BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00004342
         (511 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containi...   188   3e-46
ref|XP_002512769.1| pentatricopeptide repeat-containing protein,...   169   2e-40
ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containi...   152   2e-35
ref|XP_003623854.1| Pentatricopeptide repeat-containing protein ...   142   3e-32
gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]   142   3e-32

>ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera] gi|297736133|emb|CBI24171.3| unnamed
           protein product [Vitis vinifera]
          Length = 687

 Score =  188 bits (478), Expect = 3e-46
 Identities = 92/140 (65%), Positives = 112/140 (80%), Gaps = 1/140 (0%)
 Frame = -2

Query: 417 MLTKLPTNLPSHLSHKFLKHYLNSGDLISARRLFDKIPEPDLPTWTILISAHTKQGHPKE 238
           ML+KLPT+LP HL+ KF+K Y NSGDL  AR LFDKIP+PDLPTWTILISA TK G   E
Sbjct: 1   MLSKLPTSLPPHLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLE 60

Query: 237 SIQLYTEFRRKG-IQPDSLVLLSVAKACAALSDSVKAKEIHDDVVRYGFSSDLVLGNALI 61
           +IQ Y +FR K  ++PD L+LLSVAKACA+L D + AK +H+D +R+GF SD++LGNALI
Sbjct: 61  AIQYYNDFRHKNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALI 120

Query: 60  DMYGKCRYVEGAQKVFEELP 1
           DMYGKCR  EGA+ VFE +P
Sbjct: 121 DMYGKCRCSEGARLVFEGMP 140



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 33/109 (30%), Positives = 61/109 (55%)
 Frame = -2

Query: 330 ARRLFDKIPEPDLPTWTILISAHTKQGHPKESIQLYTEFRRKGIQPDSLVLLSVAKACAA 151
           AR +F+ +P  D+ +WT + S +   G  +E++  + +    G +P+S+ + S+  AC  
Sbjct: 132 ARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTD 191

Query: 150 LSDSVKAKEIHDDVVRYGFSSDLVLGNALIDMYGKCRYVEGAQKVFEEL 4
           L D    +E+H  VVR G   ++ + +AL++MY  C  +  AQ VF+ +
Sbjct: 192 LKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSM 240



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 26/92 (28%), Positives = 49/92 (53%)
 Frame = -2

Query: 288 TWTILISAHTKQGHPKESIQLYTEFRRKGIQPDSLVLLSVAKACAALSDSVKAKEIHDDV 109
           +W  +I    + G  ++++++ +  +  G +P+ + + SV  AC  L      K+IH  +
Sbjct: 282 SWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYI 341

Query: 108 VRYGFSSDLVLGNALIDMYGKCRYVEGAQKVF 13
            R+ F  DL    AL+ MY KC  +E +++VF
Sbjct: 342 FRHWFFQDLTTTTALVFMYAKCGDLELSRRVF 373


>ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223547780|gb|EEF49272.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 684

 Score =  169 bits (429), Expect = 2e-40
 Identities = 82/138 (59%), Positives = 105/138 (76%)
 Frame = -2

Query: 417 MLTKLPTNLPSHLSHKFLKHYLNSGDLISARRLFDKIPEPDLPTWTILISAHTKQGHPKE 238
           M++KLP NL    S K +K  LNSGDL  A  LFDKIPEPDL TWTILIS HT+ G PK+
Sbjct: 1   MVSKLPANLQPCQSIKLIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKK 60

Query: 237 SIQLYTEFRRKGIQPDSLVLLSVAKACAALSDSVKAKEIHDDVVRYGFSSDLVLGNALID 58
           +I +Y+    + ++PD  VLLSVAKACAA  D V AK+IHDD +++GF+ DLVLGNALID
Sbjct: 61  AIDIYSTLLSRNVRPDKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALID 120

Query: 57  MYGKCRYVEGAQKVFEEL 4
           M+GKC++V GA+ VF+++
Sbjct: 121 MFGKCKFVNGARCVFDDM 138



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 36/163 (22%), Positives = 69/163 (42%), Gaps = 35/163 (21%)
 Frame = -2

Query: 384 HLSHKFLKHYLNSGDLISARRLFDKIPEPDLPTWTILISAHTKQGHPKESIQLYTEFRRK 205
           ++S   +  Y +S  L  AR +FD +   D+ +W ++++A+      +  + L+ + R++
Sbjct: 212 YVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQMRKE 271

Query: 204 GIQ-----------------------------------PDSLVLLSVAKACAALSDSVKA 130
           GI+                                   P+ + ++S    C  L      
Sbjct: 272 GIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGCTNLESLRGG 331

Query: 129 KEIHDDVVRYGFSSDLVLGNALIDMYGKCRYVEGAQKVFEELP 1
           KEIH  V R+ F  D+ +  AL+ +Y KC  +E ++ VF  +P
Sbjct: 332 KEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMP 374


>ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  152 bits (385), Expect = 2e-35
 Identities = 82/170 (48%), Positives = 108/170 (63%), Gaps = 6/170 (3%)
 Frame = -2

Query: 495 FFFPSTPFFILVHYTKVFFF*YSVHVMLTK------LPTNLPSHLSHKFLKHYLNSGDLI 334
           F F   PFF + H T+      S+   LT       +PTN+PSHL  + LK  LN GD  
Sbjct: 28  FGFVLPPFFSITHSTQSS----SIWKQLTSTKVAPSVPTNIPSHLGLRLLKAALNVGDFR 83

Query: 333 SARRLFDKIPEPDLPTWTILISAHTKQGHPKESIQLYTEFRRKGIQPDSLVLLSVAKACA 154
            A++LFD IP+PD  T + LISA T +G P E+I+LY   R +GI+P + V L+VAKAC 
Sbjct: 84  RAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACG 143

Query: 153 ALSDSVKAKEIHDDVVRYGFSSDLVLGNALIDMYGKCRYVEGAQKVFEEL 4
           A  D+ + KE+HDD +R G  SD  LGNALI  YGKC+ VEGA++VF++L
Sbjct: 144 ASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDL 193



 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 35/110 (31%), Positives = 64/110 (58%)
 Frame = -2

Query: 330 ARRLFDKIPEPDLPTWTILISAHTKQGHPKESIQLYTEFRRKGIQPDSLVLLSVAKACAA 151
           ARR+FD +   D+ +WT + S +   G P+  + ++ E    G++P+S+ L S+  AC+ 
Sbjct: 186 ARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSE 245

Query: 150 LSDSVKAKEIHDDVVRYGFSSDLVLGNALIDMYGKCRYVEGAQKVFEELP 1
           L D    + IH   VR+G   ++ + +AL+ +Y +C  V+ A+ VF+ +P
Sbjct: 246 LKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMP 295



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 27/98 (27%), Positives = 49/98 (50%)
 Frame = -2

Query: 303 EPDLPTWTILISAHTKQGHPKESIQLYTEFRRKGIQPDSLVLLSVAKACAALSDSVKAKE 124
           E D  TW  +I    + G  ++++++  + +  G +P+ + + S   AC+ L      KE
Sbjct: 331 EADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKE 390

Query: 123 IHDDVVRYGFSSDLVLGNALIDMYGKCRYVEGAQKVFE 10
           +H  V R+    DL    AL+ MY KC  +  ++ VF+
Sbjct: 391 VHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFD 428


>ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355498869|gb|AES80072.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  142 bits (358), Expect = 3e-32
 Identities = 68/134 (50%), Positives = 94/134 (70%)
 Frame = -2

Query: 405 LPTNLPSHLSHKFLKHYLNSGDLISARRLFDKIPEPDLPTWTILISAHTKQGHPKESIQL 226
           LPTN+PSHL  + ++  LN GD   AR+LFD IP+PD  T + LISA T  G   E+I++
Sbjct: 92  LPTNIPSHLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKI 151

Query: 225 YTEFRRKGIQPDSLVLLSVAKACAALSDSVKAKEIHDDVVRYGFSSDLVLGNALIDMYGK 46
           Y+  + +GI+PD  V L+ AKACA   D+++ KE+HDD  R G  SD+ +GNALI  YGK
Sbjct: 152 YSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGK 211

Query: 45  CRYVEGAQKVFEEL 4
           C+ VEGA++VF++L
Sbjct: 212 CKCVEGARRVFDDL 225



 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 40/110 (36%), Positives = 65/110 (59%)
 Frame = -2

Query: 330 ARRLFDKIPEPDLPTWTILISAHTKQGHPKESIQLYTEFRRKGIQPDSLVLLSVAKACAA 151
           ARR+FD +   D+ +WT L S + K G P++ + ++ E    G++P+ + + S+  ACA 
Sbjct: 218 ARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAE 277

Query: 150 LSDSVKAKEIHDDVVRYGFSSDLVLGNALIDMYGKCRYVEGAQKVFEELP 1
           L D    KEIH   VR+G   +L + +AL+ +Y KC  V  A+ VF+ +P
Sbjct: 278 LKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMP 327



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 27/96 (28%), Positives = 51/96 (53%)
 Frame = -2

Query: 297 DLPTWTILISAHTKQGHPKESIQLYTEFRRKGIQPDSLVLLSVAKACAALSDSVKAKEIH 118
           D  TW  +I    + G  +E+++++ + ++ G +P+ + + S+  AC+   +    KEIH
Sbjct: 365 DEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIH 424

Query: 117 DDVVRYGFSSDLVLGNALIDMYGKCRYVEGAQKVFE 10
             V R+    DL    AL+ MY KC  +  ++ VF+
Sbjct: 425 CYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFD 460


>gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  142 bits (358), Expect = 3e-32
 Identities = 68/134 (50%), Positives = 94/134 (70%)
 Frame = -2

Query: 405 LPTNLPSHLSHKFLKHYLNSGDLISARRLFDKIPEPDLPTWTILISAHTKQGHPKESIQL 226
           LPTN+PSHL  + ++  LN GD   AR+LFD IP+PD  T + LISA T  G   E+I++
Sbjct: 6   LPTNIPSHLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKI 65

Query: 225 YTEFRRKGIQPDSLVLLSVAKACAALSDSVKAKEIHDDVVRYGFSSDLVLGNALIDMYGK 46
           Y+  + +GI+PD  V L+ AKACA   D+++ KE+HDD  R G  SD+ +GNALI  YGK
Sbjct: 66  YSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGK 125

Query: 45  CRYVEGAQKVFEEL 4
           C+ VEGA++VF++L
Sbjct: 126 CKCVEGARRVFDDL 139



 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 40/110 (36%), Positives = 65/110 (59%)
 Frame = -2

Query: 330 ARRLFDKIPEPDLPTWTILISAHTKQGHPKESIQLYTEFRRKGIQPDSLVLLSVAKACAA 151
           ARR+FD +   D+ +WT L S + K G P++ + ++ E    G++P+ + + S+  ACA 
Sbjct: 132 ARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAE 191

Query: 150 LSDSVKAKEIHDDVVRYGFSSDLVLGNALIDMYGKCRYVEGAQKVFEELP 1
           L D    KEIH   VR+G   +L + +AL+ +Y KC  V  A+ VF+ +P
Sbjct: 192 LKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMP 241



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 27/96 (28%), Positives = 51/96 (53%)
 Frame = -2

Query: 297 DLPTWTILISAHTKQGHPKESIQLYTEFRRKGIQPDSLVLLSVAKACAALSDSVKAKEIH 118
           D  TW  +I    + G  +E+++++ + ++ G +P+ + + S+  AC+   +    KEIH
Sbjct: 279 DEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIH 338

Query: 117 DDVVRYGFSSDLVLGNALIDMYGKCRYVEGAQKVFE 10
             V R+    DL    AL+ MY KC  +  ++ VF+
Sbjct: 339 CYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFD 374