BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00004081
         (1559 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   608   e-171
emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]   593   e-167
emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]   589   e-166
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   588   e-165
ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho...   583   e-164

>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  608 bits (1568), Expect = e-171
 Identities = 297/442 (67%), Positives = 347/442 (78%), Gaps = 5/442 (1%)
 Frame = +1

Query: 1    QTFRXXXXXXXXXXXRIYIPNGRSLMGCLDETRTLEYGEVFIQISHAGRKQNGNGGLFAS 180
            QTFR           RI++PNGRS+MGCLDETRTLEYGEVF+QIS  G +Q+    L   
Sbjct: 681  QTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFR 740

Query: 181  SSTGSHQRNRIVEGTVVVAKNPCLHPGDVRVLRAVNEPGLHHMVDCVVFPQKGIRPHPNE 360
             S GSH  N I+EG +VVAKNPCLHPGDVRVL AVN P LHHMVDCVVFPQKG RPHPNE
Sbjct: 741  GS-GSHHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNE 799

Query: 361  CSGSDLDGDIYFVSWDHELIPPREVEPMDYTPAPPAIVDHDVKLEEVHEYFANYMVSDSL 540
            CSGSDLDGDIYFV WD +LIPP+++ PMDYTPAP  ++DHDV +EEV EYF NY+V+DSL
Sbjct: 800  CSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSL 859

Query: 541  GIIANAHTAFADKEQGMAESVACRELARLFSIAVDFPKTGAPAKIPPHLYVKEYPDFMEK 720
            GIIANAHT FADKE   A    C ELA+LFSIAVDFPKTG PA+IP +L VKEYPDFMEK
Sbjct: 860  GIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEK 919

Query: 721  PDKPTYESQRVIGKLFREVKDIVPHRSCIPSFTWEVAKRCYDHDMEVDGYAYYLDDAKQY 900
             DKPTYESQ VIGKLFREVKDI PH   I SFT +VA++ YD DMEV G+  Y+ DA  Y
Sbjct: 920  ADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYY 979

Query: 901  KEKYDFKLGNLMDTYGIKTEADILARGLVKESISYNRKKDADAIGEAVRSLRKEARKWFD 1080
            K +YD+KLGNLMD YGIKTE++IL+  +++ S S++R+KDA+AIG AV+SLRKEAR WF+
Sbjct: 980  KSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFN 1039

Query: 1081 EKG----SNSDDIYAKASAWYHVTYHPNYWGAYNEGMKRDHYLSFPWCVYDKLIHIKRQK 1248
            + G    S +DD+YAKASAWYHVTYHP+YWG YNEGM RDH+LSFPWCVYDKLIH KR+K
Sbjct: 1040 KMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKK 1099

Query: 1249 -AKKVPEYQSLEEQFRRGVRFG 1311
             + +     SLE +  +G+R G
Sbjct: 1100 MSGRSLHLSSLERRLSQGLRLG 1121


>emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]
          Length = 697

 Score =  593 bits (1528), Expect = e-167
 Identities = 287/432 (66%), Positives = 338/432 (78%), Gaps = 4/432 (0%)
 Frame = +1

Query: 1    QTFRXXXXXXXXXXXRIYIPNGRSLMGCLDETRTLEYGEVFIQISHAGRKQNGNGGLFAS 180
            QTFR           RI++PNGRS+MGCLDETRTLEYGEVF+QIS  G +Q+    L   
Sbjct: 223  QTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFY 282

Query: 181  SSTGSHQRNRIVEGTVVVAKNPCLHPGDVRVLRAVNEPGLHHMVDCVVFPQKGIRPHPNE 360
             S GSH  N I+EG VVVAKNPCLHPGDVR+L AV+ P LHHMVDCVVFPQKG+RPHP+E
Sbjct: 283  GS-GSHHDNFILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDE 341

Query: 361  CSGSDLDGDIYFVSWDHELIPPREVEPMDYTPAPPAIVDHDVKLEEVHEYFANYMVSDSL 540
            CSGSDLDGDIYFV WDH+LIPPR++ PMDYTPAP  ++DHDV +EEV EYF NY+ +D L
Sbjct: 342  CSGSDLDGDIYFVCWDHDLIPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKL 401

Query: 541  GIIANAHTAFADKEQGMAESVACRELARLFSIAVDFPKTGAPAKIPPHLYVKEYPDFMEK 720
            GIIANAHT FADKE   A    C+ELA+LFSIA++FPKTG PA+IP HL+VKEYPDFMEK
Sbjct: 402  GIIANAHTVFADKEYDKALCPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEK 461

Query: 721  PDKPTYESQRVIGKLFREVKDIVPHRSCIPSFTWEVAKRCYDHDMEVDGYAYYLDDAKQY 900
             +KPTYESQ VIGKLFREVKD+ PH   I SFT +VA + YD DMEVDG+  Y+ DA  Y
Sbjct: 462  ANKPTYESQSVIGKLFREVKDVAPHNYDIRSFTRDVAMQSYDADMEVDGFEDYVRDAFYY 521

Query: 901  KEKYDFKLGNLMDTYGIKTEADILARGLVKESISYNRKKDADAIGEAVRSLRKEARKWFD 1080
            K +YDFKLG+LMD YGI+TE++IL+  L+K S S++++KDA+AI  AVRSLRKEAR WF+
Sbjct: 522  KSQYDFKLGSLMDCYGIRTESEILSGSLMKMSKSFDKRKDAEAIALAVRSLRKEARTWFN 581

Query: 1081 EKGS----NSDDIYAKASAWYHVTYHPNYWGAYNEGMKRDHYLSFPWCVYDKLIHIKRQK 1248
            + GS     +DD+YA ASAWYHVTYHP YWG YNEGM  DH+LSFPWCVYDKLI IKR K
Sbjct: 582  KMGSGTYAGADDVYAIASAWYHVTYHPYYWGCYNEGMYHDHFLSFPWCVYDKLIQIKRDK 641

Query: 1249 AKKVPEYQSLEE 1284
               +  +Q  E+
Sbjct: 642  -MSISHFQKPED 652


>emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
          Length = 654

 Score =  589 bits (1518), Expect = e-166
 Identities = 292/442 (66%), Positives = 340/442 (76%), Gaps = 5/442 (1%)
 Frame = +1

Query: 1    QTFRXXXXXXXXXXXRIYIPNGRSLMGCLDETRTLEYGEVFIQISHAGRKQNGNGGLFAS 180
            QTFR           RI++PNGRS+MGCLDETRTLEYGEVF+QIS  G +Q+    L   
Sbjct: 223  QTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFR 282

Query: 181  SSTGSHQRNRIVEGTVVVAKNPCLHPGDVRVLRAVNEPGLHHMVDCVVFPQKGIRPHPNE 360
             S GSH  N I+EG +VVAKNPCLHPGDVRVL AVN P LHHMVDCVVFPQKG RPHPNE
Sbjct: 283  GS-GSHHDNFILEGKIVVAKNPCLHPGDVRVLXAVNVPTLHHMVDCVVFPQKGKRPHPNE 341

Query: 361  CSGSDLDGDIYFVSWDHELIPPREVEPMDYTPAPPAIVDHDVKLEEVHEYFANYMVSDSL 540
            CSGSDLDGDIYFV WD +LIPP+++ PMDYTPAP          +EV EYF NY+V+DSL
Sbjct: 342  CSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAPT---------KEVEEYFTNYIVNDSL 392

Query: 541  GIIANAHTAFADKEQGMAESVACRELARLFSIAVDFPKTGAPAKIPPHLYVKEYPDFMEK 720
            GIIANAHT FADKE   A    C ELA+LFSIAVDFPKTG PA+IP +L VKEYPDFMEK
Sbjct: 393  GIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEK 452

Query: 721  PDKPTYESQRVIGKLFREVKDIVPHRSCIPSFTWEVAKRCYDHDMEVDGYAYYLDDAKQY 900
             DKPTYESQ VIGKLFREVKDI PH   I SFT +VA++ YD DMEV G+  Y+ DA  Y
Sbjct: 453  ADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYY 512

Query: 901  KEKYDFKLGNLMDTYGIKTEADILARGLVKESISYNRKKDADAIGEAVRSLRKEARKWFD 1080
            K +YD+KLGNLMD YGIKTE++IL+  +++ S S++R+KDA+AIG AV+SLRKEAR WF+
Sbjct: 513  KSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFN 572

Query: 1081 EKG----SNSDDIYAKASAWYHVTYHPNYWGAYNEGMKRDHYLSFPWCVYDKLIHIKRQK 1248
            + G    S +DD+YAKASAWYHVTYHP+YWG YNEGM RDH+LSFPWCVYDKLIH KR+K
Sbjct: 573  KMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKK 632

Query: 1249 -AKKVPEYQSLEEQFRRGVRFG 1311
             + +     SLE +  +G+R G
Sbjct: 633  MSGRSLHLSSLERRLSQGLRLG 654


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  588 bits (1515), Expect = e-165
 Identities = 282/420 (67%), Positives = 332/420 (79%), Gaps = 4/420 (0%)
 Frame = +1

Query: 1    QTFRXXXXXXXXXXXRIYIPNGRSLMGCLDETRTLEYGEVFIQISHAGRKQNGNGGLFAS 180
            QTFR           RI++PNGRS+MGCLDETRTLEYGEVF+QIS  G +Q+    L   
Sbjct: 679  QTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFY 738

Query: 181  SSTGSHQRNRIVEGTVVVAKNPCLHPGDVRVLRAVNEPGLHHMVDCVVFPQKGIRPHPNE 360
             S GSH  N I+EG VVVAKNPCLHPGDVR+L AV+ P LHHMVDCVVFPQKG+RPHP+E
Sbjct: 739  GS-GSHHDNFILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDE 797

Query: 361  CSGSDLDGDIYFVSWDHELIPPREVEPMDYTPAPPAIVDHDVKLEEVHEYFANYMVSDSL 540
            CSGSDLDGDIYFV WDH+LIPPR++ PMDYTPAP  ++DHDV +EEV EYF NY+ +D L
Sbjct: 798  CSGSDLDGDIYFVCWDHDLIPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKL 857

Query: 541  GIIANAHTAFADKEQGMAESVACRELARLFSIAVDFPKTGAPAKIPPHLYVKEYPDFMEK 720
            GIIANAHT FADKE   A    C+ELA+LFSIA++FPKTG PA+IP HL+VKEYPDFMEK
Sbjct: 858  GIIANAHTVFADKEYDKALCPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEK 917

Query: 721  PDKPTYESQRVIGKLFREVKDIVPHRSCIPSFTWEVAKRCYDHDMEVDGYAYYLDDAKQY 900
             +KPTYESQ VIGKLFREVKD+ PH   + SFT +VA + YD DMEVDG+  Y+ DA  Y
Sbjct: 918  ANKPTYESQSVIGKLFREVKDVAPHNYDVRSFTRDVAMQSYDADMEVDGFEDYVRDAFYY 977

Query: 901  KEKYDFKLGNLMDTYGIKTEADILARGLVKESISYNRKKDADAIGEAVRSLRKEARKWFD 1080
            K +YDFKLG+LMD  GI+TE++IL+  ++K S S++++KDA+AI  AVRSLRKEAR WF+
Sbjct: 978  KSQYDFKLGSLMDCCGIRTESEILSGSIMKMSKSFDKRKDAEAIALAVRSLRKEARTWFN 1037

Query: 1081 EKGS----NSDDIYAKASAWYHVTYHPNYWGAYNEGMKRDHYLSFPWCVYDKLIHIKRQK 1248
            + GS     +DD+YA ASAWYHVTYHP YWG YNEGM  DH+LSFPWCVYDKLI IKR K
Sbjct: 1038 KMGSGTYAGADDVYAIASAWYHVTYHPYYWGCYNEGMYHDHFLSFPWCVYDKLIQIKRDK 1097


>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1133

 Score =  583 bits (1504), Expect = e-164
 Identities = 284/442 (64%), Positives = 341/442 (77%), Gaps = 8/442 (1%)
 Frame = +1

Query: 1    QTFRXXXXXXXXXXXRIYIPNGRSLMGCLDETRTLEYGEVFIQISHAG-RKQNGNGGLFA 177
            QTFR           RI+IPNGRS+MGCLDETRTLE+G+VF++ S +  R    +  +F+
Sbjct: 692  QTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEHGQVFVKFSGSRFRNLYDSSDMFS 751

Query: 178  SSSTGSHQRNRIVEGTVVVAKNPCLHPGDVRVLRAVNEPGLHHMVDCVVFPQKGIRPHPN 357
                G      +++G+VVVAKNPCLHPGD+R+L+AV+ P LHHMVDCVVFPQKG RPHPN
Sbjct: 752  ERGRGQCY---LIKGSVVVAKNPCLHPGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPN 808

Query: 358  ECSGSDLDGDIYFVSWDHELIPPREVEPMDYTPAPPAIVDHDVKLEEVHEYFANYMVSDS 537
            ECSGSDLDGDIYFV WD ELIP +++ PMDYTP PP  +DHDV +EEV EYF NY+V+DS
Sbjct: 809  ECSGSDLDGDIYFVCWDPELIPSQQISPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDS 868

Query: 538  LGIIANAHTAFADKEQGMAESVACRELARLFSIAVDFPKTGAPAKIPPHLYVKEYPDFME 717
            LG+IANAHTA ADKE   A S  C ELAR FSIAVDFPKTG PA+IP +L  +EYPDFME
Sbjct: 869  LGVIANAHTAHADKESLKAMSEPCVELARKFSIAVDFPKTGVPAEIPSNLRAREYPDFME 928

Query: 718  KPDKPTYESQRVIGKLFREVKDIVPHRSCIPSFTWEVAKRCYDHDMEVDGYAYYLDDAKQ 897
            KPDKP+YES+ VIGKLFREVKDI P  S I SFT +VA++CYD DMEVDG+  Y+DDA  
Sbjct: 929  KPDKPSYESRNVIGKLFREVKDIAPRTSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFY 988

Query: 898  YKEKYDFKLGNLMDTYGIKTEADILARGLVKESISYNRKKDADAIGEAVRSLRKEARKWF 1077
            YK  YD+KLGNLM+ YGIKTEA++L+   +K S S+ +K+DA+AIG AVRSL+KEAR WF
Sbjct: 989  YKSNYDYKLGNLMEYYGIKTEAELLSGSFMKMSKSFTKKRDAEAIGMAVRSLKKEARSWF 1048

Query: 1078 DEKG----SNSDDIYAKASAWYHVTYHPNYWGAYNEGMKRDHYLSFPWCVYDKLIHIKRQ 1245
            +EKG    S +DD+ AKASAWYHVTYH NYWG YNEGM RDH+LSFPWCVYDKLI IKR+
Sbjct: 1049 NEKGSGLDSQADDVDAKASAWYHVTYHHNYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRR 1108

Query: 1246 KAKKVPE---YQSLEEQFRRGV 1302
             + ++       S+E QF RG+
Sbjct: 1109 NSARIRRSLILPSVERQFSRGL 1130