BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00004104
         (1787 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279575.1| PREDICTED: ribosome biogenesis protein WDR12...   651   0.0  
ref|XP_002324109.1| predicted protein [Populus trichocarpa] gi|2...   630   e-178
emb|CAN70824.1| hypothetical protein VITISV_042345 [Vitis vinifera]   624   e-176
ref|XP_003543948.1| PREDICTED: ribosome biogenesis protein WDR12...   612   e-172
ref|XP_002873732.1| transducin family protein [Arabidopsis lyrat...   612   e-172

>ref|XP_002279575.1| PREDICTED: ribosome biogenesis protein WDR12 homolog [Vitis vinifera]
            gi|296082215|emb|CBI21220.3| unnamed protein product
            [Vitis vinifera]
          Length = 438

 Score =  651 bits (1679), Expect = 0.0
 Identities = 305/424 (71%), Positives = 353/424 (83%)
 Frame = -1

Query: 1700 TKQVQVRFITKLKSPLKIPSTSIAIPSKSTRLDLSTIVNDFIKSGNNSHWERLPFDFLID 1521
            +++VQVRF TKL+SP K P TSIAIPS  TR+ LS IVN+ +KSGN   W+  PFDFLID
Sbjct: 11   SRRVQVRFTTKLQSPFKTPPTSIAIPSNLTRMGLSAIVNNLLKSGNPD-WKPEPFDFLID 69

Query: 1520 GELVRMELEHFLLAKGISAEKILEVEYIKAAVPRKQEDPCLHDDWVSAVNGSNPRFIFTG 1341
            GELVRM LE FL+AKGISAEKILE+EYIKA  PRKQE+P LHDDWVSAV+GSNP FI TG
Sbjct: 70   GELVRMSLEQFLIAKGISAEKILEIEYIKAVAPRKQEEPSLHDDWVSAVDGSNPGFILTG 129

Query: 1340 SYDSFARVWKSDGLCTHVLEGHKDAITSVSLVNSKGVESDTSLHIATASKDRTVRLWKFD 1161
             YD   R+WK+ G CTH+LEGH DAITSV  ++ KG+ES  +  +ATASKDRT+RLWKFD
Sbjct: 130  CYDGLGRLWKAAGSCTHILEGHNDAITSVKFIDPKGLESVNNSVVATASKDRTLRLWKFD 189

Query: 1160 AEEHYNQPWKITAYKVLKGHTAAVHSVVSHPSGDMVCSGSWDSTINLWRTNDSEAEGDLA 981
            A E ++ P KI A+K+L GH A+V SV   P+G+MVCSGSWD TINLWRT++ + EGDL 
Sbjct: 190  AGERHDLPLKIRAFKILHGHNASVQSVAVQPTGNMVCSGSWDCTINLWRTDEFDVEGDLV 249

Query: 980  SIKKRKVGTDAKESQLEGEAVSTFVGHTQCVSSVVWPECEDIYSASWDHSIRRWDIETGK 801
            S+KKRKV  +A+ESQ EGEAVST VGHTQCVSSV+WP+ E IYSASWDHS+RRWD+ETGK
Sbjct: 250  SVKKRKVNNEAEESQAEGEAVSTIVGHTQCVSSVIWPQHETIYSASWDHSVRRWDVETGK 309

Query: 800  DTLNVFTGKVLNCVDVGGEGSSLIAAGGSDPVLRIWDPRRPGNVAPTFQFSSHSSWIMAC 621
            D+ N+F GK LNC+DVGGE S+LIAAGGSD  LRIWDPR+PG + P FQFSSH+SWI AC
Sbjct: 310  DSWNLFCGKALNCLDVGGESSALIAAGGSDTTLRIWDPRKPGTLTPVFQFSSHTSWISAC 369

Query: 620  KWHKKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHKDKVLCADWWKDDCVISGGADLEL 441
            KWH KSWFHLLSASYDGKVMLWDLRTAWPLAVIDSH +KVLCADWWK D V+SGGAD +L
Sbjct: 370  KWHNKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNNKVLCADWWKGDSVVSGGADSKL 429

Query: 440  CISS 429
            CISS
Sbjct: 430  CISS 433


>ref|XP_002324109.1| predicted protein [Populus trichocarpa] gi|222867111|gb|EEF04242.1|
            predicted protein [Populus trichocarpa]
          Length = 433

 Score =  630 bits (1624), Expect = e-178
 Identities = 299/424 (70%), Positives = 350/424 (82%)
 Frame = -1

Query: 1697 KQVQVRFITKLKSPLKIPSTSIAIPSKSTRLDLSTIVNDFIKSGNNSHWERLPFDFLIDG 1518
            ++VQVRFITKLK P K+P+TSIAIP+  TRL LSTIVN  +K+G++  WE  PFDFLIDG
Sbjct: 10   RRVQVRFITKLKPPFKVPNTSIAIPANLTRLGLSTIVNSLLKAGDDE-WESQPFDFLIDG 68

Query: 1517 ELVRMELEHFLLAKGISAEKILEVEYIKAAVPRKQEDPCLHDDWVSAVNGSNPRFIFTGS 1338
            ELVR+ LE FLLAKGISAEK+LE+EY +A V +K+++P LHDDWVSAV+GS PRFI TG 
Sbjct: 69   ELVRLPLEQFLLAKGISAEKVLEIEYTRAVVLQKEDEPSLHDDWVSAVDGSCPRFILTGC 128

Query: 1337 YDSFARVWKSDGLCTHVLEGHKDAITSVSLVNSKGVESDTSLHIATASKDRTVRLWKFDA 1158
            YD+  RVWK+ G CTH+LEGH  AITSVS+VNS+G +S T   +ATASKD T+RLWKFD 
Sbjct: 129  YDNLGRVWKAAGECTHILEGHGGAITSVSVVNSEGTDSVT---VATASKDETLRLWKFDT 185

Query: 1157 EEHYNQPWKITAYKVLKGHTAAVHSVVSHPSGDMVCSGSWDSTINLWRTNDSEAEGDLAS 978
            EEH +QP KI A+K+L+GH A V SV +  SG M+CSGSWD TINLWRTN+S+ E DL S
Sbjct: 186  EEHLDQPSKIRAFKILRGHNAPVQSVAAEASGSMICSGSWDCTINLWRTNESDTESDLVS 245

Query: 977  IKKRKVGTDAKESQLEGEAVSTFVGHTQCVSSVVWPECEDIYSASWDHSIRRWDIETGKD 798
            IKKRKV   A ESQLEG A+ST VGHTQCVSSV WPE   IYSASWDHS+RRWD+E GKD
Sbjct: 246  IKKRKVKNKAGESQLEGGALSTLVGHTQCVSSVYWPEPNTIYSASWDHSVRRWDVEMGKD 305

Query: 797  TLNVFTGKVLNCVDVGGEGSSLIAAGGSDPVLRIWDPRRPGNVAPTFQFSSHSSWIMACK 618
              N+F GK L+C+ VGGEGS+LIAAGGSDP+LR+WDPR+PG  AP +QFSSH+SWI ACK
Sbjct: 306  LSNIFCGKALHCLHVGGEGSALIAAGGSDPILRVWDPRKPGTSAPIYQFSSHNSWISACK 365

Query: 617  WHKKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHKDKVLCADWWKDDCVISGGADLELC 438
            WH +S FHLLSASYDGK+MLWDLRTAWPLA+IDSH+DKVLCADWWK D VISGG D +L 
Sbjct: 366  WHSESLFHLLSASYDGKLMLWDLRTAWPLAIIDSHEDKVLCADWWKGDSVISGGVDSKLR 425

Query: 437  ISSG 426
            ISSG
Sbjct: 426  ISSG 429


>emb|CAN70824.1| hypothetical protein VITISV_042345 [Vitis vinifera]
          Length = 427

 Score =  624 bits (1610), Expect = e-176
 Identities = 300/424 (70%), Positives = 343/424 (80%)
 Frame = -1

Query: 1700 TKQVQVRFITKLKSPLKIPSTSIAIPSKSTRLDLSTIVNDFIKSGNNSHWERLPFDFLID 1521
            +++VQVRF TKL+SP K P TSIAIPS  TR+ LS IVN+ +KSGN   W+  PFDFLID
Sbjct: 11   SRRVQVRFTTKLQSPFKTPPTSIAIPSNLTRMGLSAIVNNLLKSGNPD-WKPEPFDFLID 69

Query: 1520 GELVRMELEHFLLAKGISAEKILEVEYIKAAVPRKQEDPCLHDDWVSAVNGSNPRFIFTG 1341
            GELVRM LE FL+AKGISAEKILE+EYIKA  PRKQE+P LHDDWVSAV+GSNP FI TG
Sbjct: 70   GELVRMSLEQFLIAKGISAEKILEIEYIKAVAPRKQEEPSLHDDWVSAVDGSNPGFILTG 129

Query: 1340 SYDSFARVWKSDGLCTHVLEGHKDAITSVSLVNSKGVESDTSLHIATASKDRTVRLWKFD 1161
             YD   R+WK+ G CTH+LEGH DAITSV  ++ K V        ATASKDRT+RLWK  
Sbjct: 130  CYDGLGRLWKAAGSCTHILEGHNDAITSVKFIDPKVV--------ATASKDRTLRLWKGS 181

Query: 1160 AEEHYNQPWKITAYKVLKGHTAAVHSVVSHPSGDMVCSGSWDSTINLWRTNDSEAEGDLA 981
            A      P KI A+K+L GH A+V SV   P+G+MVCSGSWD TINLWRT++ + EGDL 
Sbjct: 182  AMIF---PLKIRAFKILHGHNASVQSVAVQPTGNMVCSGSWDCTINLWRTDEFDVEGDLV 238

Query: 980  SIKKRKVGTDAKESQLEGEAVSTFVGHTQCVSSVVWPECEDIYSASWDHSIRRWDIETGK 801
            S+KKRKV  +A+ESQ EGEAVST VGHTQCVSSV+WP+ E IYSASWDHS+RRWD+ETGK
Sbjct: 239  SVKKRKVNNEAEESQAEGEAVSTIVGHTQCVSSVIWPQHETIYSASWDHSVRRWDVETGK 298

Query: 800  DTLNVFTGKVLNCVDVGGEGSSLIAAGGSDPVLRIWDPRRPGNVAPTFQFSSHSSWIMAC 621
            D+ N+F GK LNC+DVGGE S+LIAAGGSD  LRIWDPR+PG + P FQFSSH+SWI AC
Sbjct: 299  DSWNLFCGKALNCLDVGGESSALIAAGGSDTTLRIWDPRKPGTLTPVFQFSSHTSWISAC 358

Query: 620  KWHKKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHKDKVLCADWWKDDCVISGGADLEL 441
            KWH KSWFHLLSASYDGKVMLWDLRTAWPLAVIDSH +KVLCADWWK D V+SGGAD +L
Sbjct: 359  KWHNKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNNKVLCADWWKGDSVVSGGADSKL 418

Query: 440  CISS 429
            CISS
Sbjct: 419  CISS 422


>ref|XP_003543948.1| PREDICTED: ribosome biogenesis protein WDR12 homolog [Glycine max]
          Length = 435

 Score =  612 bits (1578), Expect = e-172
 Identities = 286/423 (67%), Positives = 343/423 (81%)
 Frame = -1

Query: 1697 KQVQVRFITKLKSPLKIPSTSIAIPSKSTRLDLSTIVNDFIKSGNNSHWERLPFDFLIDG 1518
            ++VQVRF+TKL  P K+P+T+IAIP+   RL LS++VN  ++S +  H    PFDFLIDG
Sbjct: 13   RRVQVRFVTKLGEPYKVPTTAIAIPADLARLGLSSLVNALLQSNDADHQPE-PFDFLIDG 71

Query: 1517 ELVRMELEHFLLAKGISAEKILEVEYIKAAVPRKQEDPCLHDDWVSAVNGSNPRFIFTGS 1338
            E VRM LE FLLAKGISAE+ILE+EY +A  PRK+EDP LHDDWVSAV+GS+ RF  TG 
Sbjct: 72   EFVRMSLEQFLLAKGISAERILEIEYARAVAPRKEEDPSLHDDWVSAVDGSSSRFFLTGC 131

Query: 1337 YDSFARVWKSDGLCTHVLEGHKDAITSVSLVNSKGVESDTSLHIATASKDRTVRLWKFDA 1158
            YD   RVWK  GLCTH+LEGH DAITS+S++N KG E+ T   +ATASKDRT+RLWK +A
Sbjct: 132  YDGLGRVWKGAGLCTHILEGHSDAITSISIINPKGEETVT---VATASKDRTLRLWKLNA 188

Query: 1157 EEHYNQPWKITAYKVLKGHTAAVHSVVSHPSGDMVCSGSWDSTINLWRTNDSEAEGDLAS 978
             +H N P ++ AYK+L+GH ++V  V    +G+MVCS SWD TINLW+TND  AE DL S
Sbjct: 189  GDHVNNPMRVRAYKILRGHKSSVQCVAVQTAGEMVCSASWDCTINLWQTNDFNAEDDLVS 248

Query: 977  IKKRKVGTDAKESQLEGEAVSTFVGHTQCVSSVVWPECEDIYSASWDHSIRRWDIETGKD 798
             KKRK+G   +ESQLEGEA +T VGHTQCVS+VVWP+ E IYSASWDHSIR+WD+ETGK+
Sbjct: 249  -KKRKIGAQVEESQLEGEAFTTLVGHTQCVSAVVWPQRESIYSASWDHSIRKWDVETGKN 307

Query: 797  TLNVFTGKVLNCVDVGGEGSSLIAAGGSDPVLRIWDPRRPGNVAPTFQFSSHSSWIMACK 618
              ++F GKVLNC+D+GGEGS+LIAAGGSDPV+RIWDPR+PG  AP FQFSSH SW+ ACK
Sbjct: 308  LTDLFCGKVLNCLDIGGEGSTLIAAGGSDPVIRIWDPRKPGTSAPVFQFSSHMSWVSACK 367

Query: 617  WHKKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHKDKVLCADWWKDDCVISGGADLELC 438
            WH +SWFHLLSASYDGKVMLWDLRTAWPL+VI+SH DKVL ADWWK + VISGGAD +LC
Sbjct: 368  WHDQSWFHLLSASYDGKVMLWDLRTAWPLSVIESHSDKVLSADWWKSNSVISGGADSKLC 427

Query: 437  ISS 429
            ISS
Sbjct: 428  ISS 430


>ref|XP_002873732.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]
            gi|297319569|gb|EFH49991.1| transducin family protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 433

 Score =  612 bits (1578), Expect = e-172
 Identities = 288/425 (67%), Positives = 346/425 (81%)
 Frame = -1

Query: 1700 TKQVQVRFITKLKSPLKIPSTSIAIPSKSTRLDLSTIVNDFIKSGNNSHWERLPFDFLID 1521
            ++++ V+F+TKL SP K+P+ S+AIPS  TRL LS+IVN  I+S +N  W+  PFDFLID
Sbjct: 9    SRRLHVKFVTKLDSPFKVPANSVAIPSNVTRLGLSSIVNSIIES-DNPEWKTEPFDFLID 67

Query: 1520 GELVRMELEHFLLAKGISAEKILEVEYIKAAVPRKQEDPCLHDDWVSAVNGSNPRFIFTG 1341
            GEL+RM LE FLLAKGISAE+ LE+EYI+A  PRK+E+P LHDDWVSAVNGS+PRFI TG
Sbjct: 68   GELIRMSLEEFLLAKGISAERTLEIEYIRAVTPRKEEEPSLHDDWVSAVNGSSPRFILTG 127

Query: 1340 SYDSFARVWKSDGLCTHVLEGHKDAITSVSLVNSKGVESDTSLHIATASKDRTVRLWKFD 1161
             YD   RVW S G C+H+LEGH  AI+SV+LVNS   E+ T   +AT+SKDRT+RL+KFD
Sbjct: 128  CYDGLGRVWSSAGSCSHILEGHSGAISSVALVNSNDAETVT---VATSSKDRTLRLFKFD 184

Query: 1160 AEEHYNQPWKITAYKVLKGHTAAVHSVVSHPSGDMVCSGSWDSTINLWRTNDSEAEGDLA 981
              E  +   K+ AYK+L+GH A+V SV +  SG+MVCS SWD TINLW TN+S +EG+  
Sbjct: 185  PTESVDSTTKVRAYKILRGHKASVQSVSAQKSGNMVCSSSWDCTINLWNTNESTSEGESV 244

Query: 980  SIKKRKVGTDAKESQLEGEAVSTFVGHTQCVSSVVWPECEDIYSASWDHSIRRWDIETGK 801
            S+KKRK     +ESQ EGEAV++ VGHTQCVSSVVWPE + IYS+SWDHS+RRWD+ETGK
Sbjct: 245  SVKKRKGNNQGEESQSEGEAVTSLVGHTQCVSSVVWPEYDVIYSSSWDHSVRRWDVETGK 304

Query: 800  DTLNVFTGKVLNCVDVGGEGSSLIAAGGSDPVLRIWDPRRPGNVAPTFQFSSHSSWIMAC 621
            D+LN+F GK LN VDVGGEGS+LIAAGGSDP+LR+WDPR+PG  AP FQFSSHSSWI AC
Sbjct: 305  DSLNLFCGKALNTVDVGGEGSALIAAGGSDPILRVWDPRKPGTSAPVFQFSSHSSWISAC 364

Query: 620  KWHKKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHKDKVLCADWWKDDCVISGGADLEL 441
            KWHK SWFHLLSASYDGK+MLWDLRTAWPL+VID+H DKVL ADWWK + VISGGAD +L
Sbjct: 365  KWHKSSWFHLLSASYDGKIMLWDLRTAWPLSVIDTHNDKVLSADWWKGESVISGGADSKL 424

Query: 440  CISSG 426
             ISSG
Sbjct: 425  RISSG 429