BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00004255
         (4295 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278608.2| PREDICTED: probable ATP-dependent RNA helica...  1529   0.0  
emb|CBI22072.3| unnamed protein product [Vitis vinifera]             1525   0.0  
ref|XP_002307569.1| predicted protein [Populus trichocarpa] gi|2...  1464   0.0  
ref|NP_001044362.1| Os01g0767700 [Oryza sativa Japonica Group] g...  1436   0.0  
ref|XP_003567152.1| PREDICTED: probable ATP-dependent RNA helica...  1408   0.0  

>ref|XP_002278608.2| PREDICTED: probable ATP-dependent RNA helicase YTHDC2-like [Vitis
            vinifera]
          Length = 1231

 Score = 1529 bits (3959), Expect = 0.0
 Identities = 804/1278 (62%), Positives = 953/1278 (74%), Gaps = 16/1278 (1%)
 Frame = +1

Query: 4    RSGKKKGYSKNQIDENPNIEEPTLIRISKIIDDFFQGTDQVYTFEAGLTNPERAVVHMLC 183
            RSGKK+   K+    NP + E T IRIS+ + +F +  ++VYTFEA LTN ERAVVH +C
Sbjct: 3    RSGKKR--QKDGEQNNPGVAEGTRIRISRALQEFRETHNEVYTFEANLTNHERAVVHEVC 60

Query: 184  RKRGLVSKSTGKGKQRRVSICXXXXXXXXXXXXXXNVTSLAFSEETKEVLRDLFTRYPPS 363
            RK G+ SKS+G+G QRRVS+                   L FSEE KEVL DLFTRYPP 
Sbjct: 61   RKMGMTSKSSGRGSQRRVSVYKTKKKVDTKKEEGNPY--LNFSEEAKEVLLDLFTRYPPD 118

Query: 364  DGEQKGQMLTDHIREVDKKLRKKDDSFYKPSMSKAEIAKEMKALAFRTKNTPKLRQIDGE 543
            D E   QM+ +   + +K   KKDD F +PSM+KAEIAK+++ LA R +  P LRQI   
Sbjct: 119  DKEMVTQMVENGSGKTEKIWGKKDDIFGRPSMNKAEIAKKVELLASRIEEDPHLRQITEG 178

Query: 544  RSKLPIASFREAITSTIETNQVVLISGETGCGKTTQVPQYLLDYMWGKGEACKIICTQPR 723
            RSKLPIASF++ ITSTIE++QVVLISGETGCGKTTQVPQ++LDYMWGKGEACKI+CTQPR
Sbjct: 179  RSKLPIASFKDVITSTIESHQVVLISGETGCGKTTQVPQFVLDYMWGKGEACKIVCTQPR 238

Query: 724  RISATSVAERISYERGEKVGESIGYKIRLETKGGKRSSIMFCTNGILLRVLVGKGTNDSK 903
            RISATSVAERIS+E+GE VG+S+GYKIRLE+KGG+ SSI+FCTNGILLRVLV KGT+  K
Sbjct: 239  RISATSVAERISFEKGENVGDSVGYKIRLESKGGRHSSIIFCTNGILLRVLVSKGTDRLK 298

Query: 904  TASEDISSKESIFGVTHIIVDEIHERDRFSDFILTILRDVLPSHPHLRLILMSATLDAER 1083
              +   ++K  I  +THIIVDEIHERDR+SDF+L ILRD+L S+PHLRLILMSAT+DAER
Sbjct: 299  PEALRKAAKRDISDITHIIVDEIHERDRYSDFMLAILRDMLASYPHLRLILMSATIDAER 358

Query: 1084 FSQYFGGCPVIRVPGFTHPVKNFYLEDILSILKSSESNHLDSLSPNDTVQGADLTEDYTA 1263
            FSQYFGGCP+IRVPGFT+PVK FYLED+LSILKS+ +N+LDS   +  V+   L EDY  
Sbjct: 359  FSQYFGGCPIIRVPGFTYPVKTFYLEDVLSILKSTGNNNLDSTLLSLPVEDPKLIEDYGV 418

Query: 1264 SLDEAINLAWSSDEFDPLLELVSSEATPRILNYQDSLNGASPLMVFAGKGNVSDVCMLLS 1443
            +LDEAINLAWS+DEFDPLL+ VSSE TP++ NYQ S  G +PLMVFAGKG V+DVCM+LS
Sbjct: 419  ALDEAINLAWSNDEFDPLLDFVSSEGTPQVFNYQHSSTGLTPLMVFAGKGRVADVCMMLS 478

Query: 1444 LGADCNLCAKDGKTAVEWAQQENQGEVVEVIKSHLQNVVSKSVEEYDLLEKYLASVNPEH 1623
             GADC+L A D  TA++ A++EN  E  E+IK H++N++S SVEE  LL+KYLA+ NPE 
Sbjct: 479  FGADCHLKANDDTTALDLAERENHREAAEMIKQHMENLLSNSVEEQQLLDKYLATNNPEI 538

Query: 1624 IDIILIERLLRKICTDSDEGAVLIFLPGWDDINKTRERLLASPFFEDTSKFVIIALHSMV 1803
            ID+ L+E+LLRKIC DS +GA+L+FLPGWDDIN+TRE+LL++ FF+D+SKFV+I+LHSMV
Sbjct: 539  IDVALVEQLLRKICNDSKDGAILVFLPGWDDINRTREKLLSASFFKDSSKFVVISLHSMV 598

Query: 1804 PSVEQKKVFKRPPHGSRKIILSTNIAETAVTIDDVVYVIDSGRMKEKSYDPYSNVSTLHS 1983
            PSVEQKKVFKRPP G RKI+LSTNI+ETA+TIDDVVYVIDSGRMKEKSYDPY+NVSTL S
Sbjct: 599  PSVEQKKVFKRPPPGCRKIVLSTNISETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQS 658

Query: 1984 SWVSKASAKQREGRAGRCQPGICYHLYSKTRATSLPEFQVPEIKRMPIEELCLQVKLLDP 2163
            +W+SKASAKQREGRAGRC+PG+CYHLYSK RA SLP+FQVPEIKRMPIEELCLQVKLLDP
Sbjct: 659  AWISKASAKQREGRAGRCRPGVCYHLYSKLRAASLPDFQVPEIKRMPIEELCLQVKLLDP 718

Query: 2164 NCRIVDFLQKTLDPPISETIRNAILVLQDIGALSPDEGLTELGEKLGSLPVHPSTSKMLF 2343
            NC+I DFL+KTLDPP+ ETIRNA++VLQDIGALS DE LTELG+KLGSLPVHP TSKMLF
Sbjct: 719  NCKIEDFLRKTLDPPVFETIRNAVIVLQDIGALSVDEKLTELGKKLGSLPVHPLTSKMLF 778

Query: 2344 FAILMNCLEPALTLACASDYRDPFILPMVPNXXXXXXXXXXXXXSLYGGHSDQLMVIAAY 2523
            FAIL+NCL+PALTLACASDYRDPF LPM+P+             SLYGGHSDQL VIAA+
Sbjct: 779  FAILLNCLDPALTLACASDYRDPFTLPMLPHEKKRATAAKAELASLYGGHSDQLAVIAAF 838

Query: 2524 DCWKRAKDKGQEAQFCSEYFVSSGTMNMLSSMRMQLQRELIHTGFMQEDASQCSLNARDP 2703
            +CWK AK+KGQEAQFCS+YFVSSGTM+ML+ MR QLQ ELI  GF+ ED S CSLNARDP
Sbjct: 839  ECWKSAKEKGQEAQFCSQYFVSSGTMHMLAGMRKQLQTELIRNGFIPEDVSSCSLNARDP 898

Query: 2704 GILHAVLVAGLYPMVGRLLPPLKSGRRVVVETACGAKVRLHPHSSNFKLSFDQSNSQPLV 2883
            GI+HAVLVAGLYPMVGRLLPP KSG+R VVETA GAKVRLHPHS+NFKLSF +S+ +PL+
Sbjct: 899  GIIHAVLVAGLYPMVGRLLPPHKSGKRSVVETASGAKVRLHPHSNNFKLSFKKSDGRPLI 958

Query: 2884 IYDEITRGDGGMYIRNCSIVGPYPLLIHATEMVVAPA--------XXXXXXXXXXXXXXX 3039
            IYDEITRGDGGM+IRNC+++GP PLL+ ATE+VVAP                        
Sbjct: 959  IYDEITRGDGGMHIRNCTVIGPLPLLLLATEIVVAPGKGNDDDDEDCDDDSDGDDIDEDD 1018

Query: 3040 XXXXGIELNT-ISGRQEERIMSSPDNTVSVVIDRWLKFESTALDVAQIYCLRERLRAAIL 3216
                G E N  ++G+Q E+IMSSPDNTV+VV+DRW  FESTALDVAQIYCLRERL AAI 
Sbjct: 1019 SEGDGKEANNKLNGQQGEKIMSSPDNTVAVVVDRWHSFESTALDVAQIYCLRERLTAAIF 1078

Query: 3217 FKVSSLHLLKFSMRTSFLSLHNSPALGASMYAIACILSYDGLSGISPSLKTIGSLTSMKN 3396
            FK +    +              P LGAS+YAIACILSYDGLSGIS SL+++ SLTSM N
Sbjct: 1079 FKATHAREVL------------PPMLGASVYAIACILSYDGLSGISLSLESVDSLTSMVN 1126

Query: 3397 ATEPSGTDS-------KPSAFLRSLLSDAPAPPETSPHYHKPRQMSRSMHRSGTSKPVVE 3555
            ATE   + S        P+ FL++L+S            H  R  S S H          
Sbjct: 1127 ATEIDNSASGRRRMGQNPNNFLKTLMS------------HGTRHKSPSKHHKNKGAENWN 1174

Query: 3556 QPHMQIGIDPYQQTHFQGPLMHPVYVQTQLPGPFMQPIYVPIGLYPVQRTXXXXXXXXXX 3735
             P       PY         M P     Q P    +P +   G                 
Sbjct: 1175 SPPTYNAWSPY---------MPPSLTSNQRPSS-QRPSFSGYG--------------SSM 1210

Query: 3736 XXXXXXRTDSFKRRRGTG 3789
                  R DSFKR+RG G
Sbjct: 1211 HGPYGPRGDSFKRQRGNG 1228


>emb|CBI22072.3| unnamed protein product [Vitis vinifera]
          Length = 1190

 Score = 1525 bits (3949), Expect = 0.0
 Identities = 803/1269 (63%), Positives = 949/1269 (74%), Gaps = 7/1269 (0%)
 Frame = +1

Query: 4    RSGKKKGYSKNQIDENPNIEEPTLIRISKIIDDFFQGTDQVYTFEAGLTNPERAVVHMLC 183
            RSGKK+   K+    NP + E T IRIS+ + +F +  ++VYTFEA LTN ERAVVH +C
Sbjct: 3    RSGKKR--QKDGEQNNPGVAEGTRIRISRALQEFRETHNEVYTFEANLTNHERAVVHEVC 60

Query: 184  RKRGLVSKSTGKGKQRRVSICXXXXXXXXXXXXXXNVTSLAFSEETKEVLRDLFTRYPPS 363
            RK G+ SKS+G+G QRRVS+                   L FSEE KEVL DLFTRYPP 
Sbjct: 61   RKMGMTSKSSGRGSQRRVSVYKTKKKVDTKKEEGNPY--LNFSEEAKEVLLDLFTRYPPD 118

Query: 364  DGEQKGQMLTDHIREVDKKLRKKDDSFYKPSMSKAEIAKEMKALAFRTKNTPKLRQIDGE 543
            D E   QM+ +   + +K   KKDD F +PSM+KAEIAK+++ LA R +  P LRQI   
Sbjct: 119  DKEMVTQMVENGSGKTEKIWGKKDDIFGRPSMNKAEIAKKVELLASRIEEDPHLRQITEG 178

Query: 544  RSKLPIASFREAITSTIETNQVVLISGETGCGKTTQVPQYLLDYMWGKGEACKIICTQPR 723
            RSKLPIASF++ ITSTIE++QVVLISGETGCGKTTQVPQ++LDYMWGKGEACKI+CTQPR
Sbjct: 179  RSKLPIASFKDVITSTIESHQVVLISGETGCGKTTQVPQFVLDYMWGKGEACKIVCTQPR 238

Query: 724  RISATSVAERISYERGEKVGESIGYKIRLETKGGKRSSIMFCTNGILLRVLVGKGTNDSK 903
            RISATSVAERIS+E+GE VG+S+GYKIRLE+KGG+ SSI+FCTNGILLRVLV KGT+   
Sbjct: 239  RISATSVAERISFEKGENVGDSVGYKIRLESKGGRHSSIIFCTNGILLRVLVSKGTD--- 295

Query: 904  TASEDISSKESIFGVTHIIVDEIHERDRFSDFILTILRDVLPSHPHLRLILMSATLDAER 1083
                DIS       +THIIVDEIHERDR+SDF+L ILRD+L S+PHLRLILMSAT+DAER
Sbjct: 296  ---RDISD------ITHIIVDEIHERDRYSDFMLAILRDMLASYPHLRLILMSATIDAER 346

Query: 1084 FSQYFGGCPVIRVPGFTHPVKNFYLEDILSILKSSESNHLDSLSPNDTVQGADLTEDYTA 1263
            FSQYFGGCP+IRVPGFT+PVK FYLED+LSILKS+ +N+LDS   +  V+   L EDY  
Sbjct: 347  FSQYFGGCPIIRVPGFTYPVKTFYLEDVLSILKSTGNNNLDSTLLSLPVEDPKLIEDYGV 406

Query: 1264 SLDEAINLAWSSDEFDPLLELVSSEATPRILNYQDSLNGASPLMVFAGKGNVSDVCMLLS 1443
            +LDEAINLAWS+DEFDPLL+ VSSE TP++ NYQ S  G +PLMVFAGKG V+DVCM+LS
Sbjct: 407  ALDEAINLAWSNDEFDPLLDFVSSEGTPQVFNYQHSSTGLTPLMVFAGKGRVADVCMMLS 466

Query: 1444 LGADCNLCAKDGKTAVEWAQQENQGEVVEVIKSHLQNVVSKSVEEYDLLEKYLASVNPEH 1623
             GADC+L A D  TA++ A++EN  E  E+IK H++N++S SVEE  LL+KYLA+ NPE 
Sbjct: 467  FGADCHLKANDDTTALDLAERENHREAAEMIKQHMENLLSNSVEEQQLLDKYLATNNPEI 526

Query: 1624 IDIILIERLLRKICTDSDEGAVLIFLPGWDDINKTRERLLASPFFEDTSKFVIIALHSMV 1803
            ID+ L+E+LLRKIC DS +GA+L+FLPGWDDIN+TRE+LL++ FF+D+SKFV+I+LHSMV
Sbjct: 527  IDVALVEQLLRKICNDSKDGAILVFLPGWDDINRTREKLLSASFFKDSSKFVVISLHSMV 586

Query: 1804 PSVEQKKVFKRPPHGSRKIILSTNIAETAVTIDDVVYVIDSGRMKEKSYDPYSNVSTLHS 1983
            PSVEQKKVFKRPP G RKI+LSTNI+ETA+TIDDVVYVIDSGRMKEKSYDPY+NVSTL S
Sbjct: 587  PSVEQKKVFKRPPPGCRKIVLSTNISETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQS 646

Query: 1984 SWVSKASAKQREGRAGRCQPGICYHLYSKTRATSLPEFQVPEIKRMPIEELCLQVKLLDP 2163
            +W+SKASAKQREGRAGRC+PG+CYHLYSK RA SLP+FQVPEIKRMPIEELCLQVKLLDP
Sbjct: 647  AWISKASAKQREGRAGRCRPGVCYHLYSKLRAASLPDFQVPEIKRMPIEELCLQVKLLDP 706

Query: 2164 NCRIVDFLQKTLDPPISETIRNAILVLQDIGALSPDEGLTELGEKLGSLPVHPSTSKMLF 2343
            NC+I DFL+KTLDPP+ ETIRNA++VLQDIGALS DE LTELG+KLGSLPVHP TSKMLF
Sbjct: 707  NCKIEDFLRKTLDPPVFETIRNAVIVLQDIGALSVDEKLTELGKKLGSLPVHPLTSKMLF 766

Query: 2344 FAILMNCLEPALTLACASDYRDPFILPMVPNXXXXXXXXXXXXXSLYGGHSDQLMVIAAY 2523
            FAIL+NCL+PALTLACASDYRDPF LPM+P+             SLYGGHSDQL VIAA+
Sbjct: 767  FAILLNCLDPALTLACASDYRDPFTLPMLPHEKKRATAAKAELASLYGGHSDQLAVIAAF 826

Query: 2524 DCWKRAKDKGQEAQFCSEYFVSSGTMNMLSSMRMQLQRELIHTGFMQEDASQCSLNARDP 2703
            +CWK AK+KGQEAQFCS+YFVSSGTM+ML+ MR QLQ ELI  GF+ ED S CSLNARDP
Sbjct: 827  ECWKSAKEKGQEAQFCSQYFVSSGTMHMLAGMRKQLQTELIRNGFIPEDVSSCSLNARDP 886

Query: 2704 GILHAVLVAGLYPMVGRLLPPLKSGRRVVVETACGAKVRLHPHSSNFKLSFDQSNSQPLV 2883
            GI+HAVLVAGLYPMVGRLLPP KSG+R VVETA GAKVRLHPHS+NFKLSF +S+ +PL+
Sbjct: 887  GIIHAVLVAGLYPMVGRLLPPHKSGKRSVVETASGAKVRLHPHSNNFKLSFKKSDGRPLI 946

Query: 2884 IYDEITRGDGGMYIRNCSIVGPYPLLIHATEMVVAPAXXXXXXXXXXXXXXXXXXXGIEL 3063
            IYDEITRGDGGM+IRNC+++GP PLL+ ATE+VVAP                    G   
Sbjct: 947  IYDEITRGDGGMHIRNCTVIGPLPLLLLATEIVVAP--------------------GKAN 986

Query: 3064 NTISGRQEERIMSSPDNTVSVVIDRWLKFESTALDVAQIYCLRERLRAAILFKVSSLHLL 3243
            N ++G+Q E+IMSSPDNTV+VV+DRW  FESTALDVAQIYCLRERL AAI FK +    +
Sbjct: 987  NKLNGQQGEKIMSSPDNTVAVVVDRWHSFESTALDVAQIYCLRERLTAAIFFKATHAREV 1046

Query: 3244 KFSMRTSFLSLHNSPALGASMYAIACILSYDGLSGISPSLKTIGSLTSMKNATEPSGTDS 3423
                          P LGAS+YAIACILSYDGLSGIS SL+++ SLTSM NATE   + S
Sbjct: 1047 L------------PPMLGASVYAIACILSYDGLSGISLSLESVDSLTSMVNATEIDNSAS 1094

Query: 3424 -------KPSAFLRSLLSDAPAPPETSPHYHKPRQMSRSMHRSGTSKPVVEQPHMQIGID 3582
                    P+ FL++L+S            H  R  S S H           P       
Sbjct: 1095 GRRRMGQNPNNFLKTLMS------------HGTRHKSPSKHHKNKGAENWNSPPTYNAWS 1142

Query: 3583 PYQQTHFQGPLMHPVYVQTQLPGPFMQPIYVPIGLYPVQRTXXXXXXXXXXXXXXXXRTD 3762
            PY         M P     Q P    +P +   G                       R D
Sbjct: 1143 PY---------MPPSLTSNQRPSS-QRPSFSGYG--------------SSMHGPYGPRGD 1178

Query: 3763 SFKRRRGTG 3789
            SFKR+RG G
Sbjct: 1179 SFKRQRGNG 1187


>ref|XP_002307569.1| predicted protein [Populus trichocarpa] gi|222857018|gb|EEE94565.1|
            predicted protein [Populus trichocarpa]
          Length = 1195

 Score = 1464 bits (3790), Expect = 0.0
 Identities = 761/1189 (64%), Positives = 910/1189 (76%), Gaps = 14/1189 (1%)
 Frame = +1

Query: 16   KKGYSKNQIDENPNIEEPTLIRISKIIDDFFQGTDQVYTFEAGLTNPERAVVHMLCRKRG 195
            KK   K    +NP + E TLIRISKI++ F    DQVYTFEA L+N +RAVVH +C+K G
Sbjct: 3    KKNQRKAAQQQNPRVAEATLIRISKILERFRAAPDQVYTFEANLSNYDRAVVHEVCKKMG 62

Query: 196  LVSKSTGKGKQRRVSICXXXXXXXXXXXXXXNVTSLAFSEETKEVLRDLFTRYPPSDGEQ 375
            + SKS+G+G QRRVS+               N+T L FS E+K VL +LF+ YPP +G  
Sbjct: 63   MKSKSSGRGGQRRVSV-YKNTKKLDDVKGKENLTHLTFSGESKMVLGELFSNYPPEEGGF 121

Query: 376  KGQMLTDHIREVDKKLRKKDDSFYKPSMSKAEIAKEMKALAFRTKNTPKLRQIDGERSKL 555
              ++   H     K   KKDD F KPS  KAEIAK++++ A R +   KL+QI   RSKL
Sbjct: 122  GAELEGKHSGTAGKTREKKDDIFSKPSRKKAEIAKKVESFASRIEKDVKLKQIVEGRSKL 181

Query: 556  PIASFREAITSTIETNQVVLISGETGCGKTTQVPQYLLDYMWGKGEACKIICTQPRRISA 735
            PIASF + ITSTIE++QVVLISGETGCGKTTQVPQ+LLD+MWGKGEACKI+CTQPRRISA
Sbjct: 182  PIASFMDVITSTIESHQVVLISGETGCGKTTQVPQFLLDHMWGKGEACKIVCTQPRRISA 241

Query: 736  TSVAERISYERGEKVGESIGYKIRLETKGGKRSSIMFCTNGILLRVLVGKGTNDSKTASE 915
             SV+ERISYERGE VG+S+GYKIRLE+KGGK SSI+FCTNG+LLR+LV KG   S+  + 
Sbjct: 242  ISVSERISYERGENVGDSVGYKIRLESKGGKHSSIVFCTNGVLLRILVSKGITGSQNEA- 300

Query: 916  DISSKESIFGVTHIIVDEIHERDRFSDFILTILRDVLPSHPHLRLILMSATLDAERFSQY 1095
            + ++KE+         DEIHERDRFSDF+L I+RD+LPSH HLRLILMSATLDAERFSQY
Sbjct: 301  NTAAKEN---------DEIHERDRFSDFMLAIIRDILPSHSHLRLILMSATLDAERFSQY 351

Query: 1096 FGGCPVIRVPGFTHPVKNFYLEDILSILKSSESNHLDSLSPNDTVQGADLTEDYTASLDE 1275
            FGGCP+IRVPGFT+PVK F+LED+LSIL S + NHLDS  PN   +G +LTE+  A+LDE
Sbjct: 352  FGGCPIIRVPGFTYPVKAFHLEDVLSILNSRDDNHLDSAMPNVLDEGHELTEEDKAALDE 411

Query: 1276 AINLAWSSDEFDPLLELVSSEATPRILNYQDSLNGASPLMVFAGKGNVSDVCMLLSLGAD 1455
            AINLAWS+DEFD LL+LVSSE TP++ +YQ S++G +PLMVFAGKG V DVCMLLSLGA+
Sbjct: 412  AINLAWSNDEFDSLLDLVSSEGTPKVYDYQHSVSGLTPLMVFAGKGRVGDVCMLLSLGAN 471

Query: 1456 CNLCAKDGKTAVEWAQQENQGEVVEVIKSHLQNVVSKSVEEYDLLEKYLASVNPEHIDII 1635
            CNL +K G TA++WA++ENQ E  EVI+ H QN ++ S E+  LL+KY+A++NPE ID++
Sbjct: 472  CNLQSKCGLTALKWAERENQEEAAEVIRKHAQNALADSSEQQQLLDKYMATINPELIDVV 531

Query: 1636 LIERLLRKICTDSDEGAVLIFLPGWDDINKTRERLLASPFFEDTSKFVIIALHSMVPSVE 1815
            LIE+L++KIC DS +GA+L+FLPGWDDIN+TRERLLA+PFF+D SKF+II+LHSMVPSVE
Sbjct: 532  LIEQLIKKICVDSKDGAILVFLPGWDDINRTRERLLANPFFKDGSKFIIISLHSMVPSVE 591

Query: 1816 QKKVFKRPPHGSRKIILSTNIAETAVTIDDVVYVIDSGRMKEKSYDPYSNVSTLHSSWVS 1995
            QKKVFKRPP G RKIILSTNI+E+A+TIDDVVYVIDSGRMKEKSYDPY+NVSTL SSWVS
Sbjct: 592  QKKVFKRPPQGCRKIILSTNISESAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVS 651

Query: 1996 KASAKQREGRAGRCQPGICYHLYSKTRATSLPEFQVPEIKRMPIEELCLQVKLLDPNCRI 2175
            KASAKQREGRAGRCQPGICYHLYSK R +SLP+FQVPEIKRMPIEELCLQVKLLDP+C+I
Sbjct: 652  KASAKQREGRAGRCQPGICYHLYSKLRESSLPDFQVPEIKRMPIEELCLQVKLLDPHCKI 711

Query: 2176 VDFLQKTLDPPISETIRNAILVLQDIGALSPDEGLTELGEKLGSLPVHPSTSKMLFFAIL 2355
              FLQKTLDPP+ ETIRNA+ VL DIGALS DE LTELGEK+G LPVHP TSKM+FFAIL
Sbjct: 712  EAFLQKTLDPPVPETIRNAVAVLLDIGALSVDETLTELGEKIGCLPVHPLTSKMIFFAIL 771

Query: 2356 MNCLEPALTLACASDYRDPFILPMVPNXXXXXXXXXXXXXSLYGGHSDQLMVIAAYDCWK 2535
            MNCL+PALTLACASDYRDPF LPM+PN             SLYGGHSDQL V+AA++CW 
Sbjct: 772  MNCLDPALTLACASDYRDPFTLPMLPNEKKRAAAAKFELASLYGGHSDQLAVLAAFECWN 831

Query: 2536 RAKDKGQEAQFCSEYFVSSGTMNMLSSMRMQLQRELIHTGFMQEDASQCSLNARDPGILH 2715
             AK++GQEA FCS+YF+SS TMNML +MR QLQRELI  GF+ E+ S C+ NA  PGI+H
Sbjct: 832  NAKNRGQEASFCSQYFISSSTMNMLQAMRKQLQRELIRKGFIPENVSSCNTNAHVPGIVH 891

Query: 2716 AVLVAGLYPMVGRLLPPLKSGRRVVVETACGAKVRLHPHSSNFKLSFDQSNSQPLVIYDE 2895
            AVLVAGLYPMVGR LPP K+G+R VVET  GAKVRLHP S NFKLSF +SN  PLVIYDE
Sbjct: 892  AVLVAGLYPMVGRFLPP-KNGKR-VVETTSGAKVRLHPQSLNFKLSFWKSNDYPLVIYDE 949

Query: 2896 ITRGDGGMYIRNCSIVGPYPLLIHATEMVVAPA------XXXXXXXXXXXXXXXXXXXGI 3057
            ITRGDGGM+IRNC+++GP PLL+ ATE+VVAPA                         G+
Sbjct: 950  ITRGDGGMHIRNCTVIGPLPLLLLATEIVVAPAENDDEDDEEDDDDYDSADGAESDEDGM 1009

Query: 3058 ELNTISGRQE-ERIMSSPDNTVSVVIDRWLKFESTALDVAQIYCLRERLRAAILFKVSSL 3234
            E++   G Q+ ERIMSSPDN+V VV+DRWL F +TALDVAQIYCLRE+L AAILFKV+  
Sbjct: 1010 EIHGKLGTQQGERIMSSPDNSVMVVVDRWLYFGATALDVAQIYCLREQLSAAILFKVTHP 1069

Query: 3235 HLLKFSMRTSFLSLHNSPALGASMYAIACILSYDGLSGISPSLKTIGSLTSMKNATE--- 3405
            H                PAL A  Y  ACILS DGLSGIS   +++ SLTSM +ATE   
Sbjct: 1070 H------------KELPPALAAYTYTTACILSNDGLSGISLPGESVESLTSMVHATEIDE 1117

Query: 3406 ----PSGTDSKPSAFLRSLLSDAPAPPETSPHYHKPRQMSRSMHRSGTS 3540
                  G    P++FL SL ++     +T+P YH  R  ++     G++
Sbjct: 1118 SCSGRRGISQNPNSFLSSLKNNT---QQTAPRYHNARSPNQRPTLQGST 1163


>ref|NP_001044362.1| Os01g0767700 [Oryza sativa Japonica Group]
            gi|53792445|dbj|BAD53353.1| putative DEIH-box RNA/DNA
            helicase [Oryza sativa Japonica Group]
            gi|53793557|dbj|BAD53327.1| putative DEIH-box RNA/DNA
            helicase [Oryza sativa Japonica Group]
            gi|113533893|dbj|BAF06276.1| Os01g0767700 [Oryza sativa
            Japonica Group]
          Length = 1223

 Score = 1436 bits (3718), Expect = 0.0
 Identities = 729/1158 (62%), Positives = 885/1158 (76%), Gaps = 11/1158 (0%)
 Frame = +1

Query: 58   IEEPTLIRISKIIDDFFQGTDQVYTFEAGLTNPERAVVHMLCRKRGLVSKSTGKGKQRRV 237
            + E TL+R+SK+++DF     QVY FE G++  ERA +H +CRK G++SKS+G G++R +
Sbjct: 43   VREATLVRVSKVLEDFQASDAQVYKFEPGISKQERAAIHEMCRKMGMISKSSGNGERRCL 102

Query: 238  SICXXXXXXXXXXXXXXNVTSLAFSEETKEVLRDLFTRYPPSDGEQKGQMLTDHIREVDK 417
            S+                 + L FS E + VL+DLF  YPP D E  G  + +   +  K
Sbjct: 103  SV--YKRKQNQGLETEEGPSHLGFSVEARNVLQDLFMHYPPDDAELNGHTVRNSSDKAVK 160

Query: 418  KLRKKDDSFYKPSMSKAEIAKEMKALAFRTKNTPKLRQIDGERSKLPIASFREAITSTIE 597
               K D +F +P++ K +I K+++ LA +   + +LR+I  +RSKLPI+S+++AI+ST+E
Sbjct: 161  IQWKPDGAFCRPALRKPDILKKVEMLASKVNKSEQLRKIVQDRSKLPISSYKDAISSTLE 220

Query: 598  TNQVVLISGETGCGKTTQVPQYLLDYMWGKGEACKIICTQPRRISATSVAERISYERGEK 777
             +QVVLISGETGCGKTTQVPQY+LD+MWGKGE+CKI+CTQPRRISA SVAERIS ERGE 
Sbjct: 221  NHQVVLISGETGCGKTTQVPQYILDHMWGKGESCKIVCTQPRRISAISVAERISAERGES 280

Query: 778  VGESIGYKIRLETKGGKRSSIMFCTNGILLRVLVGKGTNDSKTASEDISSKESIFGVTHI 957
            VG+++GYKIRLE+KGGK SSIMFCTNG+LLR+L+G+ TN SK  ++  S  +++ G+THI
Sbjct: 281  VGDTVGYKIRLESKGGKNSSIMFCTNGVLLRLLIGRVTNISKEQNQKRSFDDAVTGITHI 340

Query: 958  IVDEIHERDRFSDFILTILRDVLPSHPHLRLILMSATLDAERFSQYFGGCPVIRVPGFTH 1137
            IVDEIHERDRFSDF+L ILRD+LP +PHLRL+LMSAT+DAERFS YF GCP I+VPGFTH
Sbjct: 341  IVDEIHERDRFSDFMLAILRDLLPLYPHLRLVLMSATIDAERFSNYFSGCPFIQVPGFTH 400

Query: 1138 PVKNFYLEDILSILKSSESNHLDSLSPNDTVQGADLTEDYTASLDEAINLAWSSDEFDPL 1317
            PVK FYLED+LSIL+S   NHLD  + +D  Q + LT+DY +S+DEAINLA  +DEFDPL
Sbjct: 401  PVKTFYLEDVLSILQSVGDNHLDPTT-DDLKQSSLLTDDYKSSMDEAINLALDNDEFDPL 459

Query: 1318 LELVSSEATPRILNYQDSLNGASPLMVFAGKGNVSDVCMLLSLGADCNLCAKDGKTAVEW 1497
            LEL+S+E    I NYQ S  G +PLMV AGKG V D+CMLLS G DC+    DGK+A+ W
Sbjct: 460  LELISAEQNQEIFNYQHSETGVTPLMVLAGKGQVGDICMLLSFGVDCSTRDHDGKSALGW 519

Query: 1498 AQQENQGEVVEVIKSHLQNVVSKSVEEYDLLEKYLASVNPEHIDIILIERLLRKICTDSD 1677
            A+Q NQ EV EVIK H++   +K  EE +LL KYLA++NPEHID +LIERLLRKIC DS+
Sbjct: 520  AEQGNQQEVCEVIKKHMECGSAKLTEENELLNKYLATINPEHIDTVLIERLLRKICVDSN 579

Query: 1678 EGAVLIFLPGWDDINKTRERLLASPFFEDTSKFVIIALHSMVPSVEQKKVFKRPPHGSRK 1857
            EGA+L+FLPGW+DIN+TRERLLASPFF+D+SKF++++LHSM+PS EQKKVFKRPP GSRK
Sbjct: 580  EGAILVFLPGWEDINQTRERLLASPFFQDSSKFLVLSLHSMIPSSEQKKVFKRPPAGSRK 639

Query: 1858 IILSTNIAETAVTIDDVVYVIDSGRMKEKSYDPYSNVSTLHSSWVSKASAKQREGRAGRC 2037
            IILSTNIAETAVTIDDVV+VIDSGRMKEKSYDPY+NVSTLHSSWVSKA+A+QR+GRAGRC
Sbjct: 640  IILSTNIAETAVTIDDVVFVIDSGRMKEKSYDPYNNVSTLHSSWVSKANARQRQGRAGRC 699

Query: 2038 QPGICYHLYSKTRATSLPEFQVPEIKRMPIEELCLQVKLLDPNCRIVDFLQKTLDPPISE 2217
            QPG CYHLYS+ RA SL E+Q+PEIKRMPIEELCLQVKLLDPNCRI DFL+KTLDPPI E
Sbjct: 700  QPGTCYHLYSRFRAASLLEYQIPEIKRMPIEELCLQVKLLDPNCRIADFLRKTLDPPIPE 759

Query: 2218 TIRNAILVLQDIGALSPDEGLTELGEKLGSLPVHPSTSKMLFFAILMNCLEPALTLACAS 2397
            T+RNAI VLQD+GAL+ DE LTELGEKLGSLPVHPSTSKML F ILMNCL+PALTLACA+
Sbjct: 760  TVRNAITVLQDLGALTQDEQLTELGEKLGSLPVHPSTSKMLLFGILMNCLDPALTLACAA 819

Query: 2398 DYRDPFILPMVPNXXXXXXXXXXXXXSLYGGHSDQLMVIAAYDCWKRAKDKGQEAQFCSE 2577
            DYRDPF+LPM P+             SLYGG+SDQL V+AA DCW+RAKD+GQEAQFCS+
Sbjct: 820  DYRDPFLLPMAPDERKRAAAAKVELASLYGGYSDQLAVVAAMDCWRRAKDRGQEAQFCSK 879

Query: 2578 YFVSSGTMNMLSSMRMQLQRELIHTGFMQEDASQCSLNARDPGILHAVLVAGLYPMVGRL 2757
            YFVSS TMNMLS+MR QLQ EL   GF+  DAS CSLNARDPGI+ AVL+AG YPMVGRL
Sbjct: 880  YFVSSNTMNMLSNMRKQLQNELAQRGFVPVDASACSLNARDPGIIRAVLMAGAYPMVGRL 939

Query: 2758 LPPLKSGRRVVVETACGAKVRLHPHSSNFKLSFDQSNSQPLVIYDEITRGDGGMYIRNCS 2937
            LPP K+ RR V+ETA GAKVRLHPHS NF LSF +++  PLVIYDEITRGDGGMYI+N S
Sbjct: 940  LPPRKNTRRAVIETASGAKVRLHPHSCNFNLSFRKTSGNPLVIYDEITRGDGGMYIKNSS 999

Query: 2938 IVGPYPLLIHATEMVVAPAXXXXXXXXXXXXXXXXXXXGIELNTISGRQEERIMSSPDNT 3117
            +VG YPL+I ATEMVVAP                      E   ++  Q + IMSSPDN+
Sbjct: 1000 VVGSYPLIILATEMVVAPPEDDDSDEEDGDSSED------ETEKVTLGQHKEIMSSPDNS 1053

Query: 3118 VSVVIDRWLKFESTALDVAQIYCLRERLRAAILFKVSSLHLLKFSMRTSFLSLHNSPALG 3297
            VSVVIDRWL+F++TALDVAQIYCLRERL +AILFKV     +              P LG
Sbjct: 1054 VSVVIDRWLRFDATALDVAQIYCLRERLASAILFKVKHPQDVL------------PPDLG 1101

Query: 3298 ASMYAIACILSYDGLSGISPSLKTIGSLTSMKNATEPSGTDSK-----------PSAFLR 3444
            A+MYAIACILSYDGL    P++ T   + + + + + S   S+           P  FL 
Sbjct: 1102 ATMYAIACILSYDGL----PAMITSDDVATSQGSNQSSAESSRFSQGRRVGYIPPGGFLM 1157

Query: 3445 SLLSDAPAPPETSPHYHK 3498
            SLLSD P     +PH+ K
Sbjct: 1158 SLLSDKPL---NAPHFQK 1172


>ref|XP_003567152.1| PREDICTED: probable ATP-dependent RNA helicase YTHDC2 [Brachypodium
            distachyon]
          Length = 1272

 Score = 1408 bits (3644), Expect = 0.0
 Identities = 716/1156 (61%), Positives = 882/1156 (76%), Gaps = 8/1156 (0%)
 Frame = +1

Query: 58   IEEPTLIRISKIIDDFFQGTDQVYTFEAGLTNPERAVVHMLCRKRGLVSKSTGKGKQRRV 237
            + E TL+R++ ++++F     QV+TFEA ++  ERA +H +CRK G++SKS G  ++R +
Sbjct: 93   LSEETLVRVTTVLEEFRASDAQVHTFEANISKQERAAIHEICRKMGMISKSKGYAERRCL 152

Query: 238  SICXXXXXXXXXXXXXXNVTSLAFSEETKEVLRDLFTRYPPSDGEQKGQMLTDHIREVDK 417
            S+                 + L FSEE + VL+DLFT YPP+D E  G+ + +   +  K
Sbjct: 153  SV--YKRKQTQGPDKEEGPSKLGFSEEARNVLQDLFTHYPPTDAELNGEAVKNSSDKAAK 210

Query: 418  KLRKKDDSFYKPSMSKAEIAKEMKALAFRTKNTPKLRQIDGERSKLPIASFREAITSTIE 597
               K D +F +P M K +IAK+++ LA +   + +LR+I  +RSKLPI+SF++ I+ST+E
Sbjct: 211  IQWKTDSAFCRPVMHKHDIAKKVEILASKINESRQLRKIVEDRSKLPISSFKDHISSTLE 270

Query: 598  TNQVVLISGETGCGKTTQVPQYLLDYMWGKGEACKIICTQPRRISATSVAERISYERGEK 777
             NQVVLISGETGCGKTTQVPQY+LD++WGKGE+CKIICTQPRRISA SVAERIS ERGE 
Sbjct: 271  NNQVVLISGETGCGKTTQVPQYILDHVWGKGESCKIICTQPRRISAISVAERISAERGEV 330

Query: 778  VGESIGYKIRLETKGGKRSSIMFCTNGILLRVLVGKGTNDSKTASEDISSKESIFGVTHI 957
            VG+++GYKIRLE+KGGK SSIMFCTNG+LLR+L+G+ TN  K  +   S  +++ G+THI
Sbjct: 331  VGDTVGYKIRLESKGGKNSSIMFCTNGVLLRLLIGRVTNMPKAKNPKRSFDDAVMGITHI 390

Query: 958  IVDEIHERDRFSDFILTILRDVLPSHPHLRLILMSATLDAERFSQYFGGCPVIRVPGFTH 1137
            IVDEIHERDRFSDF+L ILRD+LP +PHL L+LMSAT+DAERFSQYF GCP+I+VPG T+
Sbjct: 391  IVDEIHERDRFSDFMLAILRDLLPVYPHLHLVLMSATIDAERFSQYFNGCPIIQVPGHTY 450

Query: 1138 PVKNFYLEDILSILKSSESNHLDSLSPNDTVQGADLTEDYTASLDEAINLAWSSDEFDPL 1317
            PVK FYLED+LSIL+S   NHL+  + +D  Q + LT+DY +S+DE+I++A ++DEFDPL
Sbjct: 451  PVKIFYLEDVLSILQSVGDNHLNPAT-DDLEQDSILTDDYRSSMDESISMALANDEFDPL 509

Query: 1318 LELVSSEATPRILNYQDSLNGASPLMVFAGKGNVSDVCMLLSLGADCNLCAKDGKTAVEW 1497
            +EL+S E +P I NY+ S +G +PLMVFAGKG + DVCMLLS G DC+    DGK+A++W
Sbjct: 510  IELISVEQSPEIFNYRHSESGVTPLMVFAGKGQIGDVCMLLSFGVDCSARDHDGKSALDW 569

Query: 1498 AQQENQGEVVEVIKSHLQNVVSKSVEEYDLLEKYLASVNPEHIDIILIERLLRKICTDSD 1677
            AQQENQ +V EVIK H+     KS +E +LL +YL ++NPEHID +LIERLLRKIC DS+
Sbjct: 570  AQQENQQQVYEVIKKHMDCGSVKSPQENELLNRYLTTINPEHIDTVLIERLLRKICIDSN 629

Query: 1678 EGAVLIFLPGWDDINKTRERLLASPFFEDTSKFVIIALHSMVPSVEQKKVFKRPPHGSRK 1857
            EGAVL+FLPGW+DIN+TRERL ASP F+D+SKF+I++LHSM+PSVEQKKVFK PP G RK
Sbjct: 630  EGAVLVFLPGWEDINQTRERLFASPLFQDSSKFLILSLHSMIPSVEQKKVFKSPPVGVRK 689

Query: 1858 IILSTNIAETAVTIDDVVYVIDSGRMKEKSYDPYSNVSTLHSSWVSKASAKQREGRAGRC 2037
            IILSTNIAETAVTIDDVV+VIDSG+MKEKSYDPY+NVSTLH+SWVS+ASA+QREGRAGRC
Sbjct: 690  IILSTNIAETAVTIDDVVFVIDSGKMKEKSYDPYNNVSTLHTSWVSRASARQREGRAGRC 749

Query: 2038 QPGICYHLYSKTRATSLPEFQVPEIKRMPIEELCLQVKLLDPNCRIVDFLQKTLDPPISE 2217
            QPG CYHLYS  RA SLPE+Q+PEIKRMPIEELCLQVKLLDPNCRI DFL+KTLDPPI E
Sbjct: 750  QPGTCYHLYSGFRAASLPEYQIPEIKRMPIEELCLQVKLLDPNCRIADFLKKTLDPPIPE 809

Query: 2218 TIRNAILVLQDIGALSPDEGLTELGEKLGSLPVHPSTSKMLFFAILMNCLEPALTLACAS 2397
            T++NAI VLQD+GAL+ DE LT+LGEKLGSLPVHPSTSKML F ILMNCL+PALTLACA+
Sbjct: 810  TVKNAITVLQDLGALTQDEQLTDLGEKLGSLPVHPSTSKMLLFGILMNCLDPALTLACAA 869

Query: 2398 DYRDPFILPMVPNXXXXXXXXXXXXXSLYGGHSDQLMVIAAYDCWKRAKDKGQEAQFCSE 2577
            DYRDPF+LPM P+             SLYGG SDQL V+AA+DCW  AKD+GQEA FCS+
Sbjct: 870  DYRDPFVLPMAPDERKKAAAAKVELASLYGGFSDQLAVVAAFDCWICAKDRGQEALFCSK 929

Query: 2578 YFVSSGTMNMLSSMRMQLQRELIHTGFMQEDASQCSLNARDPGILHAVLVAGLYPMVGRL 2757
            YFV++ TMNMLS+MR QL  EL   GF+  DAS CSLNA+ PGI+ AVLVAG YPMVGRL
Sbjct: 930  YFVAANTMNMLSNMRKQLHSELSQRGFLPADASACSLNAKVPGIISAVLVAGAYPMVGRL 989

Query: 2758 LPPLKSGRRVVVETACGAKVRLHPHSSNFKLSFDQSNSQPLVIYDEITRGDGGMYIRNCS 2937
            LPP ++ +R VVETA GAKVRLHPHS NF LSF++S   PL+IYDEITRGDGGMYI+NCS
Sbjct: 990  LPPRRNCKRAVVETASGAKVRLHPHSCNFNLSFNKSYGNPLMIYDEITRGDGGMYIKNCS 1049

Query: 2938 IVGPYPLLIHATEMVVAPAXXXXXXXXXXXXXXXXXXXGIELNTISGRQEERIMSSPDNT 3117
            +VG YPL++ ATEM VAP                      E NT SG+Q E IMS PDNT
Sbjct: 1050 VVGSYPLVLLATEMAVAPPDDSDEEEGSSEDE-------AEKNT-SGQQNEEIMSLPDNT 1101

Query: 3118 VSVVIDRWLKFESTALDVAQIYCLRERLRAAILFKVSSLHLLKFSMRTSFLSLHNSPALG 3297
            VSV+IDRWL+F++TALD+AQIYCLRERL +AILFKV     +              PALG
Sbjct: 1102 VSVIIDRWLRFDATALDIAQIYCLRERLASAILFKVKHPQDVL------------PPALG 1149

Query: 3298 ASMYAIACILSYDGLSGISPSLKTIGSLTSMKNATEPS-------GTDSKPSAFLRSLLS 3456
            A+MYA+ACILSYDGL G+  S     +  S +++TE S        +   P  FL SLLS
Sbjct: 1150 ATMYAVACILSYDGLPGMVESADLSTNRGSNQSSTEASRFTQGRRASYIPPGGFLMSLLS 1209

Query: 3457 DAPA-PPETSPHYHKP 3501
            D P   P+     H P
Sbjct: 1210 DIPPNAPQFRKSSHHP 1225