BLASTX nr result
ID: Coptis25_contig00004243
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00004243
(1355 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567527.1| Tryptophan RNA-binding attenuator protein-like ... 213 e-105
gb|AAM63696.1| unknown [Arabidopsis thaliana] 213 e-105
ref|XP_002868070.1| hypothetical protein ARALYDRAFT_493136 [Arab... 210 e-103
gb|ABD65092.1| hypothetical protein 31.t00054 [Brassica oleracea] 213 e-102
ref|NP_001154247.1| Tryptophan RNA-binding attenuator protein-li... 213 7e-91
>ref|NP_567527.1| Tryptophan RNA-binding attenuator protein-like protein [Arabidopsis
thaliana] gi|28393695|gb|AAO42260.1| unknown protein
[Arabidopsis thaliana] gi|28973435|gb|AAO64042.1|
unknown protein [Arabidopsis thaliana]
gi|332658487|gb|AEE83887.1| Tryptophan RNA-binding
attenuator protein-like protein [Arabidopsis thaliana]
Length = 285
Score = 213 bits (543), Expect(2) = e-105
Identities = 104/138 (75%), Positives = 117/138 (84%)
Frame = +3
Query: 159 STPFQPYVYQSPQAAVIPFQILGGEAQIVQIMLKPQEKVIAKPGSMCYMSGSIQMENVYL 338
STPFQPYVYQS + + PFQILGGEAQ+VQIMLKPQEKVIAKPGSMCYMSGSI+M+N Y
Sbjct: 7 STPFQPYVYQSQEDTITPFQILGGEAQVVQIMLKPQEKVIAKPGSMCYMSGSIEMDNTYT 66
Query: 339 HEHEGGMWQWLFGKSASSIVFYNTGGIDGFVGIAAPSLARILPIDLAVFGGEVLCQPDAF 518
E E G+ QW+ GKS SSIV NTG DGFVGIAAPSLARILP+DLA+FGG++LCQPDAF
Sbjct: 67 PEQEVGVVQWILGKSVSSIVLRNTGQNDGFVGIAAPSLARILPLDLAMFGGDILCQPDAF 126
Query: 519 LCSVNEVTVTNLVDQRAR 572
LCSV++V V N V QR R
Sbjct: 127 LCSVHDVKVVNTVYQRHR 144
Score = 197 bits (501), Expect(2) = e-105
Identities = 99/142 (69%), Positives = 120/142 (84%), Gaps = 2/142 (1%)
Frame = +1
Query: 664 RARNVVT-GPEGILRQKLTGQGLAFIAAGGSVVQKNLDVGEVLVVDAACIVAMTATINFQ 840
RARN+ G EG+LRQ+L+GQGLAFI AGGSVVQKNL+VGEVL +D +CI A+T +INFQ
Sbjct: 144 RARNIAAAGAEGVLRQRLSGQGLAFIIAGGSVVQKNLEVGEVLTIDVSCIAALTPSINFQ 203
Query: 841 VKYNG-PMRRVVFGVDNLVTGVLTGPGIVFIQSLPFYRFSQRIARAVTSPSMRENPKFFM 1017
+KYN P+RR VFG DN+VT LTGPGIVFIQSLPF+R SQRIAR+VTSP+MRENP+ +
Sbjct: 204 IKYNAAPVRRAVFGGDNVVTATLTGPGIVFIQSLPFHRLSQRIARSVTSPNMRENPRLLV 263
Query: 1018 QIAVFFVLAYVMIVSSLFLTDV 1083
QI +F LAYV+IVSSL LT++
Sbjct: 264 QIGLFIFLAYVVIVSSLILTEM 285
>gb|AAM63696.1| unknown [Arabidopsis thaliana]
Length = 285
Score = 213 bits (542), Expect(2) = e-105
Identities = 104/138 (75%), Positives = 117/138 (84%)
Frame = +3
Query: 159 STPFQPYVYQSPQAAVIPFQILGGEAQIVQIMLKPQEKVIAKPGSMCYMSGSIQMENVYL 338
STPFQPYVYQS + + PFQILGGEAQ+VQIMLKPQEKVIAKPGSMCYMSGSI+M+N Y
Sbjct: 7 STPFQPYVYQSQEDTITPFQILGGEAQVVQIMLKPQEKVIAKPGSMCYMSGSIEMDNTYT 66
Query: 339 HEHEGGMWQWLFGKSASSIVFYNTGGIDGFVGIAAPSLARILPIDLAVFGGEVLCQPDAF 518
E E G+ QW+ GKS SSIV NTG DGFVGIAAPSLARILP+DLA+FGG++LCQPDAF
Sbjct: 67 PEQEVGVVQWILGKSVSSIVLRNTGQNDGFVGIAAPSLARILPLDLAMFGGDILCQPDAF 126
Query: 519 LCSVNEVTVTNLVDQRAR 572
LCSV++V V N V QR R
Sbjct: 127 LCSVHDVKVVNSVYQRHR 144
Score = 195 bits (496), Expect(2) = e-105
Identities = 98/142 (69%), Positives = 119/142 (83%), Gaps = 2/142 (1%)
Frame = +1
Query: 664 RARNVVT-GPEGILRQKLTGQGLAFIAAGGSVVQKNLDVGEVLVVDAACIVAMTATINFQ 840
RARN+ G EG+LRQ+L+GQGLAFI AGGSVVQKNL+VGE L +D +CI A+T +INFQ
Sbjct: 144 RARNIAAAGAEGVLRQRLSGQGLAFIIAGGSVVQKNLEVGEFLTIDVSCIAALTPSINFQ 203
Query: 841 VKYNG-PMRRVVFGVDNLVTGVLTGPGIVFIQSLPFYRFSQRIARAVTSPSMRENPKFFM 1017
+KYN P+RR VFG DN+VT LTGPGIVFIQSLPF+R SQRIAR+VTSP+MRENP+ +
Sbjct: 204 IKYNAAPVRRAVFGGDNVVTATLTGPGIVFIQSLPFHRLSQRIARSVTSPNMRENPRLLV 263
Query: 1018 QIAVFFVLAYVMIVSSLFLTDV 1083
QI +F LAYV+IVSSL LT++
Sbjct: 264 QIGLFIFLAYVVIVSSLILTEM 285
>ref|XP_002868070.1| hypothetical protein ARALYDRAFT_493136 [Arabidopsis lyrata subsp.
lyrata] gi|297313906|gb|EFH44329.1| hypothetical protein
ARALYDRAFT_493136 [Arabidopsis lyrata subsp. lyrata]
Length = 285
Score = 210 bits (534), Expect(2) = e-103
Identities = 103/138 (74%), Positives = 116/138 (84%)
Frame = +3
Query: 159 STPFQPYVYQSPQAAVIPFQILGGEAQIVQIMLKPQEKVIAKPGSMCYMSGSIQMENVYL 338
STPFQPYVYQS + + PFQILGGEAQ+VQIMLKPQEKVIAKPGSMCYMSGSIQM+N Y
Sbjct: 7 STPFQPYVYQSQEDTITPFQILGGEAQVVQIMLKPQEKVIAKPGSMCYMSGSIQMDNNYT 66
Query: 339 HEHEGGMWQWLFGKSASSIVFYNTGGIDGFVGIAAPSLARILPIDLAVFGGEVLCQPDAF 518
E E G+ QW+ GKS SSIV N G DGFVGIAAPSLARILP+DLA+FGG++LCQPDAF
Sbjct: 67 PEQEVGVVQWILGKSVSSIVLRNNGQNDGFVGIAAPSLARILPLDLAMFGGDILCQPDAF 126
Query: 519 LCSVNEVTVTNLVDQRAR 572
LCSV++V V N + QR R
Sbjct: 127 LCSVHDVKVVNSLYQRHR 144
Score = 194 bits (494), Expect(2) = e-103
Identities = 99/142 (69%), Positives = 118/142 (83%), Gaps = 2/142 (1%)
Frame = +1
Query: 664 RARNVV-TGPEGILRQKLTGQGLAFIAAGGSVVQKNLDVGEVLVVDAACIVAMTATINFQ 840
RARN+ G EG LRQ+L+GQGLAFI AGGSVVQKNL+VGEVL D +CI A+T +INFQ
Sbjct: 144 RARNIAQAGAEGFLRQRLSGQGLAFIIAGGSVVQKNLEVGEVLTTDVSCIAALTPSINFQ 203
Query: 841 VKYNG-PMRRVVFGVDNLVTGVLTGPGIVFIQSLPFYRFSQRIARAVTSPSMRENPKFFM 1017
+KYN P+RR VFG +NLVT LTGPGIVFIQSLPF+R SQRIAR+VTSP+MRENP+ +
Sbjct: 204 IKYNAAPVRRAVFGGENLVTATLTGPGIVFIQSLPFHRLSQRIARSVTSPNMRENPRLLV 263
Query: 1018 QIAVFFVLAYVMIVSSLFLTDV 1083
QI +F LAYV+IVSSL LT++
Sbjct: 264 QIGLFIFLAYVVIVSSLILTEM 285
>gb|ABD65092.1| hypothetical protein 31.t00054 [Brassica oleracea]
Length = 285
Score = 213 bits (542), Expect(2) = e-102
Identities = 104/138 (75%), Positives = 117/138 (84%)
Frame = +3
Query: 159 STPFQPYVYQSPQAAVIPFQILGGEAQIVQIMLKPQEKVIAKPGSMCYMSGSIQMENVYL 338
STPFQPYVYQS + V PFQILGGEAQ+VQIMLKPQEKVIAKPGSMCYMSGSI+MEN Y
Sbjct: 7 STPFQPYVYQSQEDTVTPFQILGGEAQVVQIMLKPQEKVIAKPGSMCYMSGSIEMENTYT 66
Query: 339 HEHEGGMWQWLFGKSASSIVFYNTGGIDGFVGIAAPSLARILPIDLAVFGGEVLCQPDAF 518
E E G+ QW+ GKS SS++ NTG DGFVGIAAPSLARILP+DLA+FGG++LCQPDAF
Sbjct: 67 PEQEVGVVQWVLGKSVSSVLLRNTGQTDGFVGIAAPSLARILPMDLAMFGGDILCQPDAF 126
Query: 519 LCSVNEVTVTNLVDQRAR 572
LCSV++V V N V QR R
Sbjct: 127 LCSVHDVKVVNSVYQRHR 144
Score = 187 bits (476), Expect(2) = e-102
Identities = 95/142 (66%), Positives = 116/142 (81%), Gaps = 2/142 (1%)
Frame = +1
Query: 664 RARNVVT-GPEGILRQKLTGQGLAFIAAGGSVVQKNLDVGEVLVVDAACIVAMTATINFQ 840
RARN+ G E LRQ+L+GQGLAFI AGGSVVQKNL+VGEVL +D +CI A+T INF+
Sbjct: 144 RARNIAAAGAEVFLRQRLSGQGLAFITAGGSVVQKNLEVGEVLTIDVSCIAALTPPINFR 203
Query: 841 VKYNG-PMRRVVFGVDNLVTGVLTGPGIVFIQSLPFYRFSQRIARAVTSPSMRENPKFFM 1017
+ Y+ P+RR VFG DN+VT LTGPGIVFIQSLPF+R SQRIAR+VTSP+MRENP+F +
Sbjct: 204 INYHAAPVRRAVFGGDNVVTATLTGPGIVFIQSLPFHRLSQRIARSVTSPNMRENPRFLV 263
Query: 1018 QIAVFFVLAYVMIVSSLFLTDV 1083
QI +F LAYV+I SSL LT++
Sbjct: 264 QIGLFLFLAYVVIASSLILTEM 285
>ref|NP_001154247.1| Tryptophan RNA-binding attenuator protein-like protein [Arabidopsis
thaliana] gi|332658489|gb|AEE83889.1| Tryptophan
RNA-binding attenuator protein-like protein [Arabidopsis
thaliana]
Length = 273
Score = 213 bits (543), Expect(2) = 7e-91
Identities = 104/138 (75%), Positives = 117/138 (84%)
Frame = +3
Query: 159 STPFQPYVYQSPQAAVIPFQILGGEAQIVQIMLKPQEKVIAKPGSMCYMSGSIQMENVYL 338
STPFQPYVYQS + + PFQILGGEAQ+VQIMLKPQEKVIAKPGSMCYMSGSI+M+N Y
Sbjct: 7 STPFQPYVYQSQEDTITPFQILGGEAQVVQIMLKPQEKVIAKPGSMCYMSGSIEMDNTYT 66
Query: 339 HEHEGGMWQWLFGKSASSIVFYNTGGIDGFVGIAAPSLARILPIDLAVFGGEVLCQPDAF 518
E E G+ QW+ GKS SSIV NTG DGFVGIAAPSLARILP+DLA+FGG++LCQPDAF
Sbjct: 67 PEQEVGVVQWILGKSVSSIVLRNTGQNDGFVGIAAPSLARILPLDLAMFGGDILCQPDAF 126
Query: 519 LCSVNEVTVTNLVDQRAR 572
LCSV++V V N V QR R
Sbjct: 127 LCSVHDVKVVNTVYQRHR 144
Score = 148 bits (374), Expect(2) = 7e-91
Identities = 76/116 (65%), Positives = 90/116 (77%), Gaps = 1/116 (0%)
Frame = +1
Query: 664 RARNVVTGPEGILRQKLTGQGLAFIAAGGSVVQKNLDVGEVLVVDAACIVAMTATINFQV 843
RARN+ +GLAFI AGGSVVQKNL+VGEVL +D +CI A+T +INFQ+
Sbjct: 144 RARNIAAAG---------AEGLAFIIAGGSVVQKNLEVGEVLTIDVSCIAALTPSINFQI 194
Query: 844 KYNG-PMRRVVFGVDNLVTGVLTGPGIVFIQSLPFYRFSQRIARAVTSPSMRENPK 1008
KYN P+RR VFG DN+VT LTGPGIVFIQSLPF+R SQRIAR+VTSP+MRENP+
Sbjct: 195 KYNAAPVRRAVFGGDNVVTATLTGPGIVFIQSLPFHRLSQRIARSVTSPNMRENPR 250