BLASTX nr result
ID: Coptis25_contig00004116
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00004116
(1124 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002276972.2| PREDICTED: probable DEAD-box ATP-dependent R... 506 e-166
ref|XP_002509758.1| dead box ATP-dependent RNA helicase, putativ... 483 e-158
ref|XP_003532405.1| PREDICTED: putative DEAD-box ATP-dependent R... 484 e-158
ref|XP_002304481.1| predicted protein [Populus trichocarpa] gi|2... 474 e-154
ref|XP_002298050.1| predicted protein [Populus trichocarpa] gi|2... 465 e-151
>ref|XP_002276972.2| PREDICTED: probable DEAD-box ATP-dependent RNA helicase 48-like
[Vitis vinifera] gi|297742558|emb|CBI34707.3| unnamed
protein product [Vitis vinifera]
Length = 754
Score = 506 bits (1304), Expect(2) = e-166
Identities = 248/312 (79%), Positives = 281/312 (90%)
Frame = -3
Query: 936 AAVKASSAKTNQRTPPIVVLILCPTRELASQIAAEANVMLKYHDGIGVQTLIGGTRFKVD 757
A +KA+S+ QR PPI+VLILCPTRE+ASQIAAEANVMLKYHDGIGVQTLIGGTRFK D
Sbjct: 346 AVLKATSSNRIQRVPPILVLILCPTREIASQIAAEANVMLKYHDGIGVQTLIGGTRFKFD 405
Query: 756 LKRLESDPCQIIVATPGRLLDHIENKSGFSVRLMHLKMLILDEADHLLDLGFRKDIEKVV 577
KRLESDPCQIIVATPGRLLDHIENK FSVRLM LKML+LDEADHLLDLGFRKD+EK+V
Sbjct: 406 QKRLESDPCQIIVATPGRLLDHIENKGSFSVRLMGLKMLVLDEADHLLDLGFRKDMEKIV 465
Query: 576 DCVPRQRQSVLFSATIPKEVRRVSQLVLKREHAFIDTVGLGRVETHDKVKQIYYVAPHEL 397
DC+PRQRQS+LFSAT+PKEVRR+SQLVLK+EHAF+DTVGLG ETH KV+Q Y VAPH+L
Sbjct: 466 DCLPRQRQSLLFSATVPKEVRRISQLVLKKEHAFVDTVGLGNAETHAKVRQSYLVAPHKL 525
Query: 396 HFQIVYQLLKEHVSQVVDYKVIIFCTTSMVTSLMFLLLQEMKMNVREMHSRKPQLYRTRI 217
HFQIVY LLK+H+ QV DYKVI+FCTT+MVTSL+FLLLQEMK+NVRE+HSRKPQ+YRTRI
Sbjct: 526 HFQIVYHLLKDHILQVPDYKVIVFCTTAMVTSLVFLLLQEMKVNVREIHSRKPQIYRTRI 585
Query: 216 SDEFRESKRLILVTSDVSARGMNYPDVTLVIQVGTPTDREQYIHRLXXXXXXXXXXXGVL 37
S+EFRESKRL+L+TSDVSARG+NYPDVTLVIQ+G P+DREQYIHRL G+L
Sbjct: 586 SEEFRESKRLVLITSDVSARGINYPDVTLVIQMGIPSDREQYIHRLGRTGREGKEGEGIL 645
Query: 36 LLAPWEDYILDE 1
L+APWE+Y LDE
Sbjct: 646 LVAPWEEYFLDE 657
Score = 107 bits (268), Expect(2) = e-166
Identities = 53/63 (84%), Positives = 59/63 (93%)
Frame = -1
Query: 1124 EESILSQKRFDESNISPLTIKALTSAGYLQMTKVQEATLSVCLDGMDALVKAKTGTGKSA 945
EESILSQKRFDE +SPLT+KAL+SAGY+QMT+VQEATL VCL+G DALVKAKTGTGKSA
Sbjct: 278 EESILSQKRFDECGVSPLTVKALSSAGYVQMTRVQEATLDVCLEGKDALVKAKTGTGKSA 337
Query: 944 AFL 936
AFL
Sbjct: 338 AFL 340
>ref|XP_002509758.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223549657|gb|EEF51145.1| dead box ATP-dependent RNA
helicase, putative [Ricinus communis]
Length = 771
Score = 483 bits (1242), Expect(2) = e-158
Identities = 240/312 (76%), Positives = 265/312 (84%)
Frame = -3
Query: 936 AAVKASSAKTNQRTPPIVVLILCPTRELASQIAAEANVMLKYHDGIGVQTLIGGTRFKVD 757
A +KA S+ R PI VLILCPTRELASQIAAEAN MLKYHDGI VQTL+GGTRFK D
Sbjct: 363 AVLKAKSSNVKPRVSPIYVLILCPTRELASQIAAEANAMLKYHDGISVQTLVGGTRFKDD 422
Query: 756 LKRLESDPCQIIVATPGRLLDHIENKSGFSVRLMHLKMLILDEADHLLDLGFRKDIEKVV 577
KRLE +PCQIIVATPGRLLDHIENK G SV LM LKMLILDEADHLLDLGFRKD+EK++
Sbjct: 423 QKRLEMNPCQIIVATPGRLLDHIENKGGLSVHLMGLKMLILDEADHLLDLGFRKDVEKII 482
Query: 576 DCVPRQRQSVLFSATIPKEVRRVSQLVLKREHAFIDTVGLGRVETHDKVKQIYYVAPHEL 397
DC+PR+R S++FSATIPKEVRR+SQLVLKREHAFIDTVGLG VET KVKQ V PHEL
Sbjct: 483 DCLPRERHSLMFSATIPKEVRRISQLVLKREHAFIDTVGLGSVETPSKVKQFSVVVPHEL 542
Query: 396 HFQIVYQLLKEHVSQVVDYKVIIFCTTSMVTSLMFLLLQEMKMNVREMHSRKPQLYRTRI 217
HFQ+V+ LKEH+ Q DYKVI+FCTT MVTSLM+ LL+EMKMNV+E+HSRKPQLYRTR+
Sbjct: 543 HFQVVHHFLKEHILQTPDYKVIVFCTTGMVTSLMYTLLREMKMNVKEIHSRKPQLYRTRV 602
Query: 216 SDEFRESKRLILVTSDVSARGMNYPDVTLVIQVGTPTDREQYIHRLXXXXXXXXXXXGVL 37
SDEFRES+R ILV+SDVSARGMNYPDVTLVIQVG PTDREQYIHRL G+L
Sbjct: 603 SDEFRESRRSILVSSDVSARGMNYPDVTLVIQVGLPTDREQYIHRLGRTGREGKDGEGIL 662
Query: 36 LLAPWEDYILDE 1
LLAPWE+Y LDE
Sbjct: 663 LLAPWEEYFLDE 674
Score = 104 bits (260), Expect(2) = e-158
Identities = 51/63 (80%), Positives = 58/63 (92%)
Frame = -1
Query: 1124 EESILSQKRFDESNISPLTIKALTSAGYLQMTKVQEATLSVCLDGMDALVKAKTGTGKSA 945
+ESIL Q+RFDE ISPLT+KALT+AGY+QMT+VQEATLS CL+G DALVKAKTGTGKSA
Sbjct: 295 QESILGQRRFDECGISPLTVKALTTAGYVQMTRVQEATLSACLEGKDALVKAKTGTGKSA 354
Query: 944 AFL 936
AFL
Sbjct: 355 AFL 357
>ref|XP_003532405.1| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 33-like
[Glycine max]
Length = 707
Score = 484 bits (1247), Expect(2) = e-158
Identities = 240/310 (77%), Positives = 273/310 (88%)
Frame = -3
Query: 930 VKASSAKTNQRTPPIVVLILCPTRELASQIAAEANVMLKYHDGIGVQTLIGGTRFKVDLK 751
+KA S+ T+QR PPI VLILCPTRELASQIAA A V+LKYH+ IGVQTL+GG RFKVD K
Sbjct: 301 LKAMSSNTSQRVPPIYVLILCPTRELASQIAAVAKVLLKYHETIGVQTLVGGIRFKVDQK 360
Query: 750 RLESDPCQIIVATPGRLLDHIENKSGFSVRLMHLKMLILDEADHLLDLGFRKDIEKVVDC 571
RLESDPCQI+VATPGRLLDHIENKSG S+RLM L+ML+LDEADHLLDLGFRKD+EK+VDC
Sbjct: 361 RLESDPCQILVATPGRLLDHIENKSGISLRLMGLRMLVLDEADHLLDLGFRKDVEKIVDC 420
Query: 570 VPRQRQSVLFSATIPKEVRRVSQLVLKREHAFIDTVGLGRVETHDKVKQIYYVAPHELHF 391
+PRQRQS+LFSAT+PKEVRRVSQLVLKREH ++DTVG+G VET KVKQ Y +APHE HF
Sbjct: 421 LPRQRQSLLFSATMPKEVRRVSQLVLKREHKYVDTVGMGCVETPVKVKQSYLIAPHESHF 480
Query: 390 QIVYQLLKEHVSQVVDYKVIIFCTTSMVTSLMFLLLQEMKMNVREMHSRKPQLYRTRISD 211
Q+V+Q+LKEH+ Q DYKVI+FC T MVTSLM+ LL+EMKMNVRE+HSRKPQLYRTRISD
Sbjct: 481 QLVHQILKEHILQTPDYKVIVFCVTGMVTSLMYNLLREMKMNVREIHSRKPQLYRTRISD 540
Query: 210 EFRESKRLILVTSDVSARGMNYPDVTLVIQVGTPTDREQYIHRLXXXXXXXXXXXGVLLL 31
EFRESK+LILV+SDVS+RGMNYPDVTLVIQVG P+DREQYIHRL GVLL+
Sbjct: 541 EFRESKQLILVSSDVSSRGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREDKEGEGVLLI 600
Query: 30 APWEDYILDE 1
APWE+Y LDE
Sbjct: 601 APWEEYFLDE 610
Score = 100 bits (248), Expect(2) = e-158
Identities = 48/62 (77%), Positives = 56/62 (90%)
Frame = -1
Query: 1121 ESILSQKRFDESNISPLTIKALTSAGYLQMTKVQEATLSVCLDGMDALVKAKTGTGKSAA 942
ESILS RFDE ISPLT+KAL+SAGY+QMT++QEA+L +CL+GMDALVKAKTGTGKS A
Sbjct: 232 ESILSNTRFDECGISPLTVKALSSAGYVQMTRIQEASLPICLEGMDALVKAKTGTGKSVA 291
Query: 941 FL 936
FL
Sbjct: 292 FL 293
>ref|XP_002304481.1| predicted protein [Populus trichocarpa] gi|222841913|gb|EEE79460.1|
predicted protein [Populus trichocarpa]
Length = 798
Score = 474 bits (1219), Expect(2) = e-154
Identities = 238/312 (76%), Positives = 267/312 (85%)
Frame = -3
Query: 936 AAVKASSAKTNQRTPPIVVLILCPTRELASQIAAEANVMLKYHDGIGVQTLIGGTRFKVD 757
A +KA+S+ + PI LILCPTRELASQIAAEAN MLKYHDGIGV TL+GGTRFK D
Sbjct: 390 AVLKATSSNDKPQVSPIYALILCPTRELASQIAAEANAMLKYHDGIGVLTLVGGTRFKDD 449
Query: 756 LKRLESDPCQIIVATPGRLLDHIENKSGFSVRLMHLKMLILDEADHLLDLGFRKDIEKVV 577
+RLESDP QIIVATPGRLLDHIENK G SV LM LK+LILDEADHLLDLGFRKD+EK++
Sbjct: 450 QRRLESDPYQIIVATPGRLLDHIENKGGLSVHLMGLKVLILDEADHLLDLGFRKDMEKIL 509
Query: 576 DCVPRQRQSVLFSATIPKEVRRVSQLVLKREHAFIDTVGLGRVETHDKVKQIYYVAPHEL 397
DC+PRQRQS+LFSATIPKEVRR+SQLVLKREHAFI+TVG+G VET K+KQ + V+PH L
Sbjct: 510 DCLPRQRQSLLFSATIPKEVRRISQLVLKREHAFINTVGVGCVETPAKIKQSFLVSPHRL 569
Query: 396 HFQIVYQLLKEHVSQVVDYKVIIFCTTSMVTSLMFLLLQEMKMNVREMHSRKPQLYRTRI 217
HFQ+V+ LLKEH+ Q DYKVI+FCTT MVTSLM+LLL+EM MNVREMHSRKPQLYRTR+
Sbjct: 570 HFQVVHHLLKEHILQAPDYKVIVFCTTGMVTSLMYLLLREMNMNVREMHSRKPQLYRTRV 629
Query: 216 SDEFRESKRLILVTSDVSARGMNYPDVTLVIQVGTPTDREQYIHRLXXXXXXXXXXXGVL 37
S+EFRESKRLILVTSDVSARGMNYPDVTLVIQVG P DRE YIHRL G+L
Sbjct: 630 SNEFRESKRLILVTSDVSARGMNYPDVTLVIQVGIPYDREHYIHRLGRTGREGKDGEGIL 689
Query: 36 LLAPWEDYILDE 1
LLAPWE+Y L+E
Sbjct: 690 LLAPWEEYFLNE 701
Score = 99.4 bits (246), Expect(2) = e-154
Identities = 50/64 (78%), Positives = 59/64 (92%), Gaps = 1/64 (1%)
Frame = -1
Query: 1124 EESILSQKRFDESNISPLTIKALTSAGYLQMTKVQEATLSVCLD-GMDALVKAKTGTGKS 948
E+SILS+KRFDE +SPLT+KAL +AGY+QMT+VQEATLSVCL+ G DA+VKAKTGTGKS
Sbjct: 321 EDSILSEKRFDECGLSPLTVKALIAAGYVQMTRVQEATLSVCLEAGKDAMVKAKTGTGKS 380
Query: 947 AAFL 936
AAFL
Sbjct: 381 AAFL 384
>ref|XP_002298050.1| predicted protein [Populus trichocarpa] gi|222845308|gb|EEE82855.1|
predicted protein [Populus trichocarpa]
Length = 784
Score = 465 bits (1196), Expect(2) = e-151
Identities = 232/312 (74%), Positives = 264/312 (84%)
Frame = -3
Query: 936 AAVKASSAKTNQRTPPIVVLILCPTRELASQIAAEANVMLKYHDGIGVQTLIGGTRFKVD 757
A +KA S+ R PI VLILCPTRELASQIAAEAN +LKYHDGI +QTL+GGTRFK D
Sbjct: 376 AVLKARSSNAKLRVSPIYVLILCPTRELASQIAAEANAILKYHDGIVMQTLVGGTRFKDD 435
Query: 756 LKRLESDPCQIIVATPGRLLDHIENKSGFSVRLMHLKMLILDEADHLLDLGFRKDIEKVV 577
+ LESDPCQI+VATPGRLLDHIENKSG S+ L LKMLILDEADHLLDLGFRKD+EK+V
Sbjct: 436 QRCLESDPCQILVATPGRLLDHIENKSGLSMHLKGLKMLILDEADHLLDLGFRKDVEKIV 495
Query: 576 DCVPRQRQSVLFSATIPKEVRRVSQLVLKREHAFIDTVGLGRVETHDKVKQIYYVAPHEL 397
DC+PRQRQS+LFSATIPKEV R+SQLVLKREH F++TVG+ +ET K+KQ + V+PHEL
Sbjct: 496 DCLPRQRQSLLFSATIPKEVHRISQLVLKREHDFVNTVGVSCMETPAKIKQSFLVSPHEL 555
Query: 396 HFQIVYQLLKEHVSQVVDYKVIIFCTTSMVTSLMFLLLQEMKMNVREMHSRKPQLYRTRI 217
HFQ+V+ LLKEH+ + DYKVI+FCTT MVTSLM+LLL+EMKMNVREMHSRKPQLYRTR+
Sbjct: 556 HFQVVHYLLKEHIQKAPDYKVIVFCTTGMVTSLMYLLLREMKMNVREMHSRKPQLYRTRV 615
Query: 216 SDEFRESKRLILVTSDVSARGMNYPDVTLVIQVGTPTDREQYIHRLXXXXXXXXXXXGVL 37
SDEF+ES RL+LVTSDVSA GMNYPDVTLVIQVG P DREQYI RL G+L
Sbjct: 616 SDEFQESNRLVLVTSDVSACGMNYPDVTLVIQVGIPCDREQYIDRLGRIGHEGKDGGGIL 675
Query: 36 LLAPWEDYILDE 1
LLAPWE+Y LDE
Sbjct: 676 LLAPWEEYFLDE 687
Score = 98.6 bits (244), Expect(2) = e-151
Identities = 50/64 (78%), Positives = 58/64 (90%), Gaps = 1/64 (1%)
Frame = -1
Query: 1124 EESILSQKRFDESNISPLTIKALTSAGYLQMTKVQEATLSVCLD-GMDALVKAKTGTGKS 948
E+SILS KRFDE +SPLT+KALT+AGY+QMT+VQEATLSVCL+ G DA+VKAKTG GKS
Sbjct: 307 EDSILSDKRFDECGLSPLTVKALTAAGYVQMTRVQEATLSVCLEAGKDAMVKAKTGKGKS 366
Query: 947 AAFL 936
AAFL
Sbjct: 367 AAFL 370