BLASTX nr result
ID: Coptis25_contig00004328
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00004328
(1424 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002533281.1| pentatricopeptide repeat-containing protein,... 561 e-157
ref|XP_002269506.1| PREDICTED: pentatricopeptide repeat-containi... 560 e-157
emb|CBI17585.3| unnamed protein product [Vitis vinifera] 545 e-152
ref|XP_002327713.1| predicted protein [Populus trichocarpa] gi|2... 541 e-151
ref|XP_003538834.1| PREDICTED: pentatricopeptide repeat-containi... 536 e-150
>ref|XP_002533281.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223526906|gb|EEF29113.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 652
Score = 561 bits (1447), Expect = e-157
Identities = 286/476 (60%), Positives = 358/476 (75%), Gaps = 2/476 (0%)
Frame = -3
Query: 1422 ESYNILLNIYVKNSQHLYAVDLFCQMIHDGAYPNYRTYTIVMHHLVSLGKLNEAHEIFET 1243
ESYNI+++++ K AV++F +MI +GA PN RTYT+++ HLV LGKL+ A E+F
Sbjct: 173 ESYNIIMSLFAKMGNDAKAVEIFYRMIDEGAIPNSRTYTVMIEHLVKLGKLDSAIEVFSV 232
Query: 1242 LPSMRIKRTVNQYLILAQGFSGVERFEVVKKLFQKMERDGIVPTQNMVSSLKCLQDTGVL 1063
LP MRIKRT+ QY +L GF GVERF+ VKKL +M+ DG P + M S+L+ +Q+ G +
Sbjct: 233 LPLMRIKRTLKQYSVLVDGFVGVERFDEVKKLVNEMKVDGKFPGRAMHSALQRMQEAGFV 292
Query: 1062 EGLEGLWRELMPDKRIASIXXXXXXXXXXXXE--NVGKGDSCRVDGDDVRLKPWLDPGAL 889
E + +E+ PD+RI SI + NV GD D +VRLKPWLDP AL
Sbjct: 293 EETKEFVKEMFPDERIKSIGSCSDGSDDDEDDYENVNNGD-VHTDTSEVRLKPWLDPKAL 351
Query: 888 ANALSDWDPTDVLALENANFVWTTRLVCKMLRRFKKAETAWKFFCWVAYQPGEFTHDGFT 709
ANALS W P V LE+A FVWTTRLVCK+LR F ETAW FFCWVAYQPG FTHD +T
Sbjct: 352 ANALSQWSPEVVSMLEDAKFVWTTRLVCKVLRNFSSPETAWYFFCWVAYQPG-FTHDVYT 410
Query: 708 ISRMITMLARYGHVELVDQLIMKVKRERIRLSFSTVRLVIDFYGLSKQPDAAMRVFYDIE 529
+ RM+T+LAR+G VELVD+LI K++ E +RL FST+RL+IDFYG+SK DAA++VF D
Sbjct: 411 VQRMMTLLARHGKVELVDKLITKIRIEGMRLPFSTIRLIIDFYGISKNADAALKVFRDDR 470
Query: 528 TVSGAISKHHQSLLYSSLLRTLVKCKRGSDVMDVLEEMILSGIIPDIQTFSGLMQYFALE 349
+ G+I+K + LLYSSLLRTL KC R SD +DVLEEMIL GI PDIQT+SGLM +FAL+
Sbjct: 471 PLCGSITKFNLMLLYSSLLRTLTKCNRNSDAIDVLEEMILCGISPDIQTYSGLMYHFALQ 530
Query: 348 GDLKTVQKLFGIVRQSGIEPDAYMFQVLIRAYCKRERAALAVRIYEDMRNSNLIPDSATK 169
GD+KT QKLF IVRQSG+EPDAYMF+VLI AYCK ERAALA R++EDM+NSNL+PD+ATK
Sbjct: 531 GDIKTAQKLFTIVRQSGVEPDAYMFKVLILAYCKCERAALAWRVFEDMKNSNLMPDTATK 590
Query: 168 ALLVKSLWKEGKLREAAYVEEISEDINDMLPPALPGHLWTVSAADLKRVYDIYSNS 1
L+KSLWKEGK +EAA VEE E+ N++LP L GH+WTVS+ADL RVY+IYSN+
Sbjct: 591 DFLIKSLWKEGKRKEAAIVEESCEESNNVLPLVLRGHIWTVSSADLTRVYNIYSNT 646
>ref|XP_002269506.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66631-like
[Vitis vinifera]
Length = 660
Score = 560 bits (1444), Expect = e-157
Identities = 275/474 (58%), Positives = 361/474 (76%)
Frame = -3
Query: 1422 ESYNILLNIYVKNSQHLYAVDLFCQMIHDGAYPNYRTYTIVMHHLVSLGKLNEAHEIFET 1243
E+YNI++ +YV+ + A+ +F ++I +GA PN RTYT+V+ HL + GKL+ A ++F
Sbjct: 172 EAYNIVMRLYVQMGKDSEAMQIFHKIISEGAIPNSRTYTVVLEHLANSGKLDSAIKVFNI 231
Query: 1242 LPSMRIKRTVNQYLILAQGFSGVERFEVVKKLFQKMERDGIVPTQNMVSSLKCLQDTGVL 1063
LP MRI+RT+ QY IL + F+ + RF+VVK L +M+ DGI+P + M SL+ +Q+ G +
Sbjct: 232 LPLMRIRRTLRQYSILVEEFTSINRFDVVKALLDEMQIDGILPGRAMQLSLQRMQEAGFV 291
Query: 1062 EGLEGLWRELMPDKRIASIXXXXXXXXXXXXENVGKGDSCRVDGDDVRLKPWLDPGALAN 883
+ R ++PD+RI ++ EN D VDG V+LKPWLDP ALAN
Sbjct: 292 HETDEFLRGMLPDERIKNVGFCVDSSDDDDDENNHSSDDAGVDG--VQLKPWLDPRALAN 349
Query: 882 ALSDWDPTDVLALENANFVWTTRLVCKMLRRFKKAETAWKFFCWVAYQPGEFTHDGFTIS 703
AL++WDP +VLALE A F+WTTRLVCK+LR F ETAWKFFCWVAYQPG F H+ +T+
Sbjct: 350 ALNNWDPNEVLALEEAKFIWTTRLVCKILRNFNSPETAWKFFCWVAYQPGGFNHNIYTVQ 409
Query: 702 RMITMLARYGHVELVDQLIMKVKRERIRLSFSTVRLVIDFYGLSKQPDAAMRVFYDIETV 523
RM+T+LAR+GHVELV++L++K++RE IRL ST+RL+IDFYG+S+ DAA++VF+D E++
Sbjct: 410 RMMTLLARHGHVELVEKLLLKIRREEIRLPVSTIRLIIDFYGISRNADAALKVFHDAESL 469
Query: 522 SGAISKHHQSLLYSSLLRTLVKCKRGSDVMDVLEEMILSGIIPDIQTFSGLMQYFALEGD 343
G +SK + LLYSSLLRTL KC R +D +DVLE+M L GI PD+ TFSGLM +FALEGD
Sbjct: 470 CGPMSKLYLMLLYSSLLRTLTKCGRSADALDVLEQMFLGGICPDVPTFSGLMYHFALEGD 529
Query: 342 LKTVQKLFGIVRQSGIEPDAYMFQVLIRAYCKRERAALAVRIYEDMRNSNLIPDSATKAL 163
KTVQKLF +VRQSG+EPDAYMF+VLI YCK ER+ALA+R++EDMR+ NL+PD+ATK L
Sbjct: 530 FKTVQKLFMMVRQSGVEPDAYMFKVLIHGYCKCERSALALRVFEDMRSLNLMPDAATKNL 589
Query: 162 LVKSLWKEGKLREAAYVEEISEDINDMLPPALPGHLWTVSAADLKRVYDIYSNS 1
LVK LWKEG+ REAA VEE E+IN LP AL GH+WT+S+ADLKRVYDIYSNS
Sbjct: 590 LVKCLWKEGRRREAASVEERCEEINYGLPFALRGHMWTMSSADLKRVYDIYSNS 643
>emb|CBI17585.3| unnamed protein product [Vitis vinifera]
Length = 636
Score = 545 bits (1404), Expect = e-152
Identities = 268/474 (56%), Positives = 353/474 (74%)
Frame = -3
Query: 1422 ESYNILLNIYVKNSQHLYAVDLFCQMIHDGAYPNYRTYTIVMHHLVSLGKLNEAHEIFET 1243
E+YNI++ +YV+ + A+ +F ++I +GA PN RTYT+V+ HL + GKL+ A ++F
Sbjct: 172 EAYNIVMRLYVQMGKDSEAMQIFHKIISEGAIPNSRTYTVVLEHLANSGKLDSAIKVFNI 231
Query: 1242 LPSMRIKRTVNQYLILAQGFSGVERFEVVKKLFQKMERDGIVPTQNMVSSLKCLQDTGVL 1063
LP MRI+RT+ QY IL + F+ + RF+VVK L +M+ DGI+P + M SL+ +Q+ G +
Sbjct: 232 LPLMRIRRTLRQYSILVEEFTSINRFDVVKALLDEMQIDGILPGRAMQLSLQRMQEAGFV 291
Query: 1062 EGLEGLWRELMPDKRIASIXXXXXXXXXXXXENVGKGDSCRVDGDDVRLKPWLDPGALAN 883
+ R ++PD+RI ++ LKPWLDP ALAN
Sbjct: 292 HETDEFLRGMLPDERIKNVGFC--------------------------LKPWLDPRALAN 325
Query: 882 ALSDWDPTDVLALENANFVWTTRLVCKMLRRFKKAETAWKFFCWVAYQPGEFTHDGFTIS 703
AL++WDP +VLALE A F+WTTRLVCK+LR F ETAWKFFCWVAYQPG F H+ +T+
Sbjct: 326 ALNNWDPNEVLALEEAKFIWTTRLVCKILRNFNSPETAWKFFCWVAYQPGGFNHNIYTVQ 385
Query: 702 RMITMLARYGHVELVDQLIMKVKRERIRLSFSTVRLVIDFYGLSKQPDAAMRVFYDIETV 523
RM+T+LAR+GHVELV++L++K++RE IRL ST+RL+IDFYG+S+ DAA++VF+D E++
Sbjct: 386 RMMTLLARHGHVELVEKLLLKIRREEIRLPVSTIRLIIDFYGISRNADAALKVFHDAESL 445
Query: 522 SGAISKHHQSLLYSSLLRTLVKCKRGSDVMDVLEEMILSGIIPDIQTFSGLMQYFALEGD 343
G +SK + LLYSSLLRTL KC R +D +DVLE+M L GI PD+ TFSGLM +FALEGD
Sbjct: 446 CGPMSKLYLMLLYSSLLRTLTKCGRSADALDVLEQMFLGGICPDVPTFSGLMYHFALEGD 505
Query: 342 LKTVQKLFGIVRQSGIEPDAYMFQVLIRAYCKRERAALAVRIYEDMRNSNLIPDSATKAL 163
KTVQKLF +VRQSG+EPDAYMF+VLI YCK ER+ALA+R++EDMR+ NL+PD+ATK L
Sbjct: 506 FKTVQKLFMMVRQSGVEPDAYMFKVLIHGYCKCERSALALRVFEDMRSLNLMPDAATKNL 565
Query: 162 LVKSLWKEGKLREAAYVEEISEDINDMLPPALPGHLWTVSAADLKRVYDIYSNS 1
LVK LWKEG+ REAA VEE E+IN LP AL GH+WT+S+ADLKRVYDIYSNS
Sbjct: 566 LVKCLWKEGRRREAASVEERCEEINYGLPFALRGHMWTMSSADLKRVYDIYSNS 619
>ref|XP_002327713.1| predicted protein [Populus trichocarpa] gi|222836798|gb|EEE75191.1|
predicted protein [Populus trichocarpa]
Length = 517
Score = 541 bits (1393), Expect = e-151
Identities = 278/482 (57%), Positives = 351/482 (72%), Gaps = 8/482 (1%)
Frame = -3
Query: 1422 ESYNILLNIYVKNSQHLYAVDLFCQMIHDGAYPNYRTYTIVMHHLVSLGKLNEAHEIFET 1243
ESYNI++ +Y + + AV +F +MIH+GA PN RTYT+++ HLV+ GKL+ A EIF
Sbjct: 30 ESYNIVMGLYAQKGRDCEAVRVFYRMIHEGAIPNSRTYTVMIEHLVNSGKLDPAIEIFSV 89
Query: 1242 LPSMRIKRTVNQYLILAQGFSGVERFEVVKKLFQKMERDGIVPTQNMVSSLKCLQDTGVL 1063
LP MRIKRT+ QYL+L +GF G+ERF+ V+ L +M DG P + M +L+CLQ+ G +
Sbjct: 90 LPLMRIKRTLKQYLVLVEGFVGLERFDGVRTLLDEMRADGKFPGRAMRKALQCLQEAGFV 149
Query: 1062 EGLEGLWRELMPDKRIASIXXXXXXXXXXXXENVGKGDSCR--------VDGDDVRLKPW 907
E E +E+ PD+RI SI + G D D +VRLKPW
Sbjct: 150 EETEEFLKEMFPDERIKSISNSGDISFDKDGDEDGDEDEDEDENHGCAFADIQEVRLKPW 209
Query: 906 LDPGALANALSDWDPTDVLALENANFVWTTRLVCKMLRRFKKAETAWKFFCWVAYQPGEF 727
LDP ALA AL+ W P V ALE+A FVWTTRLV K+LR ETAW FFCWVAYQPG F
Sbjct: 210 LDPRALAKALNKWSPDVVSALEDAKFVWTTRLVWKVLRNINSPETAWDFFCWVAYQPG-F 268
Query: 726 THDGFTISRMITMLARYGHVELVDQLIMKVKRERIRLSFSTVRLVIDFYGLSKQPDAAMR 547
TH +T+ RM+T+LA++G VELVDQLI K++ E +RL FST+RL+IDF G+SK DAA++
Sbjct: 269 THCVYTVQRMMTLLAKHGKVELVDQLINKIRSEGMRLPFSTIRLIIDFCGISKNADAALK 328
Query: 546 VFYDIETVSGAISKHHQSLLYSSLLRTLVKCKRGSDVMDVLEEMILSGIIPDIQTFSGLM 367
VF + + G I+K++ LLYSSL+RTL KCKR SD +DVLEEMIL GI PDIQTFSGLM
Sbjct: 329 VFREDRALCGPITKYNLMLLYSSLIRTLTKCKRDSDAIDVLEEMILCGICPDIQTFSGLM 388
Query: 366 QYFALEGDLKTVQKLFGIVRQSGIEPDAYMFQVLIRAYCKRERAALAVRIYEDMRNSNLI 187
+FA +GD+KTVQKL IVRQS +EPDAYM++VLI+AYCK +RAALA RI+EDM+NSNLI
Sbjct: 389 YHFASQGDIKTVQKLLTIVRQSDVEPDAYMYKVLIQAYCKCDRAALAWRIFEDMKNSNLI 448
Query: 186 PDSATKALLVKSLWKEGKLREAAYVEEISEDINDMLPPALPGHLWTVSAADLKRVYDIYS 7
PD+ATK LLVKSLWKEGKL+EAA VEE + IN +LP GH WTVS+ADL ++Y++YS
Sbjct: 449 PDAATKDLLVKSLWKEGKLKEAATVEESCDGINSVLPLKQHGHKWTVSSADLAKIYNLYS 508
Query: 6 NS 1
NS
Sbjct: 509 NS 510
>ref|XP_003538834.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66631-like
[Glycine max]
Length = 658
Score = 536 bits (1381), Expect = e-150
Identities = 269/479 (56%), Positives = 356/479 (74%), Gaps = 5/479 (1%)
Frame = -3
Query: 1422 ESYNILLNIYVKNSQHLYAVDLFCQMIHDGAYPNYRTYTIVMHHLVSLGKLNEAHEIFET 1243
ESYNI++ +Y + + AV +F +MI +G+ PN R+YT+++ HLV KL+EA E+F
Sbjct: 179 ESYNIVMTLYAQMGKDFEAVRVFRRMIDEGSLPNCRSYTVIIEHLVKSRKLSEALEVFNL 238
Query: 1242 LPSMRIKRTVNQYLILAQGFSGVERFEVVKKLFQKMERDGIVPTQNMVSSLKCLQDTGVL 1063
LPSMRIKRT+ QY +L +GF G ++F+ V+ L ++M+ DGI+P++ M L+ +++ G+L
Sbjct: 239 LPSMRIKRTLRQYSVLLEGFVGSKQFDEVRILVEEMQVDGILPSRGMGLLLQQMKEEGIL 298
Query: 1062 EGLEGLWRELMPDKRIASIXXXXXXXXXXXXENVGKGDSCRVDG-----DDVRLKPWLDP 898
EG E L R ++PD+ I S+ EN + ++ G D + LKPW+DP
Sbjct: 299 EGKEQLLRGILPDETIRSVSYSIDSGDEDENENEDQDENISDAGQCNHVDGIHLKPWMDP 358
Query: 897 GALANALSDWDPTDVLALENANFVWTTRLVCKMLRRFKKAETAWKFFCWVAYQPGEFTHD 718
AL +AL +W P +V ALE+ANFVWTTRLVCKMLR FK E AW FFCW A Q G FTHD
Sbjct: 359 RALVSALRNWSPDEVAALESANFVWTTRLVCKMLRNFKTPEAAWSFFCWAANQRG-FTHD 417
Query: 717 GFTISRMITMLARYGHVELVDQLIMKVKRERIRLSFSTVRLVIDFYGLSKQPDAAMRVFY 538
+T+ R+ T+LAR+G +LVD+LI K++ ER+RL FST+R++IDFYG+SK+ DAA++VF
Sbjct: 418 IYTVQRITTLLARHGRTDLVDRLISKIRMERMRLPFSTIRMIIDFYGISKKADAALKVFN 477
Query: 537 DIETVSGAISKHHQSLLYSSLLRTLVKCKRGSDVMDVLEEMILSGIIPDIQTFSGLMQYF 358
D + G IS + LLYSSLLRTL KC R SD +D+L++MIL+GI PDIQTFSGLM YF
Sbjct: 478 DDRILCGPISNVNLMLLYSSLLRTLTKCGRNSDALDMLDDMILNGICPDIQTFSGLMYYF 537
Query: 357 ALEGDLKTVQKLFGIVRQSGIEPDAYMFQVLIRAYCKRERAALAVRIYEDMRNSNLIPDS 178
+ GD+KTVQKLF +VRQSG+EPDAY+F+ LI+ YCK ERAALA R++EDM+NS L+PDS
Sbjct: 538 SQLGDIKTVQKLFAMVRQSGLEPDAYLFKALIQGYCKSERAALAWRLFEDMKNSGLVPDS 597
Query: 177 ATKALLVKSLWKEGKLREAAYVEEISEDINDMLPPALPGHLWTVSAADLKRVYDIYSNS 1
ATK LLVKSLWKEG+ REAA VEE E+IN +LP AL GH+WTVS+ADL RVY+IYSNS
Sbjct: 598 ATKELLVKSLWKEGRRREAAAVEESYEEINTVLPLALQGHVWTVSSADLTRVYNIYSNS 656