BLASTX nr result
ID: Coptis25_contig00004351
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00004351
(1786 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN60235.1| hypothetical protein VITISV_028850 [Vitis vinifera] 621 e-175
emb|CBI31778.3| unnamed protein product [Vitis vinifera] 620 e-175
ref|XP_002284103.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 620 e-175
ref|XP_003545384.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 595 e-167
ref|XP_003518490.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 592 e-167
>emb|CAN60235.1| hypothetical protein VITISV_028850 [Vitis vinifera]
Length = 666
Score = 621 bits (1601), Expect = e-175
Identities = 332/495 (67%), Positives = 385/495 (77%), Gaps = 16/495 (3%)
Frame = +1
Query: 154 MNRLFKKSATSLISSKQTLTALISIDV------FRAFSSVTPSKSFNSHSDFALTKKKNI 315
M + + ++SL S K + AL S+ F ++ S S + +T I
Sbjct: 1 MMNIISRKSSSLASVKAPIRALASVPHVHSLLHFHIHPPISTSASDAVVARNVVTSAAPI 60
Query: 316 PSPSN--GFSGIRGIHF--SSGPLGYKA------EARFDDFSDEEKTLKGSGGDEGLEIS 465
P S GFSG R +F SGPL ++A E DFSDEEK+ KG GDEGLEIS
Sbjct: 61 PPLSGLLGFSGFRVRNFRSQSGPLDFRASVVSRAEYAVADFSDEEKSSKG--GDEGLEIS 118
Query: 466 KLGIDQSMVNALAGKGITKLFPIQKAVLDPAMQGRDMIGRARTGTGKTLAFGIPILDKIT 645
KLGI Q +V+ALA KGITKLFPIQ+AVL+PAMQGRDMIGRARTGTGKTLAFGIPI+DK+
Sbjct: 119 KLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKVI 178
Query: 646 SFNNAHGKGRNPLAIVLAPTRELAKQVDKEFRECAPHLDALCCYGGVPKYTQTQQLNYGV 825
+N HG+GRNPLA+VLAPTRELA+QV+KEF E AP+LD LC YGG P Q L+YGV
Sbjct: 179 QYNAKHGRGRNPLALVLAPTRELARQVEKEFXESAPNLDTLCVYGGTPISRQMNSLDYGV 238
Query: 826 DVVVGTPGRIIDLCETRALDLSEVQFAVLDEADQMLAVGFEEDVEKILQKLPQKRQTMMF 1005
DVVVGTPGRIIDL + AL+LSEVQF VLDEADQMLAVGFEEDVE IL+KLPQ RQ+MMF
Sbjct: 239 DVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSMMF 298
Query: 1006 SATMPQWIRQLSRKYLRDALIIDLVGDSDKKLAEGISLYAIQADKFGKAGILGSLIKDHA 1185
SATMP WIR+L++KYL++ L IDLVGDSD+KLAEGISLY+I ++ + KA I+G LI +HA
Sbjct: 299 SATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGPLITEHA 358
Query: 1186 KGGKCIVFTQTKRDADRLSYALQRSLNCEPLHGDISQGQREKTLSGFRDGRFNVLVATDV 1365
KGGKCIVFTQTKRDADRL+YA+ R+ CE LHGDISQ QRE+TLSGFRDG FNVLVATDV
Sbjct: 359 KGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDV 418
Query: 1366 AARGLDVPNVDLIIHYDSPSSSEIFVHRSGRTGRAGKKGTAILIYTDDQIRIVRGIEKDV 1545
AARGLD+PNVDLIIHY+ P+SSEIFVHRSGRTGRAGKKGTAILIY + Q R VR IE+D+
Sbjct: 419 AARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQARTVRFIERDI 478
Query: 1546 GSKFSELPRIAAEPG 1590
G KFSELPRIA E G
Sbjct: 479 GCKFSELPRIAIEGG 493
>emb|CBI31778.3| unnamed protein product [Vitis vinifera]
Length = 568
Score = 620 bits (1599), Expect = e-175
Identities = 332/495 (67%), Positives = 385/495 (77%), Gaps = 16/495 (3%)
Frame = +1
Query: 154 MNRLFKKSATSLISSKQTLTALISIDV------FRAFSSVTPSKSFNSHSDFALTKKKNI 315
M + + ++SL S K + AL S+ F ++ S S + +T I
Sbjct: 1 MMNIISRKSSSLASVKAPIRALASVPHVHSLLHFHIHPPISTSASDAVVARNVVTSAAPI 60
Query: 316 PSPSN--GFSGIRGIHF--SSGPLGYKA------EARFDDFSDEEKTLKGSGGDEGLEIS 465
P S GFSG R +F SGPL ++A E DFSDEEK+ KG GDEGLEIS
Sbjct: 61 PPLSGLLGFSGFRVRNFRSQSGPLDFRASVVSRAEYAVADFSDEEKSSKG--GDEGLEIS 118
Query: 466 KLGIDQSMVNALAGKGITKLFPIQKAVLDPAMQGRDMIGRARTGTGKTLAFGIPILDKIT 645
KLGI Q +V+ALA KGITKLFPIQ+AVL+PAMQGRDMIGRARTGTGKTLAFGIPI+DK+
Sbjct: 119 KLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKVI 178
Query: 646 SFNNAHGKGRNPLAIVLAPTRELAKQVDKEFRECAPHLDALCCYGGVPKYTQTQQLNYGV 825
+N HG+GRNPLA+VLAPTRELA+QV+KEF E AP+LD LC YGG P Q L+YGV
Sbjct: 179 QYNAKHGRGRNPLALVLAPTRELARQVEKEFCESAPNLDTLCVYGGTPISRQMNSLDYGV 238
Query: 826 DVVVGTPGRIIDLCETRALDLSEVQFAVLDEADQMLAVGFEEDVEKILQKLPQKRQTMMF 1005
DVVVGTPGRIIDL + AL+LSEVQF VLDEADQMLAVGFEEDVE IL+KLPQ RQ+MMF
Sbjct: 239 DVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSMMF 298
Query: 1006 SATMPQWIRQLSRKYLRDALIIDLVGDSDKKLAEGISLYAIQADKFGKAGILGSLIKDHA 1185
SATMP WIR+L++KYL++ L IDLVGDSD+KLAEGISLY+I ++ + KA I+G LI +HA
Sbjct: 299 SATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGPLITEHA 358
Query: 1186 KGGKCIVFTQTKRDADRLSYALQRSLNCEPLHGDISQGQREKTLSGFRDGRFNVLVATDV 1365
KGGKCIVFTQTKRDADRL+YA+ R+ CE LHGDISQ QRE+TLSGFRDG FNVLVATDV
Sbjct: 359 KGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDV 418
Query: 1366 AARGLDVPNVDLIIHYDSPSSSEIFVHRSGRTGRAGKKGTAILIYTDDQIRIVRGIEKDV 1545
AARGLD+PNVDLIIHY+ P+SSEIFVHRSGRTGRAGKKGTAILIY + Q R VR IE+D+
Sbjct: 419 AARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQARTVRFIERDI 478
Query: 1546 GSKFSELPRIAAEPG 1590
G KFSELPRIA E G
Sbjct: 479 GCKFSELPRIAIEGG 493
>ref|XP_002284103.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Vitis
vinifera]
Length = 666
Score = 620 bits (1599), Expect = e-175
Identities = 332/495 (67%), Positives = 385/495 (77%), Gaps = 16/495 (3%)
Frame = +1
Query: 154 MNRLFKKSATSLISSKQTLTALISIDV------FRAFSSVTPSKSFNSHSDFALTKKKNI 315
M + + ++SL S K + AL S+ F ++ S S + +T I
Sbjct: 1 MMNIISRKSSSLASVKAPIRALASVPHVHSLLHFHIHPPISTSASDAVVARNVVTSAAPI 60
Query: 316 PSPSN--GFSGIRGIHF--SSGPLGYKA------EARFDDFSDEEKTLKGSGGDEGLEIS 465
P S GFSG R +F SGPL ++A E DFSDEEK+ KG GDEGLEIS
Sbjct: 61 PPLSGLLGFSGFRVRNFRSQSGPLDFRASVVSRAEYAVADFSDEEKSSKG--GDEGLEIS 118
Query: 466 KLGIDQSMVNALAGKGITKLFPIQKAVLDPAMQGRDMIGRARTGTGKTLAFGIPILDKIT 645
KLGI Q +V+ALA KGITKLFPIQ+AVL+PAMQGRDMIGRARTGTGKTLAFGIPI+DK+
Sbjct: 119 KLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKVI 178
Query: 646 SFNNAHGKGRNPLAIVLAPTRELAKQVDKEFRECAPHLDALCCYGGVPKYTQTQQLNYGV 825
+N HG+GRNPLA+VLAPTRELA+QV+KEF E AP+LD LC YGG P Q L+YGV
Sbjct: 179 QYNAKHGRGRNPLALVLAPTRELARQVEKEFCESAPNLDTLCVYGGTPISRQMNSLDYGV 238
Query: 826 DVVVGTPGRIIDLCETRALDLSEVQFAVLDEADQMLAVGFEEDVEKILQKLPQKRQTMMF 1005
DVVVGTPGRIIDL + AL+LSEVQF VLDEADQMLAVGFEEDVE IL+KLPQ RQ+MMF
Sbjct: 239 DVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSMMF 298
Query: 1006 SATMPQWIRQLSRKYLRDALIIDLVGDSDKKLAEGISLYAIQADKFGKAGILGSLIKDHA 1185
SATMP WIR+L++KYL++ L IDLVGDSD+KLAEGISLY+I ++ + KA I+G LI +HA
Sbjct: 299 SATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGPLITEHA 358
Query: 1186 KGGKCIVFTQTKRDADRLSYALQRSLNCEPLHGDISQGQREKTLSGFRDGRFNVLVATDV 1365
KGGKCIVFTQTKRDADRL+YA+ R+ CE LHGDISQ QRE+TLSGFRDG FNVLVATDV
Sbjct: 359 KGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDV 418
Query: 1366 AARGLDVPNVDLIIHYDSPSSSEIFVHRSGRTGRAGKKGTAILIYTDDQIRIVRGIEKDV 1545
AARGLD+PNVDLIIHY+ P+SSEIFVHRSGRTGRAGKKGTAILIY + Q R VR IE+D+
Sbjct: 419 AARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQARTVRFIERDI 478
Query: 1546 GSKFSELPRIAAEPG 1590
G KFSELPRIA E G
Sbjct: 479 GCKFSELPRIAIEGG 493
>ref|XP_003545384.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine max]
Length = 610
Score = 595 bits (1534), Expect = e-167
Identities = 305/457 (66%), Positives = 363/457 (79%), Gaps = 6/457 (1%)
Frame = +1
Query: 232 VFRAFSSVTPSKSFNSHSDFALTKKKNIPSPSNGFSGIRGIHFSSGPLGYK------AEA 393
+ R S + F + A T + PS F R H ++GPL ++ AE
Sbjct: 5 ILRRTCSTLSRRGFPAALISASTAGNHFRPPSAAFIS-RTFHSNTGPLNFRSSSCHRAEY 63
Query: 394 RFDDFSDEEKTLKGSGGDEGLEISKLGIDQSMVNALAGKGITKLFPIQKAVLDPAMQGRD 573
DDF EE + KG+ DEGLEI+KLGI + +V+ALA KGITKLFPIQ+AVL+PAMQGRD
Sbjct: 64 AVDDFPYEEGS-KGNAADEGLEIAKLGISEDIVSALAKKGITKLFPIQRAVLEPAMQGRD 122
Query: 574 MIGRARTGTGKTLAFGIPILDKITSFNNAHGKGRNPLAIVLAPTRELAKQVDKEFRECAP 753
MIGRARTGTGKTLAFGIPI+DKI FN HG+GR+PLA+VLAPTRELA+QV+ EF E AP
Sbjct: 123 MIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGRDPLALVLAPTRELARQVETEFCESAP 182
Query: 754 HLDALCCYGGVPKYTQTQQLNYGVDVVVGTPGRIIDLCETRALDLSEVQFAVLDEADQML 933
+LD +C YGG P Q ++L+YGVD+ VGTPGRIIDL AL+L +VQF VLDEADQML
Sbjct: 183 NLDTICVYGGTPISRQMRELDYGVDIAVGTPGRIIDLLNRGALNLKDVQFVVLDEADQML 242
Query: 934 AVGFEEDVEKILQKLPQKRQTMMFSATMPQWIRQLSRKYLRDALIIDLVGDSDKKLAEGI 1113
VGF+EDVEKIL++LP KRQT+MFSATMP WI+Q+SR YL + L IDLVGDSD+KLA+GI
Sbjct: 243 QVGFQEDVEKILERLPPKRQTLMFSATMPSWIKQISRNYLNNPLTIDLVGDSDQKLADGI 302
Query: 1114 SLYAIQADKFGKAGILGSLIKDHAKGGKCIVFTQTKRDADRLSYALQRSLNCEPLHGDIS 1293
SLY+I D + KAGIL LI +HAKGGKCIVFTQTKRDADRLSY + RS+ CE LHGDIS
Sbjct: 303 SLYSIATDLYVKAGILAPLITEHAKGGKCIVFTQTKRDADRLSYTMARSVKCEALHGDIS 362
Query: 1294 QGQREKTLSGFRDGRFNVLVATDVAARGLDVPNVDLIIHYDSPSSSEIFVHRSGRTGRAG 1473
Q QREKTL+GFR+G FNVLVATDVA+RGLD+PNVDL+IHYD P++SEIFVHRSGRTGRAG
Sbjct: 363 QAQREKTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYDLPNNSEIFVHRSGRTGRAG 422
Query: 1474 KKGTAILIYTDDQIRIVRGIEKDVGSKFSELPRIAAE 1584
KKGTAIL+YT+DQ R V+ IE+DVGS+F+ELPRIA +
Sbjct: 423 KKGTAILVYTEDQSRAVKLIERDVGSRFTELPRIAVD 459
>ref|XP_003518490.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine max]
Length = 595
Score = 592 bits (1527), Expect = e-167
Identities = 300/419 (71%), Positives = 351/419 (83%), Gaps = 6/419 (1%)
Frame = +1
Query: 346 RGIHFSSGPLGYKA------EARFDDFSDEEKTLKGSGGDEGLEISKLGIDQSMVNALAG 507
R H + GPL ++A E DDF EE + KG+ DEGLEI+KLGI Q +V+ALA
Sbjct: 48 RTFHSNPGPLNFRASSCHRAEYAVDDFPYEEGS-KGNA-DEGLEIAKLGISQDIVSALAK 105
Query: 508 KGITKLFPIQKAVLDPAMQGRDMIGRARTGTGKTLAFGIPILDKITSFNNAHGKGRNPLA 687
KGITKLFPIQ+AVL+PAMQGRDMIGRARTGTGKTLAFGIPI+DK+ FN HG+GR+PLA
Sbjct: 106 KGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKVIQFNAKHGRGRDPLA 165
Query: 688 IVLAPTRELAKQVDKEFRECAPHLDALCCYGGVPKYTQTQQLNYGVDVVVGTPGRIIDLC 867
+VLAPTRELA+QV+ EF E AP+LD +C YGG P Q +QL+YGVD+ VGTPGRIIDL
Sbjct: 166 LVLAPTRELARQVESEFCESAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLL 225
Query: 868 ETRALDLSEVQFAVLDEADQMLAVGFEEDVEKILQKLPQKRQTMMFSATMPQWIRQLSRK 1047
AL+L +VQF VLDEADQML VGF+EDVEKIL++LP KRQT+MFSATMP WI+Q+SR
Sbjct: 226 NRGALNLKDVQFVVLDEADQMLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIKQISRN 285
Query: 1048 YLRDALIIDLVGDSDKKLAEGISLYAIQADKFGKAGILGSLIKDHAKGGKCIVFTQTKRD 1227
YL + L IDLVGDSD+KLA+GISLY+I D + KAGIL LI +HAKGGKCIVFTQTKRD
Sbjct: 286 YLNNPLTIDLVGDSDQKLADGISLYSIATDLYVKAGILAPLITEHAKGGKCIVFTQTKRD 345
Query: 1228 ADRLSYALQRSLNCEPLHGDISQGQREKTLSGFRDGRFNVLVATDVAARGLDVPNVDLII 1407
ADRLSYA+ RS+ CE LHGDISQ QREKTL+GFR+G FNVLVATDVA+RGLD+PNVDL+I
Sbjct: 346 ADRLSYAMARSVKCEALHGDISQAQREKTLAGFRNGHFNVLVATDVASRGLDIPNVDLVI 405
Query: 1408 HYDSPSSSEIFVHRSGRTGRAGKKGTAILIYTDDQIRIVRGIEKDVGSKFSELPRIAAE 1584
HYD P++SEIFVHRSGRTGRAGKKGTAIL+YT+DQ R V+ IE+DVGS+FSELPRIA +
Sbjct: 406 HYDLPNNSEIFVHRSGRTGRAGKKGTAILVYTEDQSRAVKLIERDVGSRFSELPRIAVD 464