEDYEGGFEKPQIEEIFLNIESNFQMWATNFASLVVDAKDPPSVEQFSKSLGRMRPEVAL 692
           + +YEGGFE+ +IE+IF NIES+F  WA+NFA L VD  DP SVE+  K + RMRPEVAL
Sbjct: 124 ANNYEGGFERSEIEQIFANIESDFDKWASNFAPLAVDVNDPLSVEKVEKCIRRMRPEVAL 183

Query: 693 SLAKTVFCSDVLGSLDKVQVPCTIIQTSNDIVVPNSVAYYMQKKINGKSTVEIIEADGHF 872
            LAKTVFC D    LDKV  PCTI+Q +NDIV P SVA YMQKKI GK+TVEII+ DGHF
Sbjct: 184 PLAKTVFCCDHRDILDKVTTPCTIVQPTNDIVAPISVAEYMQKKIKGKTTVEIIDMDGHF 243

Query: 873 PQLTKTKQLLDVLYRVM 923
           PQLT   QLL VL  V+
Sbjct: 244 PQLTAHLQLLSVLDSVL 260


>ref|XP_002515580.1| sigma factor sigb regulation protein rsbq, putative [Ricinus
           communis] gi|223545524|gb|EEF47029.1| sigma factor sigb
           regulation protein rsbq, putative [Ricinus communis]
          Length = 276

 Score =  358 bits (919), Expect = 1e-96
 Identities = 175/272 (64%), Positives = 217/272 (79%), Gaps = 4/272 (1%)
 Frame = +3

Query: 120 MVVQDTSLKASMNARIIGSGDDTVILAHGFGGDQSIWDKTVSCLAQQYSVMVFDWNFSGA 299
           MV+ +T L  +MNA++IG+G++T++LAHG+GGDQS WDK V  LA+ + ++VFDW FSGA
Sbjct: 1   MVMLETGLSTAMNAKVIGTGEETIVLAHGYGGDQSAWDKIVPDLAKYFRILVFDWLFSGA 60

Query: 300 TNDPSMFDPVKYSSYDAFAKDLIALLDEMNLSSS--VFIGHSMSGMIGCLASIKRPDLFK 473
             D  +FDP KY+S+DAFA DLI LL+EM+L SS  VF+GHSMSGMIGC+ASIKRP+LFK
Sbjct: 61  VKDQQLFDPEKYASFDAFADDLICLLEEMSLISSPVVFVGHSMSGMIGCIASIKRPELFK 120

Query: 474 RLVLIGASPRYLNSEDYEGGFEKPQIEEIFLNIESNFQMWATNFASLVVDAKD--PPSVE 647
           RL+L+GASPRY+N +DYEGGF+K  +++I  NIESNFQ W   FASLVV AKD  P SVE
Sbjct: 121 RLILVGASPRYINIDDYEGGFKKTDVDDIISNIESNFQNWTPGFASLVVGAKDKDPDSVE 180

Query: 648 QFSKSLGRMRPEVALSLAKTVFCSDVLGSLDKVQVPCTIIQTSNDIVVPNSVAYYMQKKI 827
           QF+K L  M+PE ALS+AKTVF SD    LDKV  PCTI+QT+ D+VVPNSV YYMQ+KI
Sbjct: 181 QFTKCLSNMKPEHALSVAKTVFYSDEREILDKVSTPCTIVQTTGDLVVPNSVVYYMQEKI 240

Query: 828 NGKSTVEIIEADGHFPQLTKTKQLLDVLYRVM 923
            GKS+VE I+ DGHFP LT  +QLLDVL  V+
Sbjct: 241 KGKSSVEFIDTDGHFPHLTAHQQLLDVLTAVL 272