BLASTX nr result

ID: Coptis25_contig00004213 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00004213
         (1147 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN83511.1| hypothetical protein VITISV_035079 [Vitis vinifera]   344   2e-92
gb|AFD63133.1| senescence-associated protein [Vitis quinquangula...   340   4e-91
ref|XP_002271684.1| PREDICTED: uncharacterized protein LOC100243...   339   9e-91
gb|ACF06508.1| senescence-associated protein [Elaeis guineensis]      337   3e-90
gb|ABK23290.1| unknown [Picea sitchensis]                             328   1e-87

>emb|CAN83511.1| hypothetical protein VITISV_035079 [Vitis vinifera]
          Length = 272

 Score =  344 bits (883), Expect = 2e-92
 Identities = 167/259 (64%), Positives = 189/259 (72%), Gaps = 3/259 (1%)
 Frame = -3

Query: 1085 VFLLLSIAILSTGIWLTARASTDCEKFLDKPLIVLGVFLLVVSLAGFIGACCRVSWILWX 906
            +  LLS+ IL  GIWL+ RASTDCEKFL+KP+I LGVFL+VVSLAG IGACCRVSW+LW 
Sbjct: 15   ITFLLSVPILGAGIWLSHRASTDCEKFLEKPVIALGVFLMVVSLAGLIGACCRVSWLLWV 74

Query: 905  XXXXXXXXXXXXXXFTIFAFVVTNKGAGEVVSERGYKEYRLGDYSNWLQKRVGNGKNWRR 726
                          FTIFAFVVTNKGAGEV+S +GYKEYRLGDYSNWLQKRV N KNW R
Sbjct: 75   YLLVMFLLIVLLFCFTIFAFVVTNKGAGEVLSGKGYKEYRLGDYSNWLQKRVNNTKNWNR 134

Query: 725  IRSCLEDSKVCKSLSDD-ANVDFQAYIKKSLSPLQSGCCKPPTECNFTYVNATVWNTPAT 549
            I+SCL+D KVC+SLS D      Q +  + LSP+QSGCCKP  +C FTYV  T WNT   
Sbjct: 135  IKSCLQDGKVCQSLSQDKVGETVQQFYAEQLSPIQSGCCKPSNDCGFTYVTPTYWNT-TN 193

Query: 548  GTNSTNPDCATWTN--QNLCFGCQSCKAGVLDNLKKDWKKVAXXXXXXXXXXIVVYSIGC 375
               STN DC++W N    LCF CQ+CKAGVLDNLK+DWKKVA          I+VYSIGC
Sbjct: 194  APASTNSDCSSWNNDPNTLCFNCQACKAGVLDNLKRDWKKVAIINIIFLVFLIIVYSIGC 253

Query: 374  CAFRNNREDNAYPRWKGHP 318
            CAFRNNREDNA PRWK +P
Sbjct: 254  CAFRNNREDNAQPRWKPYP 272


>gb|AFD63133.1| senescence-associated protein [Vitis quinquangularis]
          Length = 272

 Score =  340 bits (872), Expect = 4e-91
 Identities = 165/259 (63%), Positives = 188/259 (72%), Gaps = 3/259 (1%)
 Frame = -3

Query: 1085 VFLLLSIAILSTGIWLTARASTDCEKFLDKPLIVLGVFLLVVSLAGFIGACCRVSWILWX 906
            +  LLS+ IL  GIWL+ RASTDCEKFL+KP+I LGVFL+VVSLAG IGACCRVSW+LW 
Sbjct: 15   ITFLLSVPILGAGIWLSHRASTDCEKFLEKPVIALGVFLMVVSLAGLIGACCRVSWLLWV 74

Query: 905  XXXXXXXXXXXXXXFTIFAFVVTNKGAGEVVSERGYKEYRLGDYSNWLQKRVGNGKNWRR 726
                          FTIFAFVVTNKGAGEV+S +GYKEYRLGDYSNWLQKRV N KNW R
Sbjct: 75   YLLVMFLLIVLLFCFTIFAFVVTNKGAGEVLSGKGYKEYRLGDYSNWLQKRVNNTKNWNR 134

Query: 725  IRSCLEDSKVCKSLSDD-ANVDFQAYIKKSLSPLQSGCCKPPTECNFTYVNATVWNTPAT 549
            I+SCL+D KVC+SLS D      + +  + LSP+QSGCCKP  +C FTYV  T W T   
Sbjct: 135  IKSCLQDGKVCQSLSQDKVGETVEQFYAEQLSPIQSGCCKPSNDCGFTYVTPTNW-TSTN 193

Query: 548  GTNSTNPDCATWTNQN--LCFGCQSCKAGVLDNLKKDWKKVAXXXXXXXXXXIVVYSIGC 375
               STN DC++W N    LCF CQ+CKAGVLDNLK+DWKKVA          I+VYSIGC
Sbjct: 194  AATSTNSDCSSWNNDPSILCFNCQACKAGVLDNLKRDWKKVAIINIIFLVFLIIVYSIGC 253

Query: 374  CAFRNNREDNAYPRWKGHP 318
            CAFRNNREDNA PRWK +P
Sbjct: 254  CAFRNNREDNAQPRWKPYP 272


>ref|XP_002271684.1| PREDICTED: uncharacterized protein LOC100243286 [Vitis vinifera]
          Length = 272

 Score =  339 bits (869), Expect = 9e-91
 Identities = 165/259 (63%), Positives = 187/259 (72%), Gaps = 3/259 (1%)
 Frame = -3

Query: 1085 VFLLLSIAILSTGIWLTARASTDCEKFLDKPLIVLGVFLLVVSLAGFIGACCRVSWILWX 906
            +  LLS+ IL  GIWL+ RASTDCEKFL+KP+I LGVFL+VVSLAG IGACCRVSW+LW 
Sbjct: 15   ITFLLSVPILGAGIWLSHRASTDCEKFLEKPVIALGVFLMVVSLAGLIGACCRVSWLLWV 74

Query: 905  XXXXXXXXXXXXXXFTIFAFVVTNKGAGEVVSERGYKEYRLGDYSNWLQKRVGNGKNWRR 726
                          FTIFAFVVTNKGAGEV+S +GYKEYRLGDYSNWLQKRV N KNW R
Sbjct: 75   YLLVMFLLIVLLFCFTIFAFVVTNKGAGEVLSGKGYKEYRLGDYSNWLQKRVNNTKNWNR 134

Query: 725  IRSCLEDSKVCKSLSDD-ANVDFQAYIKKSLSPLQSGCCKPPTECNFTYVNATVWNTPAT 549
            I+SCL+D KVC+SLS D      Q +  + LSP+QSGCCKP  +C FTYV  T W T   
Sbjct: 135  IKSCLQDGKVCQSLSQDKVGETVQQFYAEQLSPIQSGCCKPSNDCGFTYVTPTNW-TSTN 193

Query: 548  GTNSTNPDCATWTNQN--LCFGCQSCKAGVLDNLKKDWKKVAXXXXXXXXXXIVVYSIGC 375
                TN DC+ W N+   LCF CQ+CKAGVLDNLK+DWKKVA          I+VYSIGC
Sbjct: 194  AATYTNSDCSLWNNEPSILCFNCQACKAGVLDNLKRDWKKVAIINIIFLVFLIIVYSIGC 253

Query: 374  CAFRNNREDNAYPRWKGHP 318
            CAFRNNREDNA PRWK +P
Sbjct: 254  CAFRNNREDNAQPRWKPYP 272


>gb|ACF06508.1| senescence-associated protein [Elaeis guineensis]
          Length = 270

 Score =  337 bits (865), Expect = 3e-90
 Identities = 166/269 (61%), Positives = 191/269 (71%), Gaps = 2/269 (0%)
 Frame = -3

Query: 1118 ILNNGIQTSLGVFLLLSIAILSTGIWLTARASTDCEKFLDKPLIVLGVFLLVVSLAGFIG 939
            + NN I     +  LLSI I+  GIWL  R STDCEKFL  P+I +GVFL+VVSLAG +G
Sbjct: 4    VSNNLIGILNFLTFLLSIPIVGGGIWLATRGSTDCEKFLQGPVIAVGVFLMVVSLAGLVG 63

Query: 938  ACCRVSWILWXXXXXXXXXXXXXXXFTIFAFVVTNKGAGEVVSERGYKEYRLGDYSNWLQ 759
            ACCRV+W+LW               FT+FAFVVTNKGAGEVVS RGYKEYRLGDYSNWLQ
Sbjct: 64   ACCRVTWLLWVYLFVMFLLIVLLFCFTVFAFVVTNKGAGEVVSNRGYKEYRLGDYSNWLQ 123

Query: 758  KRVGNGKNWRRIRSCLEDSKVCKSLSDDANVDFQAYIKKSLSPLQSGCCKPPTECNFTYV 579
            KRV N K W RI+SC++DSKVC+SL  + N  FQ +   +LSP+QSGCCKPPTECNFTY 
Sbjct: 124  KRVNNSKTWARIQSCIQDSKVCQSL-QEKNQTFQQFANDNLSPIQSGCCKPPTECNFTYQ 182

Query: 578  NATVWNTPATGTNSTNPDCATWTNQN--LCFGCQSCKAGVLDNLKKDWKKVAXXXXXXXX 405
            + T W   +T +NS+NPDC  W N    LC+ CQSCKAGVL N+K DWKKVA        
Sbjct: 183  SETSW-AKSTISNSSNPDCNAWDNNPSILCYNCQSCKAGVLANIKNDWKKVAIINIIVLV 241

Query: 404  XXIVVYSIGCCAFRNNREDNAYPRWKGHP 318
              IVVYSIGCCAFRNNR D+AY  WKGHP
Sbjct: 242  FLIVVYSIGCCAFRNNRRDDAYGGWKGHP 270


>gb|ABK23290.1| unknown [Picea sitchensis]
          Length = 269

 Score =  328 bits (842), Expect = 1e-87
 Identities = 161/268 (60%), Positives = 193/268 (72%), Gaps = 3/268 (1%)
 Frame = -3

Query: 1112 NNGIQTSLGVFLLLSIAILSTGIWLTARASTDCEKFLDKPLIVLGVFLLVVSLAGFIGAC 933
            NN I     +  +LSI IL  GIWL  RASTDCEKFL+KP+I +GVFL+VVS+AG IGAC
Sbjct: 6    NNVIGILNFITFVLSIPILGGGIWLANRASTDCEKFLEKPVIAIGVFLMVVSIAGLIGAC 65

Query: 932  CRVSWILWXXXXXXXXXXXXXXXFTIFAFVVTNKGAGEVVSERGYKEYRLGDYSNWLQKR 753
            CRVSW+LW               FT+FAFVVTNKG GEVVS RGYKEYRLGDYSNWLQKR
Sbjct: 66   CRVSWLLWVYLLAMFLLIVLLFCFTVFAFVVTNKGVGEVVSNRGYKEYRLGDYSNWLQKR 125

Query: 752  VGNGKNWRRIRSCLEDSKVCKSLSDDA-NVDFQAYIKKSLSPLQSGCCKPPTECNFTYVN 576
            V N  NW+RIRSC+ D+KVCKSL+D++ N    A+ K++LSP+QSGCCKPPT C FTYV+
Sbjct: 126  VENTANWKRIRSCIIDAKVCKSLADESVNKAADAFYKENLSPIQSGCCKPPTSCGFTYVS 185

Query: 575  ATVWNTPATGTNSTNPDCATWTN--QNLCFGCQSCKAGVLDNLKKDWKKVAXXXXXXXXX 402
              +WN   T T+++N DC +W N    LC+ C SCKAGVL NLK DW+KVA         
Sbjct: 186  PIMWN--GTATDTSNTDCNSWNNTQSQLCYDCNSCKAGVLQNLKHDWRKVAAVNIVMLIF 243

Query: 401  XIVVYSIGCCAFRNNREDNAYPRWKGHP 318
             ++VYS+GCCAFRNNR DN+Y   KG+P
Sbjct: 244  LVIVYSVGCCAFRNNRHDNSY--GKGYP 269


Top