BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00004274
         (1230 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282652.1| PREDICTED: ATP-dependent Clp protease proteo...   392   e-106
ref|XP_003534318.1| PREDICTED: ATP-dependent Clp protease proteo...   390   e-106
gb|AFK33568.1| unknown [Lotus japonicus]                              389   e-105
ref|XP_003517082.1| PREDICTED: ATP-dependent Clp protease proteo...   388   e-105
ref|XP_002519881.1| ATP-dependent Clp protease proteolytic subun...   382   e-104

>ref|XP_002282652.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 4,
           chloroplastic [Vitis vinifera]
          Length = 291

 Score =  392 bits (1006), Expect = e-106
 Identities = 194/220 (88%), Positives = 212/220 (96%)
 Frame = -3

Query: 997 SRGADTDAMGLLLRERIVFLGNQIDDFVADAIISQLLLLDAQDPTKDIRLFINSPGGSLS 818
           +RGA+ DAMGLLL+ERIVFLGN +DDFVADAIISQLLLLDAQDPTKDIRLFINSPGGSLS
Sbjct: 72  ARGAEADAMGLLLKERIVFLGNNVDDFVADAIISQLLLLDAQDPTKDIRLFINSPGGSLS 131

Query: 817 ATMAIYDVVQLVRADISTIALGIAASTASIILGGGTKGKRLAMPNTRIMLHQPLGGASGQ 638
           ATMAIYD+VQLVRAD+ST+ALGI+ASTASIILGGGTKGKR AMPNTRIM+HQPLGGASGQ
Sbjct: 132 ATMAIYDIVQLVRADVSTVALGISASTASIILGGGTKGKRFAMPNTRIMIHQPLGGASGQ 191

Query: 637 AIDVEIQAKEIMHNKNNVTRIISGFTGRNFDQVKKDIDRDRYMSPIEAVEYGIIDGVIDR 458
           AIDVEIQA+EIMHNK+NVT+II+GF+GR+F+QV+KDIDRDRYMSPIEAVEYGIID VIDR
Sbjct: 192 AIDVEIQAQEIMHNKSNVTKIIAGFSGRSFEQVEKDIDRDRYMSPIEAVEYGIIDAVIDR 251

Query: 457 DCIIPLMPVPEKVKSRYNYEEIGKDPMKFLTPDIPDDEIY 338
           D IIPL+PVPEKVKSR NYEEI KDP KFLTPDIPDDEIY
Sbjct: 252 DSIIPLVPVPEKVKSRLNYEEISKDPRKFLTPDIPDDEIY 291


>ref|XP_003534318.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 4,
            chloroplastic-like [Glycine max]
          Length = 306

 Score =  390 bits (1003), Expect = e-106
 Identities = 194/222 (87%), Positives = 210/222 (94%)
 Frame = -3

Query: 1003 TASRGADTDAMGLLLRERIVFLGNQIDDFVADAIISQLLLLDAQDPTKDIRLFINSPGGS 824
            TA+RGA+ D MGLLLRERIVFLG+ IDDFVADAI+SQ+LLLDAQDPTKDIRLFINS GGS
Sbjct: 85   TAARGAEGDVMGLLLRERIVFLGSSIDDFVADAIMSQMLLLDAQDPTKDIRLFINSTGGS 144

Query: 823  LSATMAIYDVVQLVRADISTIALGIAASTASIILGGGTKGKRLAMPNTRIMLHQPLGGAS 644
            LSATMAIYD VQLVRAD+ST+ALGIAASTAS+ILGGGTKGKR AMPNTRIM+HQPLGGAS
Sbjct: 145  LSATMAIYDAVQLVRADVSTVALGIAASTASVILGGGTKGKRFAMPNTRIMIHQPLGGAS 204

Query: 643  GQAIDVEIQAKEIMHNKNNVTRIISGFTGRNFDQVKKDIDRDRYMSPIEAVEYGIIDGVI 464
            GQAIDVEIQAKE+MHNKNN+TRIIS FTGR+F+QV+KDIDRD+YMSPIEAVEYGIIDGVI
Sbjct: 205  GQAIDVEIQAKEVMHNKNNITRIISSFTGRSFEQVQKDIDRDKYMSPIEAVEYGIIDGVI 264

Query: 463  DRDCIIPLMPVPEKVKSRYNYEEIGKDPMKFLTPDIPDDEIY 338
            DRD IIPLMPVPE+VKS  NYEEI KDP KFLTPDIPDDEIY
Sbjct: 265  DRDSIIPLMPVPERVKSTLNYEEISKDPRKFLTPDIPDDEIY 306


>gb|AFK33568.1| unknown [Lotus japonicus]
          Length = 308

 Score =  389 bits (998), Expect = e-105
 Identities = 203/265 (76%), Positives = 223/265 (84%), Gaps = 4/265 (1%)
 Frame = -3

Query: 1120 CSIKTPASRIISAAGHVELQTSF----LKNXXXXXXXXXXXXPTASRGADTDAMGLLLRE 953
            C   TP   I++A+ +     +F    LK              TA RGA+TDAM LLLRE
Sbjct: 44   CHRTTPLKCILTASPNHSKNANFEPESLKPRITFQMSSPQTPATAIRGAETDAMWLLLRE 103

Query: 952  RIVFLGNQIDDFVADAIISQLLLLDAQDPTKDIRLFINSPGGSLSATMAIYDVVQLVRAD 773
            RIVFLG+ IDDFVADAI+SQLLLLDAQDP+KDI+LFINSPGGSLSATMAIYD VQLVRAD
Sbjct: 104  RIVFLGSGIDDFVADAIMSQLLLLDAQDPSKDIKLFINSPGGSLSATMAIYDAVQLVRAD 163

Query: 772  ISTIALGIAASTASIILGGGTKGKRLAMPNTRIMLHQPLGGASGQAIDVEIQAKEIMHNK 593
            +STIALGIAASTASIILGGGTKGKR AMPNTRIM+HQPLGGASGQAIDVEIQAKE+MHNK
Sbjct: 164  VSTIALGIAASTASIILGGGTKGKRFAMPNTRIMIHQPLGGASGQAIDVEIQAKEVMHNK 223

Query: 592  NNVTRIISGFTGRNFDQVKKDIDRDRYMSPIEAVEYGIIDGVIDRDCIIPLMPVPEKVKS 413
            NNVTRIISGFTGR F+QV+KDIDRDRYMSPIEAVEYGIIDGVID++ IIPL PVPE+V+S
Sbjct: 224  NNVTRIISGFTGRTFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDKESIIPLEPVPERVRS 283

Query: 412  RYNYEEIGKDPMKFLTPDIPDDEIY 338
              NYEEI KDP KFLTP+IPDDEIY
Sbjct: 284  TLNYEEISKDPRKFLTPEIPDDEIY 308


>ref|XP_003517082.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 4,
            chloroplastic-like [Glycine max]
          Length = 306

 Score =  388 bits (997), Expect = e-105
 Identities = 194/222 (87%), Positives = 209/222 (94%)
 Frame = -3

Query: 1003 TASRGADTDAMGLLLRERIVFLGNQIDDFVADAIISQLLLLDAQDPTKDIRLFINSPGGS 824
            TA+RGA+ D MGLLLRERIVFLG+ IDDFVADAI+SQLLLLDA DPTKDIRLFINS GGS
Sbjct: 85   TAARGAEGDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDALDPTKDIRLFINSTGGS 144

Query: 823  LSATMAIYDVVQLVRADISTIALGIAASTASIILGGGTKGKRLAMPNTRIMLHQPLGGAS 644
            LSATMAIYD VQLVRAD+ST+ALGIAASTAS+ILGGGTKGKR AMPNTRIM+HQPLGGAS
Sbjct: 145  LSATMAIYDAVQLVRADVSTVALGIAASTASVILGGGTKGKRFAMPNTRIMVHQPLGGAS 204

Query: 643  GQAIDVEIQAKEIMHNKNNVTRIISGFTGRNFDQVKKDIDRDRYMSPIEAVEYGIIDGVI 464
            GQAIDVEIQAKE+MHNKNN+TRIIS FTGR+F+QV+KDIDRD+YMSPIEAVEYGIIDGVI
Sbjct: 205  GQAIDVEIQAKEVMHNKNNITRIISSFTGRSFEQVQKDIDRDKYMSPIEAVEYGIIDGVI 264

Query: 463  DRDCIIPLMPVPEKVKSRYNYEEIGKDPMKFLTPDIPDDEIY 338
            DRD IIPLMPVPE+VKS  NYEEI KDP KFLTPDIPDDEIY
Sbjct: 265  DRDSIIPLMPVPERVKSTLNYEEISKDPRKFLTPDIPDDEIY 306


>ref|XP_002519881.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
            communis] gi|223540927|gb|EEF42485.1| ATP-dependent Clp
            protease proteolytic subunit, putative [Ricinus communis]
          Length = 294

 Score =  382 bits (982), Expect = e-104
 Identities = 193/222 (86%), Positives = 206/222 (92%)
 Frame = -3

Query: 1003 TASRGADTDAMGLLLRERIVFLGNQIDDFVADAIISQLLLLDAQDPTKDIRLFINSPGGS 824
            TA RGA++DAMGLLLRERIVFLGN IDDFVADA ISQLLLLDAQDPTKDIRLFIN PGGS
Sbjct: 73   TAMRGAESDAMGLLLRERIVFLGNNIDDFVADATISQLLLLDAQDPTKDIRLFINCPGGS 132

Query: 823  LSATMAIYDVVQLVRADISTIALGIAASTASIILGGGTKGKRLAMPNTRIMLHQPLGGAS 644
            LSATMAIYDVVQLVRAD+ST+ALGI+ASTASIILGGGTKGKR AMPNTRIM+HQPLGGAS
Sbjct: 133  LSATMAIYDVVQLVRADVSTVALGISASTASIILGGGTKGKRFAMPNTRIMVHQPLGGAS 192

Query: 643  GQAIDVEIQAKEIMHNKNNVTRIISGFTGRNFDQVKKDIDRDRYMSPIEAVEYGIIDGVI 464
            GQAIDVEIQA+EIMHNKNNV RIISGFTGR  +QV KDIDRDRYMSPIEAVEYGIIDGVI
Sbjct: 193  GQAIDVEIQAREIMHNKNNVVRIISGFTGRTVEQVLKDIDRDRYMSPIEAVEYGIIDGVI 252

Query: 463  DRDCIIPLMPVPEKVKSRYNYEEIGKDPMKFLTPDIPDDEIY 338
            D D IIPL PVPE+VK   +YEE+ KDPMKFLTPD+PDDEI+
Sbjct: 253  DGDSIIPLAPVPERVKPTLSYEEMRKDPMKFLTPDVPDDEIF 294