BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00004341
         (798 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADN34131.1| tRNA pseudouridine synthase family protein [Cucum...   114   2e-23
ref|XP_004157082.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudou...   113   4e-23
ref|XP_004145528.1| PREDICTED: tRNA pseudouridine synthase A, mi...   113   4e-23
ref|XP_002300673.1| predicted protein [Populus trichocarpa] gi|2...   109   8e-22
ref|XP_003610360.1| tRNA pseudouridine synthase [Medicago trunca...   107   3e-21

>gb|ADN34131.1| tRNA pseudouridine synthase family protein [Cucumis melo subsp.
           melo]
          Length = 519

 Score =  114 bits (285), Expect = 2e-23
 Identities = 53/77 (68%), Positives = 63/77 (81%)
 Frame = +3

Query: 3   SYNQKWKDTHEEISMEAYVEQAEDFKMKQVYSHIASMEQKEGSVAVWLHSLNLRNYPDLR 182
           SYNQKWKDTHEE+SM+AY E AEDFKMKQ+YSHIAS E K+G+VA+WLHSLN RNYPDLR
Sbjct: 438 SYNQKWKDTHEEVSMKAYEEVAEDFKMKQIYSHIASTEHKDGAVALWLHSLNHRNYPDLR 497

Query: 183 FVEDNETCTIGENVQVE 233
            ++  E   I +N  V+
Sbjct: 498 VID--EVAKIAKNTSVD 512


>ref|XP_004157082.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase A,
           mitochondrial-like [Cucumis sativus]
          Length = 519

 Score =  113 bits (283), Expect = 4e-23
 Identities = 52/77 (67%), Positives = 63/77 (81%)
 Frame = +3

Query: 3   SYNQKWKDTHEEISMEAYVEQAEDFKMKQVYSHIASMEQKEGSVAVWLHSLNLRNYPDLR 182
           SYNQKWKDTHEE+SM+AY E AEDFKMKQ+YSHIAS E K+G+VA+WLHSLN RNYPDLR
Sbjct: 438 SYNQKWKDTHEEVSMKAYEEAAEDFKMKQIYSHIASTEHKDGAVALWLHSLNHRNYPDLR 497

Query: 183 FVEDNETCTIGENVQVE 233
            ++  E   I +N  ++
Sbjct: 498 VID--EVAKIAKNASLD 512


>ref|XP_004145528.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
           [Cucumis sativus]
          Length = 519

 Score =  113 bits (283), Expect = 4e-23
 Identities = 52/77 (67%), Positives = 63/77 (81%)
 Frame = +3

Query: 3   SYNQKWKDTHEEISMEAYVEQAEDFKMKQVYSHIASMEQKEGSVAVWLHSLNLRNYPDLR 182
           SYNQKWKDTHEE+SM+AY E AEDFKMKQ+YSHIAS E K+G+VA+WLHSLN RNYPDLR
Sbjct: 438 SYNQKWKDTHEEVSMKAYEEAAEDFKMKQIYSHIASTEHKDGAVALWLHSLNHRNYPDLR 497

Query: 183 FVEDNETCTIGENVQVE 233
            ++  E   I +N  ++
Sbjct: 498 VID--EVAKIAKNASLD 512


>ref|XP_002300673.1| predicted protein [Populus trichocarpa] gi|222842399|gb|EEE79946.1|
           predicted protein [Populus trichocarpa]
          Length = 429

 Score =  109 bits (272), Expect = 8e-22
 Identities = 49/61 (80%), Positives = 55/61 (90%)
 Frame = +3

Query: 3   SYNQKWKDTHEEISMEAYVEQAEDFKMKQVYSHIASMEQKEGSVAVWLHSLNLRNYPDLR 182
           SYNQKWKD+HEEISM+ Y E+AEDFKMK +YSHIA+ E KEGSVA+WLHSLN RNYPDLR
Sbjct: 354 SYNQKWKDSHEEISMKDYEEEAEDFKMKHIYSHIATTEHKEGSVALWLHSLNHRNYPDLR 413

Query: 183 F 185
           F
Sbjct: 414 F 414


>ref|XP_003610360.1| tRNA pseudouridine synthase [Medicago truncatula]
           gi|355511415|gb|AES92557.1| tRNA pseudouridine synthase
           [Medicago truncatula] gi|388510220|gb|AFK43176.1|
           unknown [Medicago truncatula]
          Length = 530

 Score =  107 bits (267), Expect = 3e-21
 Identities = 50/77 (64%), Positives = 62/77 (80%)
 Frame = +3

Query: 3   SYNQKWKDTHEEISMEAYVEQAEDFKMKQVYSHIASMEQKEGSVAVWLHSLNLRNYPDLR 182
           SYNQKWKDTHEE+SM+AY ++AEDFKM+ +Y HIAS E KEG+V +WLHSLN RNYPDLR
Sbjct: 442 SYNQKWKDTHEEVSMKAYEKEAEDFKMQYIYPHIASTEYKEGTVGLWLHSLNHRNYPDLR 501

Query: 183 FVEDNETCTIGENVQVE 233
            + D E  T  + V+V+
Sbjct: 502 IL-DGEGVTNDKKVEVD 517