BLASTX nr result
ID: Coptis25_contig00004119
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00004119
(2115 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002281113.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 789 0.0
ref|XP_002267581.2| PREDICTED: DEAD-box ATP-dependent RNA helica... 788 0.0
ref|XP_002283489.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 772 0.0
ref|XP_003531232.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 764 0.0
ref|XP_002879990.1| hypothetical protein ARALYDRAFT_483345 [Arab... 763 0.0
>ref|XP_002281113.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Vitis
vinifera]
Length = 622
Score = 789 bits (2038), Expect = 0.0
Identities = 390/449 (86%), Positives = 418/449 (93%)
Frame = +3
Query: 54 RRREANPFGDDGETNNVEPTFGEQENFVINFDAYEDIPVETSGDNVPPPVNTFAEIDLGE 233
R RE NPFGDD +N EP F EQEN INFDAYEDIPVETSGDNVPPPVNTFAEIDLGE
Sbjct: 116 RDREVNPFGDD---DNAEPAFSEQENTGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGE 172
Query: 234 ALNLNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGILNGKYAQ 413
ALN NIRRCKYVKPTPVQRHAIPISL G+DLMACAQTGSGKTAAFCFPIISGI+ G++AQ
Sbjct: 173 ALNQNIRRCKYVKPTPVQRHAIPISLSGKDLMACAQTGSGKTAAFCFPIISGIMTGQFAQ 232
Query: 414 KPRDMRTAYPLALILSPTRELSCQIHEEAKKFSYQTGIRVVVAYGGTPVREQLAELQRGV 593
+PR RT YPLALILSPTRELSCQIH+EA+KFSYQTG++VVVAYGG P+ +QL EL+RGV
Sbjct: 233 RPRGARTVYPLALILSPTRELSCQIHDEARKFSYQTGVKVVVAYGGAPINQQLRELERGV 292
Query: 594 DILVATPGRLNDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQ 773
DILVATPGRL DLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPP GVRQ
Sbjct: 293 DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQ 352
Query: 774 TLLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVQESDKRSHLMDLLHA 953
T+LFSATFPKEIQRLASDFL++YIFLAVGRVGSSTDLIVQRVEFV ESDKRSHLMDLLHA
Sbjct: 353 TMLFSATFPKEIQRLASDFLSSYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHA 412
Query: 954 QRDNGSHGKQALTLVFVETKKGADSLEYWLCSNGFPATTIHGDRSQQEREHALRSFKSGQ 1133
QR NG+HGKQ+LTLVFVETKKGADSLE+WLC NGFPATTIHGDR+QQEREHALRSFKSG
Sbjct: 413 QRANGAHGKQSLTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQEREHALRSFKSGN 472
Query: 1134 TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNTGLATAFFNDNNSS 1313
TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAG TGLATAFFN+NNSS
Sbjct: 473 TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNENNSS 532
Query: 1314 ISKALADLMQESNQEVPVWLQKHAATRSY 1400
+++ LADLMQE+NQEVP WL ++A+ SY
Sbjct: 533 LARPLADLMQEANQEVPAWLTRYASRASY 561
>ref|XP_002267581.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Vitis
vinifera]
Length = 617
Score = 788 bits (2036), Expect = 0.0
Identities = 388/449 (86%), Positives = 421/449 (93%)
Frame = +3
Query: 54 RRREANPFGDDGETNNVEPTFGEQENFVINFDAYEDIPVETSGDNVPPPVNTFAEIDLGE 233
R RE NPFGDD + VEP F +QEN INFDAYEDIPV+TSGDNVPP VN+F+EIDLG+
Sbjct: 107 REREVNPFGDDVD---VEPPFVQQENSGINFDAYEDIPVDTSGDNVPPAVNSFSEIDLGD 163
Query: 234 ALNLNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGILNGKYAQ 413
ALNLNIRRCKYVKPTPVQRHAIPIS+ GRDLMACAQTGSGKTAAFCFPIISGI+ G+YAQ
Sbjct: 164 ALNLNIRRCKYVKPTPVQRHAIPISIAGRDLMACAQTGSGKTAAFCFPIISGIMKGQYAQ 223
Query: 414 KPRDMRTAYPLALILSPTRELSCQIHEEAKKFSYQTGIRVVVAYGGTPVREQLAELQRGV 593
+PR RTAYPLALILSPTRELSCQIH+EAKKFSYQTG+RVVVAYGG P+ +QL +L+RGV
Sbjct: 224 RPRGSRTAYPLALILSPTRELSCQIHDEAKKFSYQTGVRVVVAYGGAPINQQLRDLERGV 283
Query: 594 DILVATPGRLNDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQ 773
DILVATPGRL DLLERAR+SLQM++YLALDEADRMLDMGFEPQIR+IVEQMDMPPRGVRQ
Sbjct: 284 DILVATPGRLVDLLERARISLQMVQYLALDEADRMLDMGFEPQIRRIVEQMDMPPRGVRQ 343
Query: 774 TLLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVQESDKRSHLMDLLHA 953
T+LFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVQESDKRSHLMDLLHA
Sbjct: 344 TMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVQESDKRSHLMDLLHA 403
Query: 954 QRDNGSHGKQALTLVFVETKKGADSLEYWLCSNGFPATTIHGDRSQQEREHALRSFKSGQ 1133
QR+NG+HGKQALTLVFVETKKGAD+LE+WLC NGFPAT+IHGDRSQQEREHALR FKSG
Sbjct: 404 QRENGTHGKQALTLVFVETKKGADALEHWLCINGFPATSIHGDRSQQEREHALRLFKSGA 463
Query: 1134 TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNTGLATAFFNDNNSS 1313
TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAG TGLATAFFN+NNSS
Sbjct: 464 TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNENNSS 523
Query: 1314 ISKALADLMQESNQEVPVWLQKHAATRSY 1400
+++ LA+LMQESNQEVP WL ++AA SY
Sbjct: 524 LARGLAELMQESNQEVPAWLSRYAARSSY 552
>ref|XP_002283489.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 37 [Vitis vinifera]
gi|147854540|emb|CAN78578.1| hypothetical protein
VITISV_013679 [Vitis vinifera]
Length = 612
Score = 772 bits (1994), Expect = 0.0
Identities = 385/450 (85%), Positives = 414/450 (92%), Gaps = 1/450 (0%)
Frame = +3
Query: 54 RRREANPFGDDGETNNVEPTFGEQENFVINFDAYEDIPVETSGDNVPPPVNTFAEIDLGE 233
R RE NPFGDD +T V F EQEN INFDAYEDIPVETSGDNVPPPVNTFAEIDLGE
Sbjct: 106 REREVNPFGDDVDTEKV---FSEQENTGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGE 162
Query: 234 ALNLNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGILNGKYAQ 413
ALN NI+RCKYVKPTPVQRHAIPISL GRDLMACAQTGSGKTAAFCFPIISGI+ G+ +Q
Sbjct: 163 ALNQNIKRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMKGQASQ 222
Query: 414 KP-RDMRTAYPLALILSPTRELSCQIHEEAKKFSYQTGIRVVVAYGGTPVREQLAELQRG 590
+P R RT YPLALILSPTRELSCQIH+EAKKFSYQTG++VVVAYGG P+ +QL +L+RG
Sbjct: 223 RPPRGARTVYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPISQQLRDLERG 282
Query: 591 VDILVATPGRLNDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVR 770
VDILVATPGRL DLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPP+GVR
Sbjct: 283 VDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPQGVR 342
Query: 771 QTLLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVQESDKRSHLMDLLH 950
QT+LFSATFPKEIQ+LASDFL+NY+FLAVGRVGSSTDLIVQRVEFV ++DKRSHLMDLLH
Sbjct: 343 QTMLFSATFPKEIQKLASDFLSNYVFLAVGRVGSSTDLIVQRVEFVHDTDKRSHLMDLLH 402
Query: 951 AQRDNGSHGKQALTLVFVETKKGADSLEYWLCSNGFPATTIHGDRSQQEREHALRSFKSG 1130
AQR NG HGKQ LTLVFVETKKGADSLE+WLC NGFPATTIHGDR+QQERE ALRSFKSG
Sbjct: 403 AQRANGVHGKQYLTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQEREQALRSFKSG 462
Query: 1131 QTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNTGLATAFFNDNNS 1310
TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAG TGLATAFFNDNNS
Sbjct: 463 VTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNDNNS 522
Query: 1311 SISKALADLMQESNQEVPVWLQKHAATRSY 1400
S++KAL++LMQE+NQEVP WL ++AA Y
Sbjct: 523 SLAKALSELMQEANQEVPAWLSRYAARSPY 552
>ref|XP_003531232.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Glycine max]
Length = 619
Score = 764 bits (1973), Expect = 0.0
Identities = 384/450 (85%), Positives = 411/450 (91%), Gaps = 1/450 (0%)
Frame = +3
Query: 54 RRREANPFGDDGETNNVEPTFGEQENFVINFDAYEDIPVETSGDNVPPPVNTFAEIDLGE 233
R RE NPF ++ +N E F EQEN INFDAYEDIPVETSGDNVPPPVNTFAEIDLGE
Sbjct: 112 REREVNPFEEE---DNAEEAFSEQENTGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGE 168
Query: 234 ALNLNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGILNGKYAQ 413
ALN NIRRCKYVKPTPVQRHAIPISL GRDLMACAQTGSGKTAAFCFPIISGI+ G+ Q
Sbjct: 169 ALNQNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQ 228
Query: 414 KP-RDMRTAYPLALILSPTRELSCQIHEEAKKFSYQTGIRVVVAYGGTPVREQLAELQRG 590
+P R +RT YPLAL+LSPTRELS QIHEEA+KFSYQTG+RVVVAYGG P+ +QL +L+RG
Sbjct: 229 RPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERG 288
Query: 591 VDILVATPGRLNDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVR 770
VDILVATPGRL DLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPP G R
Sbjct: 289 VDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGAR 348
Query: 771 QTLLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVQESDKRSHLMDLLH 950
QT+LFSATFPKEIQRLASDFL+NYIFLAVGRVGSSTDLIVQRVE+VQESDKRSHLMDLLH
Sbjct: 349 QTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLH 408
Query: 951 AQRDNGSHGKQALTLVFVETKKGADSLEYWLCSNGFPATTIHGDRSQQEREHALRSFKSG 1130
AQR NG GKQALTLVFVETKKGADSLE+WLC NGFPATTIHGDRSQQERE ALRSFKSG
Sbjct: 409 AQRANGVQGKQALTLVFVETKKGADSLEHWLCLNGFPATTIHGDRSQQERELALRSFKSG 468
Query: 1131 QTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNTGLATAFFNDNNS 1310
TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAG GLATAFFNDNNS
Sbjct: 469 NTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNS 528
Query: 1311 SISKALADLMQESNQEVPVWLQKHAATRSY 1400
S+++AL++LMQE+NQEVP WL ++AA S+
Sbjct: 529 SLARALSELMQEANQEVPAWLSRYAARSSF 558
>ref|XP_002879990.1| hypothetical protein ARALYDRAFT_483345 [Arabidopsis lyrata subsp.
lyrata] gi|297325829|gb|EFH56249.1| hypothetical protein
ARALYDRAFT_483345 [Arabidopsis lyrata subsp. lyrata]
Length = 627
Score = 763 bits (1969), Expect = 0.0
Identities = 375/452 (82%), Positives = 416/452 (92%)
Frame = +3
Query: 45 YNNRRREANPFGDDGETNNVEPTFGEQENFVINFDAYEDIPVETSGDNVPPPVNTFAEID 224
++ R RE NPF D + + EP F EQ+N VINFDAYEDIP+ETSGDNVPPPVNTFAEID
Sbjct: 106 WDRREREVNPF--DNDDSEPEPAFSEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEID 163
Query: 225 LGEALNLNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGILNGK 404
LGEALNLNIRRCKYVKPTPVQRHAIPI L GRDLMACAQTGSGKTAAFCFPIISGI+ +
Sbjct: 164 LGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQ 223
Query: 405 YAQKPRDMRTAYPLALILSPTRELSCQIHEEAKKFSYQTGIRVVVAYGGTPVREQLAELQ 584
+ Q+PR RT YPLA+ILSPTREL+ QIH+EAKKFSYQTG++VVVAYGGTP+ +QL EL+
Sbjct: 224 HVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELE 283
Query: 585 RGVDILVATPGRLNDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPRG 764
RGVDILVATPGRLNDLLERARVS+QMIR+LALDEADRMLDMGFEPQIRKIVEQMDMPPRG
Sbjct: 284 RGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRG 343
Query: 765 VRQTLLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVQESDKRSHLMDL 944
VRQTLLFSATFP+EIQRLA+DFLANYIFLAVGRVGSSTDLIVQRVEFV +SDKRSHLMDL
Sbjct: 344 VRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDL 403
Query: 945 LHAQRDNGSHGKQALTLVFVETKKGADSLEYWLCSNGFPATTIHGDRSQQEREHALRSFK 1124
LHAQR+NG GKQALTLVFVETK+GADSLE WLC NGFPAT+IHGDR+QQERE AL++FK
Sbjct: 404 LHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFK 463
Query: 1125 SGQTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNTGLATAFFNDN 1304
SG+TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAG +GLATAFFND
Sbjct: 464 SGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDG 523
Query: 1305 NSSISKALADLMQESNQEVPVWLQKHAATRSY 1400
N+S+++ LA+LMQE+NQEVP WL ++A+ S+
Sbjct: 524 NTSLARPLAELMQEANQEVPAWLTRYASRSSF 555