BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003960
         (736 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277425.1| PREDICTED: 60S ribosomal protein L27-3 isofo...   244   1e-62
ref|XP_002267478.1| PREDICTED: 60S ribosomal protein L27 [Vitis ...   242   5e-62
emb|CAN79575.1| hypothetical protein VITISV_032808 [Vitis vinifera]   240   2e-61
gb|AFW90619.1| ribosomal protein L27 [Solanum tuberosum]              239   3e-61
dbj|BAA96367.1| ribosomal protein L27 [Panax ginseng]                 239   4e-61

>ref|XP_002277425.1| PREDICTED: 60S ribosomal protein L27-3 isoform 1 [Vitis vinifera]
          Length = 135

 Score =  244 bits (623), Expect = 1e-62
 Identities = 116/135 (85%), Positives = 128/135 (94%)
 Frame = +3

Query: 105 MVKFLKPNKAVIVLQGRYAGRKAVIIKSYDDGTRDRPYGHCLVAGISKYPKKVIRKDSAK 284
           MVKFLK NKAV+VLQGR+AGRKAVI++S+DDGTRDRPYGHCLVAGI+KYPKKVIRKDSAK
Sbjct: 1   MVKFLKQNKAVVVLQGRFAGRKAVIVRSFDDGTRDRPYGHCLVAGIAKYPKKVIRKDSAK 60

Query: 285 KTAKKSRVKTFVKLVNYNHIMPTRYTLDVDLKDVASLETFGSRDKKVTAAKEVKARFEER 464
           KTAKKSRVK F+KLVNYNH+MPTRYTLDVDLKDV +++   SRDKKVTAAKE KARFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYNHLMPTRYTLDVDLKDVVTVDALQSRDKKVTAAKETKARFEER 120

Query: 465 FKTGKNRWFFSKLRF 509
           FKTGKNRWFF+KLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135


>ref|XP_002267478.1| PREDICTED: 60S ribosomal protein L27 [Vitis vinifera]
          Length = 135

 Score =  242 bits (618), Expect = 5e-62
 Identities = 116/135 (85%), Positives = 126/135 (93%)
 Frame = +3

Query: 105 MVKFLKPNKAVIVLQGRYAGRKAVIIKSYDDGTRDRPYGHCLVAGISKYPKKVIRKDSAK 284
           MVKFLKPNKAV++LQGR+AGRKAVI++S+DDGTRDRPYGHCLVAGI+KYPKKVIRKDSAK
Sbjct: 1   MVKFLKPNKAVVLLQGRFAGRKAVIVRSFDDGTRDRPYGHCLVAGIAKYPKKVIRKDSAK 60

Query: 285 KTAKKSRVKTFVKLVNYNHIMPTRYTLDVDLKDVASLETFGSRDKKVTAAKEVKARFEER 464
           KTAKKSRVK F+KLVNYNHIMPTRYTLDVDLKDV S +   SRDKKVTAAKE K + EER
Sbjct: 61  KTAKKSRVKAFIKLVNYNHIMPTRYTLDVDLKDVVSPDVLQSRDKKVTAAKETKKKLEER 120

Query: 465 FKTGKNRWFFSKLRF 509
           FKTGKNRWFFSKLRF
Sbjct: 121 FKTGKNRWFFSKLRF 135


>emb|CAN79575.1| hypothetical protein VITISV_032808 [Vitis vinifera]
          Length = 135

 Score =  240 bits (613), Expect = 2e-61
 Identities = 115/135 (85%), Positives = 126/135 (93%)
 Frame = +3

Query: 105 MVKFLKPNKAVIVLQGRYAGRKAVIIKSYDDGTRDRPYGHCLVAGISKYPKKVIRKDSAK 284
           MVKFLKPNKAV++LQGR+AGRKAVI++S+DDGTRDRPYGHCLVAGI+KYPKKVIRKDSAK
Sbjct: 1   MVKFLKPNKAVVLLQGRFAGRKAVIVRSFDDGTRDRPYGHCLVAGIAKYPKKVIRKDSAK 60

Query: 285 KTAKKSRVKTFVKLVNYNHIMPTRYTLDVDLKDVASLETFGSRDKKVTAAKEVKARFEER 464
           KTAKKSRVK F+KLVNYNHIMPTRYTLDV+LKDV S +   SRDKKVTAAKE K + EER
Sbjct: 61  KTAKKSRVKAFIKLVNYNHIMPTRYTLDVNLKDVVSPDVLQSRDKKVTAAKETKKKLEER 120

Query: 465 FKTGKNRWFFSKLRF 509
           FKTGKNRWFFSKLRF
Sbjct: 121 FKTGKNRWFFSKLRF 135


>gb|AFW90619.1| ribosomal protein L27 [Solanum tuberosum]
          Length = 135

 Score =  239 bits (611), Expect = 3e-61
 Identities = 111/135 (82%), Positives = 127/135 (94%)
 Frame = +3

Query: 105 MVKFLKPNKAVIVLQGRYAGRKAVIIKSYDDGTRDRPYGHCLVAGISKYPKKVIRKDSAK 284
           MVKFLKPNKAV+VLQG+YAGRKAVI++++DDGTRDRPYGHCLVAG++KYPKKV+RKDSAK
Sbjct: 1   MVKFLKPNKAVVVLQGKYAGRKAVIVRAFDDGTRDRPYGHCLVAGVAKYPKKVVRKDSAK 60

Query: 285 KTAKKSRVKTFVKLVNYNHIMPTRYTLDVDLKDVASLETFGSRDKKVTAAKEVKARFEER 464
           K A KSRVKTF+KLVNYNHIMPTRYTLDVDLK+  +++   SRDKKVTAAKE KA+FEER
Sbjct: 61  KQANKSRVKTFIKLVNYNHIMPTRYTLDVDLKEAVTVDCLQSRDKKVTAAKEAKAKFEER 120

Query: 465 FKTGKNRWFFSKLRF 509
           FKTGKNRWFF+KLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135


>dbj|BAA96367.1| ribosomal protein L27 [Panax ginseng]
          Length = 135

 Score =  239 bits (610), Expect = 4e-61
 Identities = 117/135 (86%), Positives = 125/135 (92%)
 Frame = +3

Query: 105 MVKFLKPNKAVIVLQGRYAGRKAVIIKSYDDGTRDRPYGHCLVAGISKYPKKVIRKDSAK 284
           MVK LKPNKAVIVL GRYAGRK+VIIKS+D+GTRDRPYGHCLVAGISKYPKKVIRKDSAK
Sbjct: 1   MVKVLKPNKAVIVLNGRYAGRKSVIIKSFDEGTRDRPYGHCLVAGISKYPKKVIRKDSAK 60

Query: 285 KTAKKSRVKTFVKLVNYNHIMPTRYTLDVDLKDVASLETFGSRDKKVTAAKEVKARFEER 464
           KTAKKSRVK F+KLVN NHIMPTRYTLDVDLKDV +++   SRDKKVTAAKE KAR EER
Sbjct: 61  KTAKKSRVKAFIKLVNCNHIMPTRYTLDVDLKDVVTVDCLQSRDKKVTAAKETKARLEER 120

Query: 465 FKTGKNRWFFSKLRF 509
           FKTGKNRWFF+KLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135