BLASTX nr result

ID: Coptis25_contig00004251 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00004251
         (299 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002531482.1| conserved hypothetical protein [Ricinus comm...    86   2e-15
ref|XP_002312348.1| predicted protein [Populus trichocarpa] gi|2...    86   4e-15
ref|XP_002305971.1| predicted protein [Populus trichocarpa] gi|1...    85   5e-15
ref|XP_002312349.1| predicted protein [Populus trichocarpa] gi|2...    83   2e-14
ref|XP_003518820.1| PREDICTED: uncharacterized protein LOC100783...    83   3e-14

>ref|XP_002531482.1| conserved hypothetical protein [Ricinus communis]
           gi|223528909|gb|EEF30906.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 301

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 44/88 (50%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
 Frame = +1

Query: 1   DFTNSNKHSTSVVVGKWYCPFVFVKEIGLVKDQMESSLYYVMTLEQCWEEIFSCE--XXX 174
           DF  S+K S SVVVG WYCPFVF++E   +K+QM+ S+ Y MTLEQ WEEI+S E     
Sbjct: 207 DFPISSKISPSVVVGTWYCPFVFIREEARIKEQMKKSMLYKMTLEQHWEEIYSWENGNNG 266

Query: 175 XXXXXXXXXXXQKEVNSLFGVEAMKDDT 258
                      Q+E++ +FG+EA+KDDT
Sbjct: 267 SNIDLIVNANVQREMDFVFGMEAIKDDT 294


>ref|XP_002312348.1| predicted protein [Populus trichocarpa] gi|222852168|gb|EEE89715.1|
           predicted protein [Populus trichocarpa]
          Length = 392

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 43/98 (43%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
 Frame = +1

Query: 1   DFTNSNKHSTSVVVGKWYCPFVFVKEIGLVKDQMESSLYYVMTLEQCWEEIFSCE-XXXX 177
           +F  S + ST VV GKWYCPF+F+KE  ++KDQM+ S YY MTLEQ WE+IF+CE     
Sbjct: 205 NFPLSQRCSTPVVAGKWYCPFMFIKEGTVLKDQMKYSTYYEMTLEQQWEQIFACENMYNE 264

Query: 178 XXXXXXXXXXQKEVNSLFGVEAMKDDTHARDGTIWYNN 291
                     + EV ++ G EA+ D     DG +W+ +
Sbjct: 265 GNTVTVDVAVECEVVTVGGTEAVADQKDVVDGVMWFRS 302


>ref|XP_002305971.1| predicted protein [Populus trichocarpa] gi|118484298|gb|ABK94028.1|
           unknown [Populus trichocarpa]
           gi|222848935|gb|EEE86482.1| predicted protein [Populus
           trichocarpa]
          Length = 392

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 41/97 (42%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
 Frame = +1

Query: 1   DFTNSNKHSTSVVVGKWYCPFVFVKEIGLVKDQMESSLYYVMTLEQCWEEIFSCE--XXX 174
           DF  S K S+ V VG+WYCPFV V+E   +++QM+ ++ Y MTLEQ W+EI+SCE     
Sbjct: 203 DFPLSTKSSSRVTVGRWYCPFVLVREEPRIREQMKRTMLYSMTLEQYWKEIYSCENANNE 262

Query: 175 XXXXXXXXXXXQKEVNSLFGVEAMKDDTHARDGTIWY 285
                      Q+E++ +FG+EA +D   +  G IWY
Sbjct: 263 AESTIMVSVNVQREMDLVFGMEATRDGGVSHGGVIWY 299


>ref|XP_002312349.1| predicted protein [Populus trichocarpa] gi|222852169|gb|EEE89716.1|
           predicted protein [Populus trichocarpa]
          Length = 384

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 43/98 (43%), Positives = 60/98 (61%), Gaps = 1/98 (1%)
 Frame = +1

Query: 4   FTNSNKHSTSVVVGKWYCPFVFVKEIGLVKDQMESSLYYVMTLEQCWEEIFSCE-XXXXX 180
           F  S +   SVVVGKWYCPF+F+KE G +KDQ+ +S YY MTLEQ WE+IF+CE      
Sbjct: 201 FPLSQRSCASVVVGKWYCPFMFIKE-GKLKDQLIASRYYEMTLEQRWEQIFACENSVSEG 259

Query: 181 XXXXXXXXXQKEVNSLFGVEAMKDDTHARDGTIWYNNA 294
                    Q+EV ++ G E   D+ +  DG +W+ ++
Sbjct: 260 NSVIVDAVVQREVIAVAGREVEPDERNLVDGIMWFRSS 297


>ref|XP_003518820.1| PREDICTED: uncharacterized protein LOC100783984 [Glycine max]
          Length = 396

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 43/99 (43%), Positives = 61/99 (61%), Gaps = 3/99 (3%)
 Frame = +1

Query: 4   FTNSNKHSTSVVVGKWYCPFVFVKE--IGLVKDQMESSLYYVMTLEQCWEEIFSCE-XXX 174
           F+ + K S SVVVGKWYCPF+F+KE     +K++M  S++Y MTLEQ WE+IFSCE    
Sbjct: 209 FSLAKKSSDSVVVGKWYCPFMFIKEGTHKTLKEEMRKSMFYEMTLEQKWEQIFSCENEYG 268

Query: 175 XXXXXXXXXXXQKEVNSLFGVEAMKDDTHARDGTIWYNN 291
                      QKEV  + G EA+ ++    +G +W+N+
Sbjct: 269 MGNTVNVDVVVQKEVVVIAGWEAVINEMDIAEGFVWFNS 307


Top