BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00004066
         (1701 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278350.1| PREDICTED: pentatricopeptide repeat-containi...   786   0.0  
ref|XP_004149531.1| PREDICTED: pentatricopeptide repeat-containi...   778   0.0  
ref|XP_002298285.1| predicted protein [Populus trichocarpa] gi|2...   775   0.0  
ref|XP_002532598.1| pentatricopeptide repeat-containing protein,...   764   0.0  
ref|XP_002443991.1| hypothetical protein SORBIDRAFT_07g005470 [S...   762   0.0  

>ref|XP_002278350.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040
            [Vitis vinifera] gi|302143502|emb|CBI22063.3| unnamed
            protein product [Vitis vinifera]
          Length = 548

 Score =  786 bits (2030), Expect = 0.0
 Identities = 389/507 (76%), Positives = 447/507 (88%)
 Frame = +3

Query: 180  PKIEIHRRIKVVSLGMLAPRKFMQRKKKVEVFKDAEDEANQKNWRKLMGEIDEVGSAVSI 359
            PK  + R ++VVS  MLAPRKFMQR+KK+EVF+DA DEA Q+ WR++M EI+EVGSAVS+
Sbjct: 37   PKSTVVRTLEVVS--MLAPRKFMQRRKKIEVFRDAADEAEQRKWRRMMKEIEEVGSAVSV 94

Query: 360  LRSQRIKNQALPRDLVLGTLVRFKQLRKWNLVSEILEWLRTQHWWDFNEMDFMMLIIAYG 539
            L +   KNQALPRDLVLGTLVRFKQL+KW+LVSEILEWL+TQ WWDF+EMDF+ML+ AYG
Sbjct: 95   LST---KNQALPRDLVLGTLVRFKQLKKWSLVSEILEWLQTQPWWDFSEMDFLMLVTAYG 151

Query: 540  KQGDFNRAERVLGYMNKKGYPPSVISHTALMEAYGKGGQYNKAEAIFRRMQSSGPEPSAF 719
            KQGDFN+AERV G M+KKGY PSVISHTALMEAYGKG QYNKAE++FRRM SSGPEPSA 
Sbjct: 152  KQGDFNKAERVFGDMHKKGYSPSVISHTALMEAYGKGKQYNKAESVFRRMLSSGPEPSAL 211

Query: 720  TYQIILKTFVEADKFEEAESIFETLLDDKISPLKPDQKMFHMMIYMYKKSGNYDKARKTF 899
            TYQ+ILK FVE +KF+EAE  FETLLDD+ SPLKPDQKMFHMMIYMY+K+GNY+KARK F
Sbjct: 212  TYQLILKIFVEGNKFKEAEETFETLLDDEKSPLKPDQKMFHMMIYMYRKAGNYEKARKIF 271

Query: 900  AKMPDRGVPQSTITFNSLMSFETDYKEVSRIYDQMQRAGLQPDVISYALLIKAYGKARRE 1079
              M +RGVPQST+T+NSLMSFET+YKEVS+ YDQMQRAGL+PDV+SYALLI AYGKARRE
Sbjct: 272  GLMRERGVPQSTVTYNSLMSFETNYKEVSKTYDQMQRAGLRPDVVSYALLINAYGKARRE 331

Query: 1080 DEALAVFEEMLDAGVRPTRKSYNILLDAFAVSGMVDEARTVFKSMRRDKCAPDIYSYTTM 1259
            +EALAVFEEMLDAGVRPT K+YNILLDAFA+SGMVD+ARTVFKSMRRD+C PDI SYTTM
Sbjct: 332  EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKSMRRDRCTPDICSYTTM 391

Query: 1260 LSAYVNASDMDGAEMFFRRLQQDGFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEMRLKGI 1439
            LSAYVNASDM+GAE FFRRL+QDGFEPNVVTYGTLIKGYAK++NLEKMMEKYEEM++ GI
Sbjct: 392  LSAYVNASDMEGAEKFFRRLKQDGFEPNVVTYGTLIKGYAKISNLEKMMEKYEEMQVHGI 451

Query: 1440 KANQTIFTTIMDAHGKNTDFGNAVIWFKEMGSCGFPPDQKAKNILLSLAKSAEEQKEANE 1619
            KANQ I+T +MDA+GKN DFG+AV WFKEMG CG PPD+KA NILLSLAK+  E++EAN 
Sbjct: 452  KANQAIYTAMMDAYGKNKDFGSAVFWFKEMGFCGVPPDRKATNILLSLAKTEAEKEEANL 511

Query: 1620 LVGLAGNTIDGGMGIGFSKNNDEDEDE 1700
            LVG +    +G M  G  K  DED+DE
Sbjct: 512  LVGYSSKYSNGQMDNGSFKCADEDDDE 538


>ref|XP_004149531.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040-like
            [Cucumis sativus]
          Length = 580

 Score =  778 bits (2009), Expect = 0.0
 Identities = 376/520 (72%), Positives = 451/520 (86%)
 Frame = +3

Query: 141  NLSKAKVLENLSIPKIEIHRRIKVVSLGMLAPRKFMQRKKKVEVFKDAEDEANQKNWRKL 320
            N SK +   +     + + R++ V  +GML PRKF+Q++KK+EVFKD  DEA QKNWR+L
Sbjct: 17   NWSKLQAQTHSISSNVNVRRKLVVTCMGMLTPRKFLQKRKKLEVFKDEADEAEQKNWRRL 76

Query: 321  MGEIDEVGSAVSILRSQRIKNQALPRDLVLGTLVRFKQLRKWNLVSEILEWLRTQHWWDF 500
            M EI+E GSAVS+LRS+RIKN+A+P+DLVLGTLVRFKQL+KWNLVSEILEWLRTQ WW+F
Sbjct: 77   MNEIEETGSAVSVLRSERIKNEAIPKDLVLGTLVRFKQLKKWNLVSEILEWLRTQSWWNF 136

Query: 501  NEMDFMMLIIAYGKQGDFNRAERVLGYMNKKGYPPSVISHTALMEAYGKGGQYNKAEAIF 680
            +EMDF+MLI AYGK GDFNRAE+VL  MNKKGY P+V+SHTALMEAYG+G +YN AEAIF
Sbjct: 137  SEMDFVMLITAYGKLGDFNRAEKVLNLMNKKGYAPNVVSHTALMEAYGRGRRYNNAEAIF 196

Query: 681  RRMQSSGPEPSAFTYQIILKTFVEADKFEEAESIFETLLDDKISPLKPDQKMFHMMIYMY 860
            RRMQS GPEPSA TYQI+LKTFVE  KF+EAE +F++LL+ +   LKPDQKMFHM+IYM+
Sbjct: 197  RRMQSGGPEPSALTYQIMLKTFVEGSKFKEAEELFDSLLNKEKPVLKPDQKMFHMIIYMF 256

Query: 861  KKSGNYDKARKTFAKMPDRGVPQSTITFNSLMSFETDYKEVSRIYDQMQRAGLQPDVISY 1040
            KK+GNY+KARK FA+M  RGVPQ+T+T+NSLMSFET+YKEVS+IYDQMQRAGLQPDV+SY
Sbjct: 257  KKAGNYEKARKVFAEMAARGVPQTTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSY 316

Query: 1041 ALLIKAYGKARREDEALAVFEEMLDAGVRPTRKSYNILLDAFAVSGMVDEARTVFKSMRR 1220
            ALLI AYGKARRE+EALAVFEEMLDAG+RPT K+YNILLDAFA+SGMV++A+ VFKSM+R
Sbjct: 317  ALLISAYGKARREEEALAVFEEMLDAGIRPTHKAYNILLDAFAISGMVEQAKIVFKSMKR 376

Query: 1221 DKCAPDIYSYTTMLSAYVNASDMDGAEMFFRRLQQDGFEPNVVTYGTLIKGYAKMNNLEK 1400
            D+C+PDI SYTTMLSAYVNASDM+GAE FFRRL+QDGF PNVVTYGTLIKGYAK+NNLEK
Sbjct: 377  DRCSPDICSYTTMLSAYVNASDMEGAENFFRRLKQDGFRPNVVTYGTLIKGYAKINNLEK 436

Query: 1401 MMEKYEEMRLKGIKANQTIFTTIMDAHGKNTDFGNAVIWFKEMGSCGFPPDQKAKNILLS 1580
            M+++YEEM++ GI+ NQTI TTIMDA+GKN DFG+AVIWF E+ SCG  PDQKAKNILLS
Sbjct: 437  MIKRYEEMKVNGIRVNQTILTTIMDAYGKNKDFGSAVIWFNEIESCGLRPDQKAKNILLS 496

Query: 1581 LAKSAEEQKEANELVGLAGNTIDGGMGIGFSKNNDEDEDE 1700
            LAK+AEE  EAN+LVG +  +     G  FS++  +DE+E
Sbjct: 497  LAKTAEELDEANQLVGYSSQSSSPQRGGKFSRSIADDEEE 536


>ref|XP_002298285.1| predicted protein [Populus trichocarpa] gi|222845543|gb|EEE83090.1|
            predicted protein [Populus trichocarpa]
          Length = 575

 Score =  775 bits (2000), Expect = 0.0
 Identities = 378/515 (73%), Positives = 451/515 (87%), Gaps = 4/515 (0%)
 Frame = +3

Query: 168  NLSIPKIEIHRRIKVVSLGMLAPRKFMQRKKKVEVFKDAEDEANQKNWRKLMGEIDEVGS 347
            N  I  I+IHRR++VVS+GML+PRKF+Q+++KVEVFKDA DEA+QKNWR+LM +I++ GS
Sbjct: 4    NPFIANIKIHRRLEVVSMGMLSPRKFLQKRRKVEVFKDASDEADQKNWRRLMKQIEDTGS 63

Query: 348  AVSILRSQRIKNQALPRDLVLGTLVRFKQLRKWNLVSEILEWLRTQHWWDFNEMDFMMLI 527
            AVS+LR +RIK   LPRDLVLGTLVRFKQL+KW+LVSEILEWL++QHWWDFNEMDF+MLI
Sbjct: 64   AVSVLRRERIKKDGLPRDLVLGTLVRFKQLKKWDLVSEILEWLQSQHWWDFNEMDFLMLI 123

Query: 528  IAYGKQGDFNRAERVLGYMNKKGYPPSVISHTALMEAYGKGGQYNKAEAIFRRMQSSGPE 707
             AYGK GDFN AE VL  MN  GY P+V+SHTALMEAYG+GG+YN AEAIFRRMQ+SGPE
Sbjct: 124  TAYGKLGDFNGAEMVLRSMNGNGYVPNVVSHTALMEAYGRGGRYNNAEAIFRRMQTSGPE 183

Query: 708  PSAFTYQIILKTFVEADKFEEAESIFETLLDDKISPLKPDQKMFHMMIYMYKKSGNYDKA 887
            PSA TYQIILKTFVE +KF+EAE +FETLL+ + SPL+PDQKMFHMMIYM KK+GNY+KA
Sbjct: 184  PSALTYQIILKTFVEGNKFKEAEEVFETLLNKENSPLEPDQKMFHMMIYMQKKAGNYEKA 243

Query: 888  RKTFAKMPDRGVPQSTITFNSLMSFETDYKEVSRIYDQMQRAGLQPDVISYALLIKAYGK 1067
            RK FA M +RGVPQST+T+NSLMSFET+YKEVS+IYDQMQR+GL+PDV+SYALLIKAYG+
Sbjct: 244  RKVFALMAERGVPQSTVTYNSLMSFETNYKEVSKIYDQMQRSGLRPDVVSYALLIKAYGR 303

Query: 1068 ARREDEALAVFEEMLDAGVRPTRKSYNILLDAFAVSGMVDEARTVFKSMRRDKCAPDIYS 1247
            ARRE+EALAVFEEMLDAGVRP+ K+YNILLDAFA+SGMV++AR VFKSMRRD+C PD+ S
Sbjct: 304  ARREEEALAVFEEMLDAGVRPSHKAYNILLDAFAISGMVEQARVVFKSMRRDRCTPDLCS 363

Query: 1248 YTTMLSAYVNASDMDGAEMFFRRLQQDGFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEMR 1427
            YTTMLSAYVNASDM+GAE FF+RL+QDG +PNVVTYG LIKG+AK+NNLEKMME YEEM+
Sbjct: 364  YTTMLSAYVNASDMEGAENFFKRLRQDGLKPNVVTYGALIKGHAKVNNLEKMMEIYEEMQ 423

Query: 1428 LKGIKANQTIFTTIMDAHGKNTDFGNAVIWFKEMGSCGFPPDQKAKNILLSLAKSAEEQK 1607
            L  IKANQTI TTIMDA+GKN DFG+AVIW+KEM   G PPDQKA+NILLSLAK+ +EQK
Sbjct: 424  LNSIKANQTILTTIMDAYGKNKDFGSAVIWYKEMEHHGVPPDQKAQNILLSLAKTQDEQK 483

Query: 1608 EANELVGLAGN----TIDGGMGIGFSKNNDEDEDE 1700
            EA++LVG   +    +I+G         +D++ D+
Sbjct: 484  EASQLVGYPDDCGIQSINGASRFADDDGSDDETDD 518


>ref|XP_002532598.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223527686|gb|EEF29795.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 553

 Score =  764 bits (1972), Expect = 0.0
 Identities = 379/516 (73%), Positives = 446/516 (86%), Gaps = 2/516 (0%)
 Frame = +3

Query: 135  SSNLSKAKVLENLSIPKIEIHRRIKV--VSLGMLAPRKFMQRKKKVEVFKDAEDEANQKN 308
            S+N  + KV+ N +       RR++V  V+ GML+PRKF+QR+KKVEVFKD  DEA  KN
Sbjct: 15   STNWRQPKVVVNSNAVNWNGKRRVEVTVVARGMLSPRKFLQRRKKVEVFKDEADEAYHKN 74

Query: 309  WRKLMGEIDEVGSAVSILRSQRIKNQALPRDLVLGTLVRFKQLRKWNLVSEILEWLRTQH 488
            WR LM +I+E  S VS+L+S+ I NQ+LP+ LVLGTLVRFKQL+KW+LVS+ILEW+RTQ 
Sbjct: 75   WRGLMRQIEETDSPVSVLKSKLINNQSLPKHLVLGTLVRFKQLKKWHLVSQILEWVRTQS 134

Query: 489  WWDFNEMDFMMLIIAYGKQGDFNRAERVLGYMNKKGYPPSVISHTALMEAYGKGGQYNKA 668
            WWDFNEMD +MLI AYGKQG+F+ AE+VL YMNK GY P+V+SHTALMEAYG+G +YN A
Sbjct: 135  WWDFNEMDSLMLITAYGKQGNFSAAEKVLSYMNKMGYVPNVVSHTALMEAYGRGARYNNA 194

Query: 669  EAIFRRMQSSGPEPSAFTYQIILKTFVEADKFEEAESIFETLLDDKISPLKPDQKMFHMM 848
            EAIFRRMQSSGP+PSA TYQIILK FVE +KF+EAE +FETLLD++ SPLKPDQKMFHMM
Sbjct: 195  EAIFRRMQSSGPKPSAVTYQIILKNFVEGNKFKEAEEVFETLLDEEKSPLKPDQKMFHMM 254

Query: 849  IYMYKKSGNYDKARKTFAKMPDRGVPQSTITFNSLMSFETDYKEVSRIYDQMQRAGLQPD 1028
            IYM++K+GNY+KAR+ FA M  RGVP+ST+T+NSLMSFET+YKEVS+IYDQMQR+GLQPD
Sbjct: 255  IYMHRKAGNYEKARQIFALMTQRGVPKSTVTYNSLMSFETNYKEVSKIYDQMQRSGLQPD 314

Query: 1029 VISYALLIKAYGKARREDEALAVFEEMLDAGVRPTRKSYNILLDAFAVSGMVDEARTVFK 1208
            VISYALLI AYGKARREDEALAVFEEMLDAGVRPT K+YNILLDAFA+SGMV++ARTVFK
Sbjct: 315  VISYALLINAYGKARREDEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQARTVFK 374

Query: 1209 SMRRDKCAPDIYSYTTMLSAYVNASDMDGAEMFFRRLQQDGFEPNVVTYGTLIKGYAKMN 1388
            SMRRD+  PD+ SYTTMLSAYVNASDM GAE FF RL+QDG EPNVVTYG LIKGYAK N
Sbjct: 375  SMRRDRYTPDLCSYTTMLSAYVNASDMAGAENFFNRLKQDGLEPNVVTYGALIKGYAKTN 434

Query: 1389 NLEKMMEKYEEMRLKGIKANQTIFTTIMDAHGKNTDFGNAVIWFKEMGSCGFPPDQKAKN 1568
            NL+KMMEKYEEM+L+G+KANQTIFTTIMDA+GKN DFG+AVIW+KEM   G PPDQKAKN
Sbjct: 435  NLDKMMEKYEEMQLRGVKANQTIFTTIMDAYGKNKDFGSAVIWYKEMEQYGVPPDQKAKN 494

Query: 1569 ILLSLAKSAEEQKEANELVGLAGNTIDGGMGIGFSK 1676
            ILLSLAK+A+EQKEAN++VG +G+  D     G S+
Sbjct: 495  ILLSLAKTADEQKEANQMVGHSGDCGDAHSIFGSSR 530


>ref|XP_002443991.1| hypothetical protein SORBIDRAFT_07g005470 [Sorghum bicolor]
            gi|241940341|gb|EES13486.1| hypothetical protein
            SORBIDRAFT_07g005470 [Sorghum bicolor]
          Length = 602

 Score =  762 bits (1967), Expect = 0.0
 Identities = 378/534 (70%), Positives = 452/534 (84%), Gaps = 2/534 (0%)
 Frame = +3

Query: 105  AIQSHTLLSFSSNLSKAKVLENLSI--PKIEIHRRIKVVSLGMLAPRKFMQRKKKVEVFK 278
            AI S + LSF S+L KAKV   L I   KI+ + R++VV  GMLA RKFMQRKKK EVFK
Sbjct: 5    AIGSQSPLSFPSSLCKAKVSSGLPIYNVKIKSNHRLEVVCRGMLATRKFMQRKKKEEVFK 64

Query: 279  DAEDEANQKNWRKLMGEIDEVGSAVSILRSQRIKNQALPRDLVLGTLVRFKQLRKWNLVS 458
            DA DEA Q NWR++M EI+E GSAV IL++QR     LPRD++LGTLVRFKQL+KWN+VS
Sbjct: 65   DAADEAEQMNWRRMMREIEEAGSAVPILKTQRSGKGPLPRDVILGTLVRFKQLKKWNIVS 124

Query: 459  EILEWLRTQHWWDFNEMDFMMLIIAYGKQGDFNRAERVLGYMNKKGYPPSVISHTALMEA 638
            EILEWLRTQHWWDF+EMDF+ML+ AYGK GDF+RAERVL YMNKKGY PSVIS T LMEA
Sbjct: 125  EILEWLRTQHWWDFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYQPSVISQTGLMEA 184

Query: 639  YGKGGQYNKAEAIFRRMQSSGPEPSAFTYQIILKTFVEADKFEEAESIFETLLDDKISPL 818
            YG+G QY KAEA+FRRMQ+SGPEPS  TYQIILK+ VE DK++EAE+IFE LL++K +  
Sbjct: 185  YGRGKQYRKAEAVFRRMQTSGPEPSPVTYQIILKSLVEGDKYKEAEAIFEDLLNEKRTSF 244

Query: 819  KPDQKMFHMMIYMYKKSGNYDKARKTFAKMPDRGVPQSTITFNSLMSFETDYKEVSRIYD 998
            KPDQKMFHMMIYMYKK+G+Y +ARK FA+M +R +P ST+TFNSLMSFETDYKEVS IYD
Sbjct: 245  KPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERKIPLSTVTFNSLMSFETDYKEVSSIYD 304

Query: 999  QMQRAGLQPDVISYALLIKAYGKARREDEALAVFEEMLDAGVRPTRKSYNILLDAFAVSG 1178
            QMQRAG++PDV+SY+LLIKAYGKARRE+EALAVFEEMLDAGVRPTRKSYNILLDAFA+SG
Sbjct: 305  QMQRAGMKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLDAFAISG 364

Query: 1179 MVDEARTVFKSMRRDKCAPDIYSYTTMLSAYVNASDMDGAEMFFRRLQQDGFEPNVVTYG 1358
            +VDEA TVFK+MRR +  PD+ SYTTM+ AYVNASDM+GAE FFRR++ DG +PNVV YG
Sbjct: 365  LVDEANTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMNGAEKFFRRIKDDGLKPNVVVYG 424

Query: 1359 TLIKGYAKMNNLEKMMEKYEEMRLKGIKANQTIFTTIMDAHGKNTDFGNAVIWFKEMGSC 1538
            TL+KGY+K+NN+EK+M  YE MR++G++ NQTI+TTIMDAHG+N+DFGNAVIWFKEM + 
Sbjct: 425  TLMKGYSKLNNVEKVMRVYERMRIQGVEPNQTIYTTIMDAHGRNSDFGNAVIWFKEMEAR 484

Query: 1539 GFPPDQKAKNILLSLAKSAEEQKEANELVGLAGNTIDGGMGIGFSKNNDEDEDE 1700
            G+PPDQKAKNILLSLA + EEQ+EANELVG      +G + +    +N+E +D+
Sbjct: 485  GYPPDQKAKNILLSLANTPEEQQEANELVG------NGAIQLEVKPDNEEVDDD 532