BLASTX nr result
ID: Coptis25_contig00004007
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00004007
(757 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002266770.1| PREDICTED: WD repeat-containing protein 75 [... 194 1e-82
ref|XP_002324467.1| predicted protein [Populus trichocarpa] gi|2... 194 1e-69
ref|XP_002329663.1| predicted protein [Populus trichocarpa] gi|2... 197 5e-69
ref|XP_002884187.1| transducin family protein [Arabidopsis lyrat... 172 2e-65
gb|AAC09025.1| unknown protein [Arabidopsis thaliana] 171 9e-65
>ref|XP_002266770.1| PREDICTED: WD repeat-containing protein 75 [Vitis vinifera]
gi|296087114|emb|CBI33488.3| unnamed protein product
[Vitis vinifera]
Length = 815
Score = 194 bits (493), Expect(3) = 1e-82
Identities = 90/131 (68%), Positives = 108/131 (82%)
Frame = +1
Query: 364 VIYEPHSDAGISALAFHPTRDMAVSSSFGGDFKVWVCSSNIRKKDQVPSKSGWRCHSFGS 543
+IYEPH DAGISA+AFHPTR MAVSSS+GGDFK+W CS I+++DQ SGW CH+ GS
Sbjct: 475 IIYEPHRDAGISAIAFHPTRHMAVSSSYGGDFKIWACSHEIQQRDQTLQNSGWTCHAVGS 534
Query: 544 YKKRPMTAVAFSADGSVLAVAAETIITLWDADKNVLVTVIGEALAKIVSLSFVGKSEFIV 723
YK++PMTA FSADGSVLA+AAET+IT+WD +KNVLV VIGE L I LSF+GKSE++V
Sbjct: 535 YKRKPMTAATFSADGSVLAIAAETVITIWDPEKNVLVAVIGETLEPITMLSFIGKSEYLV 594
Query: 724 SASLDSVTQLS 756
SAS S +QLS
Sbjct: 595 SASRGSKSQLS 605
Score = 96.3 bits (238), Expect(3) = 1e-82
Identities = 44/70 (62%), Positives = 56/70 (80%)
Frame = +2
Query: 2 KSISGIELCCSFPEIYGGLRGGFVFDHSAGLVGVQTESYSIQFYSLFDNHEISQIQVCER 181
KSISGI+L CSFPEIY GL F+FD +AGLV +TE+Y IQFYSLFD+ E ++Q+CER
Sbjct: 357 KSISGIKLPCSFPEIYEGLHSRFIFDQTAGLVAFRTENYCIQFYSLFDDRENFEVQICER 416
Query: 182 SHQADNEVTV 211
+HQ ++VTV
Sbjct: 417 NHQPSDDVTV 426
Score = 64.3 bits (155), Expect(3) = 1e-82
Identities = 30/49 (61%), Positives = 37/49 (75%)
Frame = +3
Query: 219 LVLALTAVSMDGSKLSTAEVKLPEEGIGGLVCLKFWDLGSRKGEFILSS 365
+V+ L +S DGS +STAE K PEEG+GGLVCLKFW GS+ FILS+
Sbjct: 426 VVVTLMVLSPDGSMMSTAETKFPEEGLGGLVCLKFWTSGSQSKGFILST 474
>ref|XP_002324467.1| predicted protein [Populus trichocarpa] gi|222865901|gb|EEF03032.1|
predicted protein [Populus trichocarpa]
Length = 811
Score = 194 bits (492), Expect(2) = 1e-69
Identities = 95/156 (60%), Positives = 115/156 (73%)
Frame = +1
Query: 289 KRGLGVSFVSSFGIWDRARENSYCLVIYEPHSDAGISALAFHPTRDMAVSSSFGGDFKVW 468
+ GLG F + +E S ++YEPH DAGISA+AFHPTR MAVSSS+GGDFKVW
Sbjct: 451 EEGLGGLVCLKFWAFGSQKEFSLTTIVYEPHRDAGISAIAFHPTRPMAVSSSYGGDFKVW 510
Query: 469 VCSSNIRKKDQVPSKSGWRCHSFGSYKKRPMTAVAFSADGSVLAVAAETIITLWDADKNV 648
+C+ IR+ D+ SGW CH+ GSYKK+ MTA FS+DGSVLAVAAET+ITLWDADKN+
Sbjct: 511 ICNKGIRQVDEPLPNSGWTCHAVGSYKKKSMTAATFSSDGSVLAVAAETVITLWDADKNI 570
Query: 649 LVTVIGEALAKIVSLSFVGKSEFIVSASLDSVTQLS 756
LV VIG+ L IV+LSF G SE++VSAS QLS
Sbjct: 571 LVAVIGDTLTPIVNLSFAGTSEYLVSASWGLKPQLS 606
Score = 96.3 bits (238), Expect(2) = 1e-69
Identities = 45/70 (64%), Positives = 55/70 (78%)
Frame = +2
Query: 2 KSISGIELCCSFPEIYGGLRGGFVFDHSAGLVGVQTESYSIQFYSLFDNHEISQIQVCER 181
KSISGI+L CSFPE+Y GLR G FD +AGLV + TE+Y IQ YSL D+ IS++QVCER
Sbjct: 359 KSISGIKLPCSFPEMYNGLRSGIAFDRNAGLVALPTENYCIQLYSLLDDRGISEVQVCER 418
Query: 182 SHQADNEVTV 211
+HQ +EVTV
Sbjct: 419 NHQPGDEVTV 428
Score = 67.0 bits (162), Expect = 4e-09
Identities = 32/49 (65%), Positives = 41/49 (83%)
Frame = +3
Query: 219 LVLALTAVSMDGSKLSTAEVKLPEEGIGGLVCLKFWDLGSRKGEFILSS 365
+V+ L +S+DGS +STAEVKLPEEG+GGLVCLKFW GS+K EF L++
Sbjct: 428 VVVTLAVLSLDGSMMSTAEVKLPEEGLGGLVCLKFWAFGSQK-EFSLTT 475
>ref|XP_002329663.1| predicted protein [Populus trichocarpa] gi|222870544|gb|EEF07675.1|
predicted protein [Populus trichocarpa]
Length = 812
Score = 197 bits (501), Expect(2) = 5e-69
Identities = 94/152 (61%), Positives = 119/152 (78%)
Frame = +1
Query: 301 GVSFVSSFGIWDRARENSYCLVIYEPHSDAGISALAFHPTRDMAVSSSFGGDFKVWVCSS 480
G+ + + + + +E S ++YEPH DAGISA+AFHPTR MAVSSS+GGDFKVWVC++
Sbjct: 456 GLVCLKFWALGSQNKEFSLSTIVYEPHRDAGISAIAFHPTRPMAVSSSYGGDFKVWVCNN 515
Query: 481 NIRKKDQVPSKSGWRCHSFGSYKKRPMTAVAFSADGSVLAVAAETIITLWDADKNVLVTV 660
I++ D+ SGW CH+ GSYKK+PMTA FS+DGSVLAVAAET+ITLWDADKN+LV V
Sbjct: 516 GIQEMDKPLPNSGWTCHAVGSYKKKPMTAATFSSDGSVLAVAAETVITLWDADKNILVAV 575
Query: 661 IGEALAKIVSLSFVGKSEFIVSASLDSVTQLS 756
IGE L +V+L+F GKSE++VSAS S QLS
Sbjct: 576 IGETLMPVVNLAFAGKSEYLVSASWGSKPQLS 607
Score = 90.5 bits (223), Expect(2) = 5e-69
Identities = 43/70 (61%), Positives = 55/70 (78%)
Frame = +2
Query: 2 KSISGIELCCSFPEIYGGLRGGFVFDHSAGLVGVQTESYSIQFYSLFDNHEISQIQVCER 181
KSISGI+L CSFPE+ GL+ G FD +AGLV ++TE+Y IQ YSLFD+ IS++ VCER
Sbjct: 359 KSISGIKLPCSFPEMCNGLQSGIAFDCNAGLVALRTENYCIQLYSLFDDRGISEVVVCER 418
Query: 182 SHQADNEVTV 211
+HQ +EVTV
Sbjct: 419 NHQPGDEVTV 428
Score = 71.6 bits (174), Expect = 2e-10
Identities = 33/49 (67%), Positives = 41/49 (83%)
Frame = +3
Query: 219 LVLALTAVSMDGSKLSTAEVKLPEEGIGGLVCLKFWDLGSRKGEFILSS 365
+V+ L +S+DGS +STAEVKLPEEG+GGLVCLKFW LGS+ EF LS+
Sbjct: 428 VVVTLAVLSLDGSMMSTAEVKLPEEGLGGLVCLKFWALGSQNKEFSLST 476
>ref|XP_002884187.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]
gi|297330027|gb|EFH60446.1| transducin family protein
[Arabidopsis lyrata subsp. lyrata]
Length = 803
Score = 172 bits (437), Expect(3) = 2e-65
Identities = 79/123 (64%), Positives = 99/123 (80%)
Frame = +1
Query: 364 VIYEPHSDAGISALAFHPTRDMAVSSSFGGDFKVWVCSSNIRKKDQVPSKSGWRCHSFGS 543
++YEPH DAG+SA+AFHPTR MAVS+SFGGDFK+WVC+S+ K+Q S W CH+ GS
Sbjct: 478 IVYEPHRDAGVSAIAFHPTRSMAVSTSFGGDFKIWVCNSD---KNQTDKDSSWICHAVGS 534
Query: 544 YKKRPMTAVAFSADGSVLAVAAETIITLWDADKNVLVTVIGEALAKIVSLSFVGKSEFIV 723
YKK+PMTA AFS DG+VLAVAAE +ITLW+ DKN+L++V+G L I L F GKSEF+V
Sbjct: 535 YKKKPMTAAAFSGDGTVLAVAAENVITLWNPDKNILLSVLGATLTPITKLCFAGKSEFLV 594
Query: 724 SAS 732
+AS
Sbjct: 595 AAS 597
Score = 70.1 bits (170), Expect(3) = 2e-65
Identities = 32/70 (45%), Positives = 48/70 (68%)
Frame = +2
Query: 2 KSISGIELCCSFPEIYGGLRGGFVFDHSAGLVGVQTESYSIQFYSLFDNHEISQIQVCER 181
++ISGI+ S P +Y GL FD S+G+ + TE+Y +Q Y+L ++ IS+IQVCER
Sbjct: 360 RTISGIKAPPSLPRMYEGLASTVAFDRSSGIAALCTENYCVQLYNLLNDRGISEIQVCER 419
Query: 182 SHQADNEVTV 211
+HQ +E+TV
Sbjct: 420 NHQPGDEITV 429
Score = 54.3 bits (129), Expect(3) = 2e-65
Identities = 27/49 (55%), Positives = 34/49 (69%)
Frame = +3
Query: 219 LVLALTAVSMDGSKLSTAEVKLPEEGIGGLVCLKFWDLGSRKGEFILSS 365
+V+ A+S+DGS +ST EVKLPE+GIGGLV LKFW F LS+
Sbjct: 429 VVVTAVALSLDGSVMSTTEVKLPEDGIGGLVSLKFWVSEPDSKTFTLST 477
>gb|AAC09025.1| unknown protein [Arabidopsis thaliana]
Length = 812
Score = 171 bits (432), Expect(3) = 9e-65
Identities = 77/123 (62%), Positives = 98/123 (79%)
Frame = +1
Query: 364 VIYEPHSDAGISALAFHPTRDMAVSSSFGGDFKVWVCSSNIRKKDQVPSKSGWRCHSFGS 543
++YEPH DAG+SA+ FHPTR MAVS+SFGGDFK+WVC+S+ K+Q S W CH+ GS
Sbjct: 478 IVYEPHRDAGVSAIVFHPTRSMAVSTSFGGDFKIWVCNSD---KNQTDKDSSWICHAVGS 534
Query: 544 YKKRPMTAVAFSADGSVLAVAAETIITLWDADKNVLVTVIGEALAKIVSLSFVGKSEFIV 723
YKK+PMTA AFS DG+V+AVAAE +ITLW+ DKN+L++V+G L I L F GKSEF+V
Sbjct: 535 YKKKPMTAAAFSGDGTVMAVAAENVITLWNPDKNILLSVLGSTLTPITKLCFAGKSEFLV 594
Query: 724 SAS 732
+AS
Sbjct: 595 AAS 597
Score = 69.3 bits (168), Expect(3) = 9e-65
Identities = 32/70 (45%), Positives = 48/70 (68%)
Frame = +2
Query: 2 KSISGIELCCSFPEIYGGLRGGFVFDHSAGLVGVQTESYSIQFYSLFDNHEISQIQVCER 181
++ISGI+ S P +Y GL FD S+G+ + TE+Y +Q Y+L ++ IS+IQVCER
Sbjct: 360 RTISGIKPPPSLPRMYEGLASTVAFDRSSGIAALCTENYCVQLYNLLNDRGISEIQVCER 419
Query: 182 SHQADNEVTV 211
+HQ +E+TV
Sbjct: 420 NHQPGDEITV 429
Score = 54.7 bits (130), Expect(3) = 9e-65
Identities = 27/49 (55%), Positives = 34/49 (69%)
Frame = +3
Query: 219 LVLALTAVSMDGSKLSTAEVKLPEEGIGGLVCLKFWDLGSRKGEFILSS 365
+V+ A+S+DGS +ST EVKLPE+GIGGLV LKFW F LS+
Sbjct: 429 VVVTAVALSLDGSVMSTTEVKLPEDGIGGLVSLKFWASEPDSKTFTLST 477