BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003947
         (4930 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   451   e-158
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       447   e-156
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   445   e-152
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   434   e-137
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   397   e-136

>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  451 bits (1160), Expect(2) = e-158
 Identities = 279/931 (29%), Positives = 461/931 (49%), Gaps = 29/931 (3%)
 Frame = -1

Query: 3208 GNPITTLYSKLKNLKLILKGWSKKHFSRLSERTEEARXXXXXXXXXX*GDPTNSLLMINE 3029
            G+ + TL  K K LK  ++ ++++H+S L +R  +A              P++ L  + +
Sbjct: 274  GSAMFTLSKKSKFLKGTIRTFNREHYSGLEKRVVQAAQNLKTCQNNLLAAPSSYLAGLEK 333

Query: 3028 KASRLACRDLLEMEYEDIIQRSSCTWMVKGDRCTEFFHNILKEKKARNKIWTLTDEDGLK 2849
            +A R +  +L   E   + Q+S   W+  GD  T FFH ++  ++A N+I  L D+ G +
Sbjct: 334  EAHR-SWAELALAEERFLCQKSRVLWLKCGDSNTTFFHRMMTARRAINEIHYLLDQTGRR 392

Query: 2848 VTD-DHVKPKIVEHYTKLLGEDKTIRNESIIPQLHVSN--VVEPNLVCTLEEDIHEEEIR 2678
            + + D ++   V+ + +L G    + +   I Q++       + N    LE ++ E +I+
Sbjct: 393  IENTDELQTHCVDFFKELFGSSSHLISAEGISQINSLTRFKCDENTRQLLEAEVSEADIK 452

Query: 2677 RALFDMDNYKAPGPDSYNAFFYKTCWSIFGGDFIAALKFAFHSNTMPKGMNSTFICLNPK 2498
               F + + K+PGPD Y + F+K  WSI G   IAA++  F S  +    NST + + PK
Sbjct: 453  SEFFALPSNKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPK 512

Query: 2497 IPNP*KITDYRPIACCNISYKYFAKVISNRLKPIMPLVVSPNQSAFIAERTIQENLLLSH 2318
             PN  +IT++RPI+CCN  YK  +K+++ RL+ I+PL +SP+QSAF+  R + EN+LL+ 
Sbjct: 513  KPNADRITEFRPISCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRLLTENVLLAT 572

Query: 2317 ELLRSYNRKNISTRCSLKVDISKAYDSVC*KAIEEMLLRLRFPLKLIRWISLCYSTAHFS 2138
            EL++ + + NIS+R  LKVD+ KA+DSV    I E L     P + + WI  C ++  FS
Sbjct: 573  ELVQGFGQANISSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIKQCITSTSFS 632

Query: 2137 ILVNGTPEGFFKGKRGLRQGDPLSPYLFVLVMEILTCLPMTKFNEGLIKPHPKCKKTKVX 1958
            I V+G+  G+FKG +GLRQGDPLSP LFV+ MEIL+ L   KF++G I  HPK  + ++ 
Sbjct: 633  INVSGSLCGYFKGSKGLRQGDPLSPSLFVIAMEILSRLLENKFSDGSIGYHPKASEVRIS 692

Query: 1957 XXXXXXXXXXXXXXDIQSMSAVKHVLESFAAATGLKANSLKTTLLTGGMNEGESKHLADY 1778
                             S+  +K VLESF   +GL+ N+ K+ + T G+ + + +    +
Sbjct: 693  SLAFADDLMIFYDGKASSLRGIKSVLESFKNLSGLEMNTEKSAVYTAGLEDTDKEDTLAF 752

Query: 1777 MGVTLTELPVTYLGLQLTSTRLGIKDCYPLVEKITCRIQNWKNQCLSHAGRLELILSL-- 1604
             G      P  YLGL L   +L   D   L++KI  R  +W  + LS AGRL+LI S+  
Sbjct: 753  -GFVNGTFPFRYLGLPLLHRKLRRSDYSQLIDKIAARFNHWATKTLSFAGRLQLISSVIY 811

Query: 1603 --------------AVLDQVSKICNDFLWXXXXXXXXXXXXX*LKTALPKNEGGLNIMEL 1466
                            L  + ++CN FLW                + LPK EGGL +   
Sbjct: 812  STVNFWLSSFILPKCCLKTIEQMCNRFLWGNDITRRGDIKVSWQNSCLPKAEGGLGLRNF 871

Query: 1465 RIWNKASYCGLVYKIVTKGESLWTKWVWNQHIKGKKFWHMKVPQDCSWVWRNILQI*KVA 1286
              WNK     L++ +  + +SLW  W     ++   FW+ +     SW+W+ IL +  +A
Sbjct: 872  WTWNKTLNLRLIWMLFARRDSLWVAWNHANRLRHVNFWNAEAASHHSWIWKAILGLRPLA 931

Query: 1285 SKFIRYIIGSGRNIEVWYEPWCSDNILINDQVAKNQ--LHLPLEAKVSDLITDGVW---N 1121
             +F+R  +G+G+ +  WY+ W +   LI    A       +   A V++  +   W   +
Sbjct: 932  KRFLRGAVGNGQLLSYWYDHWSNLGPLIEAIGASGPQLTGIHESAVVTEASSSTGWILPS 991

Query: 1120 SNVHSLQEGELKRKILSTEI-CNHLQEDRVVRTLEPDG--MYSSKSAYNALRIPREKVMW 950
            +   +     L+  +L++        ED     +E      +SSK  +  LR      +W
Sbjct: 992  ARTRNASLANLRSTLLNSPAPSGDRGEDTYTWYIEGSSSTSFSSKLTWECLRQRDTTKLW 1051

Query: 949  YNMVWGKLVVPKHSFSSWQLMSGSLPTQDRLIKKNVLKESKCCFCHNARENSKHLFSECS 770
               VW K  +PK++F+ W      LP + R    +  + S CC C    E   HLF  C+
Sbjct: 1052 AAAVWYKGCIPKYAFNFWVAHLNRLPVRARTTHWSTNRPSLCCVCQRETETRDHLFIHCT 1111

Query: 769  FTNAVWKGIKNLLGLRIQGDSKREWRILMK--LCTRNDIKAEILKTFVCATVDHIWKERN 596
              + +W+ +    G   +    REW+ +++  L  +      + K  V   + HIWKERN
Sbjct: 1112 LGSLIWQQVLARFG---RSQMFREWKDIIEWMLSNQGSFSGTLKKLAVQTAIFHIWKERN 1168

Query: 595  VRRFRNINLSCTVVLSNLISEMKTYLQSQIS 503
             R    ++ S T +   +   ++  + ++I+
Sbjct: 1169 SRLHSAMSASHTAIFKQIDRSIRDSILARIT 1199



 Score =  139 bits (349), Expect(2) = e-158
 Identities = 92/272 (33%), Positives = 129/272 (47%), Gaps = 7/272 (2%)
 Frame = -3

Query: 4007 MIKLGVWSVRGINKPAKATEINKVRVENNLYMFSLLETKVKRENFNSISNLCCPFWSHLH 3828
            MI    W+VRG N   +     K    +     S+LET+VK            P W  + 
Sbjct: 1    MIDTFSWNVRGFNNSVRRRNFRKWFKLSKALFGSILETRVKEHRARRSLLSSFPGWKSVC 60

Query: 3827 NYDSNPSGRIWFFWDPSFVSVNLLKETSQMLHCEVLLMPTNKVFNLSLIYASNGRNERVQ 3648
            NY+    GRIW  WDP+ V V +L ++ Q + C V L   +  F ++ +YA N R  R +
Sbjct: 61   NYEFAALGRIWVVWDPA-VEVTVLSKSDQTISCTVKLPHISTEFVVTFVYAVNCRYGRRR 119

Query: 3647 LWNEIMNLKNNITL---PWCVCGDFNSVLYTNETLGMGPVHPRDIEDFSNCVNTSELVDL 3477
            LW+E+  L  N T    PW + GDFN  L   +    G    R +E+F  C+ TS + DL
Sbjct: 120  LWSELELLAANQTTSDKPWIILGDFNQSLDPVDASTGGSRITRGMEEFRECLLTSNISDL 179

Query: 3476 QFSRSFFTWTDNSDGDGRKCSKIDRCLVNLNWSTNFPASEAEFLPQGVSDHTPMILSWFN 3297
             F  + +TW +N + +     KIDR LVN +W    P S   F     SDH P   S  N
Sbjct: 180  PFRGNHYTWWNNQE-NNPIAKKIDRILVNDSWLIASPLSYGSFCAMEFSDHCP---SCVN 235

Query: 3296 ISHKA----YPFRFSNSWALHPGFHDIVREAW 3213
            IS+++     PF+ SN    HP F + +R  W
Sbjct: 236  ISNQSGGRNKPFKLSNFLMHHPEFIEKIRVTW 267


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  447 bits (1151), Expect(2) = e-156
 Identities = 291/927 (31%), Positives = 452/927 (48%), Gaps = 27/927 (2%)
 Frame = -1

Query: 3208 GNPITTLYSKLKNLKLILKGWSKKHFSRLSERTEEARXXXXXXXXXX*GDPTNSLLMINE 3029
            G+ +  +  KLK LK  +K +S+ ++S L +RT+EA             DPT        
Sbjct: 276  GSSMFRVSKKLKALKKPIKDFSRLNYSELEKRTKEAHDFLIGCQDRTLADPTPINASFEL 335

Query: 3028 KASRLACRDLLEMEYEDIIQRSSCTWMVKGDRCTEFFHNILKEKKARNKIWTLTDEDGLK 2849
            +A R     L   E     Q+S  +W  +GD  T++FH +   + + N I  L D +G  
Sbjct: 336  EAER-KWHILTAAEESFFRQKSRISWFAEGDGNTKYFHRMADARNSSNSISALYDGNGKL 394

Query: 2848 V-TDDHVKPKIVEHYTKLLGED-KTIRNESIIPQLHVSNVVEPNLVCTLEEDIHEEEIRR 2675
            V + + +      ++  LLG++      E     L +S    P  VC LE     E+IR 
Sbjct: 395  VDSQEGILDLCASYFGSLLGDEVDPYLMEQNDMNLLLSYRCSPAQVCELESTFSNEDIRA 454

Query: 2674 ALFDMDNYKAPGPDSYNAFFYKTCWSIFGGDFIAALKFAFHSNTMPKGMNSTFICLNPKI 2495
            ALF +   K+ GPD + A F+   WSI G +   A+K  F S  + K  N+T I L PKI
Sbjct: 455  ALFSLPRNKSCGPDGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKI 514

Query: 2494 PNP*KITDYRPIACCNISYKYFAKVISNRLKPIMPLVVSPNQSAFIAERTIQENLLLSHE 2315
             NP   +D+RPI+C N  YK  A+++++RL+ ++  V+S  QSAF+  R++ EN+LL+ +
Sbjct: 515  VNPTCTSDFRPISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATD 574

Query: 2314 LLRSYNRKNISTRCSLKVDISKAYDSVC*KAIEEMLLRLRFPLKLIRWISLCYSTAHFSI 2135
            L+  YN  NIS R  LKVD+ KA+DSV  + +   L  L  P K I WIS C ST  F++
Sbjct: 575  LVHGYNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCISTPTFTV 634

Query: 2134 LVNGTPEGFFKGKRGLRQGDPLSPYLFVLVMEILTCLPMTKFNEGLIKPHPKCKKTKVXX 1955
             +NG   GFFK  +GLRQGDPLSPYLFVL ME  + L  +++  GLI  HPK     +  
Sbjct: 635  SINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLIHYHPKASNLSISH 694

Query: 1954 XXXXXXXXXXXXXDIQSMSAVKHVLESFAAATGLKANSLKTTLLTGGMNEGESKHLADYM 1775
                            S+  +   L+ FA+ +GLK N  K+ L   G+N+ ES   A Y 
Sbjct: 695  LMFADDVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGLNQLESNANAAY- 753

Query: 1774 GVTLTELPVTYLGLQLTSTRLGIKDCYPLVEKITCRIQNWKNQCLSHAGRLELILSL--- 1604
            G  +  LP+ YLGL L + +L I +  PL+EKIT R ++W N+CLS AGR++LI S+   
Sbjct: 754  GFPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFG 813

Query: 1603 -------------AVLDQVSKICNDFLWXXXXXXXXXXXXX*LKTALPKNEGGLNIMELR 1463
                           + ++  +C+ FLW                  LPK+EGGL +  L 
Sbjct: 814  SINFWMSTFLLPKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRLL 873

Query: 1462 IWNKASYCGLVYKIVTKGESLWTKWVWNQHIKGKKFWHMKVPQDCSWVWRNILQI*KVAS 1283
             WNK     L++++    +SLW  W    H+    FW ++  Q  SW W+ +L +  +A 
Sbjct: 874  EWNKTLSMRLIWRLFVAKDSLWADWQHLHHLSRGSFWAVEGGQSDSWTWKRLLSLRPLAH 933

Query: 1282 KFIRYIIGSGRNIEVWYEPWCSDNIL--INDQVAKNQLHLPLEAKVSDLITDGVWNSNV- 1112
            +F+   +G+G   + WY+ W S   L  I   +  + L +PL AKV+   ++  W   V 
Sbjct: 934  QFLVCKVGNGLKADYWYDNWTSLGPLFRIIGDIGPSSLRVPLLAKVASAFSEDGWRLPVS 993

Query: 1111 HSLQEGELKRKILSTEICNHLQEDRVVRTLEPDGM----YSSKSAYNALRIPREKVMWYN 944
             S     +   + +  + +  QED        +G     +S+   + A+R       W +
Sbjct: 994  RSAPAKGIHDHLCTVPVPSTAQEDVDRYEWSVNGFLCQGFSAAKTWEAIRPKATVKSWAS 1053

Query: 943  MVWGKLVVPKHSFSSWQLMSGSLPTQDRLIKKNVLKESKCCFCHNARENSKHLFSECSFT 764
             +W K  VPK++F+ W      L T+ RL     ++   C  C  A E+  HL   C F+
Sbjct: 1054 SIWFKGAVPKYAFNMWVSHLNRLLTRQRLASWGHIQSDACVLCSFASESRDHLLLICEFS 1113

Query: 763  NAVWKGIKNLLGLRIQGDSKREWRILMKLCTRNDIKAEIL--KTFVCATVDHIWKERNVR 590
              VW+ +   +  R +  S   W  L+    ++  +A  L  K      V ++W++RN  
Sbjct: 1114 AQVWRLVFRRICPRQRLFS--SWSELLSWVRQSSPEAPPLLRKIVSQVVVYNLWRQRNNL 1171

Query: 589  RFRNINLSCTVVLSNLISEMKTYLQSQ 509
               ++ L+  V+   +  E++  + S+
Sbjct: 1172 LHNSLRLAPAVIFKLVDREIRNIISSR 1198



 Score =  134 bits (338), Expect(2) = e-156
 Identities = 91/267 (34%), Positives = 135/267 (50%), Gaps = 8/267 (2%)
 Frame = -3

Query: 3989 WSVRGINKPAKATEINKVRVENNLYMFSLLETKVKRENFNSISNLCCPFWSHLHNYDSNP 3810
            W++RG N  +  +   K    N      ++ET VK+       N   P WS + NY  + 
Sbjct: 8    WNIRGFNNVSHRSGFKKWVKANKPIFGGVIETHVKQPKDRKFINALLPGWSFVENYAFSD 67

Query: 3809 SGRIWFFWDPSFVSVNLLKETSQMLHCEVLLMPTNKVFNLSLIYASNGRNERVQLWNEIM 3630
             G+IW  WDPS V V ++ ++ QM+ CEVLL  +     +S++YA+N    R +LW EI+
Sbjct: 68   LGKIWVMWDPS-VQVVVVAKSLQMITCEVLLPGSPSWIIVSVVYAANEVASRKELWIEIV 126

Query: 3629 NLKNNITL---PWCVCGDFNSVLYTNETLGMGPVHPR---DIEDFSNCVNTSELVDLQFS 3468
            N+  +  +   PW V GDFN VL   E     PV      ++ DF +C+  +EL DL++ 
Sbjct: 127  NMVVSGIIGDRPWLVLGDFNQVLNPQE--HSNPVSLNVDINMRDFRDCLLAAELSDLRYK 184

Query: 3467 RSFFTWTDNSDGDGRKCSKIDRCLVNLNWSTNFPASEAEFLPQGVSDHTP--MILSWFNI 3294
             + FTW  N         KIDR LVN +W+  FP+S   F     SDH    ++L   +I
Sbjct: 185  GNTFTWW-NKSHTTPVAKKIDRILVNDSWNALFPSSLGIFGSLDFSDHVSCGVVLEETSI 243

Query: 3293 SHKAYPFRFSNSWALHPGFHDIVREAW 3213
              K  PF+F N    +  F ++VR+ W
Sbjct: 244  KAKR-PFKFFNYLLKNLDFLNLVRDNW 269


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  445 bits (1144), Expect(2) = e-152
 Identities = 277/903 (30%), Positives = 450/903 (49%), Gaps = 39/903 (4%)
 Frame = -1

Query: 3178 LKNLKLILKGWSKKHFSRLSERTEEARXXXXXXXXXX*GDPTNSLLMINEKASRLACRDL 2999
            LK LK  ++  ++     LS++  EA             +P+ S+ M  E A+      +
Sbjct: 291  LKGLKPKIRSMARDRLGNLSKKANEAYKILCAKQHVNLTNPS-SMAMEEENAAYSRWDRV 349

Query: 2998 LEMEYEDIIQRSSCTWMVKGDRCTEFFHNILKEKKARNKIWTLTDEDGL-KVTDDHVKPK 2822
              +E + + Q+S   W   GD+ T+ FH     ++A N I  +   DG+ K   D +K +
Sbjct: 350  AILEEKYLKQKSKLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAE 409

Query: 2821 IVEHYTKLLG------EDKTIRNESIIPQLHVSNVVEPNLVCTLEEDIHEEEIRRALFDM 2660
                + + L       E  TI     +  +  S+  + +L+      +  EEIR+ LF M
Sbjct: 410  AERFFREFLQLIPNDFEGVTITELQQLLPVRCSDADQQSLI----RPVTAEEIRKVLFRM 465

Query: 2659 DNYKAPGPDSYNAFFYKTCWSIFGGDFIAALKFAFHSNTMPKGMNSTFICLNPKIPNP*K 2480
             + K+PGPD Y + F+K  W I G +F  A++  F    +PKG+NST + L PK     +
Sbjct: 466  PSDKSPGPDGYTSEFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEARE 525

Query: 2479 ITDYRPIACCNISYKYFAKVISNRLKPIMPLVVSPNQSAFIAERTIQENLLLSHELLRSY 2300
            + DYRPI+CCN+ YK  +K+I+NRLK ++P  ++ NQSAF+ +R + ENLLL+ EL++ Y
Sbjct: 526  MKDYRPISCCNVLYKVISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDY 585

Query: 2299 NRKNISTRCSLKVDISKAYDSVC*KAIEEMLLRLRFPLKLIRWISLCYSTAHFSILVNGT 2120
            ++  ISTRC++K+DISKA+DSV    +  +   L FP + I WI++C +TA FS+ VNG 
Sbjct: 586  HKDTISTRCAIKIDISKAFDSVQWPFLINVFTILGFPREFIHWINICITTASFSVQVNGE 645

Query: 2119 PEGFFKGKRGLRQGDPLSPYLFVLVMEILTCLPMTKFNEGLIKPHPKCKKTKVXXXXXXX 1940
              G+F+  RGLRQG  LSPYLFV+ M++L+ +            HPKCK   +       
Sbjct: 646  LAGYFQSSRGLRQGCALSPYLFVICMDVLSKMLDKAAAARHFGYHPKCKTMGLTHLSFAD 705

Query: 1939 XXXXXXXXDIQSMSAVKHVLESFAAATGLKANSLKTTLLTGGMNEGESKHLADYMGVTLT 1760
                     I+S+  +  V + FA  +GL+ +  K+T+   G++      +AD    +  
Sbjct: 706  DLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSG 765

Query: 1759 ELPVTYLGLQLTSTRLGIKDCYPLVEKITCRIQNWKNQCLSHAGRLELILSL-------- 1604
            +LPV YLGL L + RL   DC PL+E++  RI +W ++ LS+AGRL LI S+        
Sbjct: 766  QLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFW 825

Query: 1603 --------AVLDQVSKICNDFLWXXXXXXXXXXXXX*LKTALPKNEGGLNIMELRIWNKA 1448
                      + ++ K+C+ FLW                   PK+EGGL +  L+  N  
Sbjct: 826  LAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDV 885

Query: 1447 SYCGLVYKIVTKGESLWTKWVWNQHIKGKKFWHMK-VPQDCSWVWRNILQI*KVASKFIR 1271
                LV+KIV+   SLW KWV    ++   FW +K      SW+W+ +L+  +VA    +
Sbjct: 886  CCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSK 945

Query: 1270 YIIGSGRNIEVWYEPWCSDNILINDQVAKNQLHLPLEAKVSDLITDGVW--------NSN 1115
              +G+G+    WY+ W     L+     +  + L +  +++    +  W         ++
Sbjct: 946  VEVGNGKQTSFWYDNWSDLGQLLERTGDRGLIDLGISRRMT---VEEAWTNRRQRRHRND 1002

Query: 1114 VHSLQEGELKRK-ILSTEICNHLQEDRVVRTLEPD---GMYSSKSAYNALRIPREKVMWY 947
            V+++ E  LK+     TE      ED+V+   + D     +S++  ++  R    +V W+
Sbjct: 1003 VYNVIEDALKKSWDTRTE-----TEDKVLWRGKSDVFRTTFSTRDTWHHTRSTSARVPWH 1057

Query: 946  NMVWGKLVVPKHSFSSWQLMSGSLPTQDRLIKKNVLKESKCCFCHNARENSKHLFSECSF 767
             ++W     PK+SF SW    G LPT DR+I       + C FC    E   HLF  CSF
Sbjct: 1058 KVIWFSHATPKYSFCSWLAAHGRLPTGDRMINWANGIATDCIFCQGTLETRDHLFFTCSF 1117

Query: 766  TNAVWKGIKNLLGLRIQGDSKREWRILMKLCTRND---IKAEILKTFVCATVDHIWKERN 596
            T+ +W  +   +    +      W+ +++  T +    ++  + +    AT+  +W+ERN
Sbjct: 1118 TSVIWVDLARGI---FKTQYTSHWQSIIEAITNSQHHRVEWFLRRYVFQATIYIVWRERN 1174

Query: 595  VRR 587
             RR
Sbjct: 1175 GRR 1177



 Score =  124 bits (311), Expect(2) = e-152
 Identities = 88/269 (32%), Positives = 123/269 (45%), Gaps = 10/269 (3%)
 Frame = -3

Query: 3989 WSVRGINKPAKATEINKVRVENNLYMFSLLETKVKRENFNSISNLCCPFWSHLHNYDSNP 3810
            W+VRG+NK +K + I K   ENN     L+ET+VK    + +       WS L NY+ N 
Sbjct: 6    WNVRGLNKSSKHSVIKKWIEENNFQFGCLVETRVKESKVSQLVGKLFKDWSILTNYEHNR 65

Query: 3809 SGRIWFFWDPSFVSVNLLKETSQMLHCEVLLMPTNKVFNLSLIYASNGRNERVQLWNEIM 3630
             GRIW  W  + V ++ + ++ Q+L C V L      F  S +YASN   ER  LW+E+ 
Sbjct: 66   RGRIWVLWRKN-VRLSPIYKSCQLLTCSVKLEDRQDEFFCSFVYASNYVEERKVLWSELK 124

Query: 3629 NLKNNITL---PWCVCGDFNSVLYTNETLGMGPVHPR---DIEDFSNCVNTSELVDLQFS 3468
            +  ++  +   PW + GDFN  L   E      VHP     + DF   +N   L D+   
Sbjct: 125  DHYDSPIIRHKPWTLLGDFNETLDIAEH-SQSFVHPMVTPGMRDFQQVINYCSLTDMAAQ 183

Query: 3467 RSFFTWTDNSDGDGRKCSKIDRCLVNLNWSTNFPASEAEFLPQGVSDHTPMILSW----F 3300
               FTW  N    G    K+DR L+N  W+  F  S + F   G SDH    +S      
Sbjct: 184  GPLFTWC-NKREHGLIMKKLDRVLINDCWNQTFSQSYSVFEAGGCSDHLRCRISLNSEAG 242

Query: 3299 NISHKAYPFRFSNSWALHPGFHDIVREAW 3213
            N      PF+F N+      F  +V   W
Sbjct: 243  NKVQGLKPFKFVNALTDMEDFKPMVSTYW 271


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  434 bits (1117), Expect(2) = e-137
 Identities = 274/846 (32%), Positives = 419/846 (49%), Gaps = 30/846 (3%)
 Frame = -1

Query: 3208 GNPITTLYSKLKNLKLILKGWSKKHFSRLSERTEEARXXXXXXXXXX*GDPTNSLLMINE 3029
            G+ +  +  KLK LK +++ +S+ ++S + +RT+EA              P  S   I  
Sbjct: 173  GSAMYRVSVKLKALKKVIRDFSRDNYSDIEKRTKEAHDALLLAQSVLLASPCPSNAAIEA 232

Query: 3028 KASRLACRDLLEMEYEDIIQRSSCTWMVKGDRCTEFFHNILKEKKARNKIWTLTDEDGLK 2849
            +  R   R L E E     QRS   W+ +GD  + +FH +   +++ N I  L+D  G +
Sbjct: 233  ETQR-KWRILAEAEASFFYQRSRVNWLREGDMNSSYFHKMASARQSLNHIHFLSDPVGDR 291

Query: 2848 VT-DDHVKPKIVEHYTKLLGEDKTIRNESIIPQLHVSNVVE----PNLVCTLEEDIHEEE 2684
            +    +++   VE++   LG ++ +    +  Q  +SN++     P    +L+     E+
Sbjct: 292  IEGQQNLENHCVEYFQSNLGSEQGL---PLFEQADISNLLSYRCSPAQQVSLDTPFSSEQ 348

Query: 2683 IRRALFDMDNYKAPGPDSYNAFFYKTCWSIFGGDFIAALKFAFHSNTMPKGMNSTFICLN 2504
            I+ A F +   KA GPD ++  F+  CW I GG+   A+   F S  + K  N+T + L 
Sbjct: 349  IKNAFFSLPRNKASGPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGKLLKQWNATNLVLI 408

Query: 2503 PKIPNP*KITDYRPIACCNISYKYFAKVISNRLKPIMPLVVSPNQSAFIAERTIQENLLL 2324
            PKI N   ++D+RPI+C N  YK  +K++++RLK  +P  +S +QSAF+  R   EN+LL
Sbjct: 409  PKITNASSMSDFRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPGRLFLENVLL 468

Query: 2323 SHELLRSYNRKNISTRCSLKVDISKAYDSVC*KAIEEMLLRLRFPLKLIRWISLCYSTAH 2144
            + EL+  YN+KNI+    LKVD+ KA+DSV    I   L  L  P K   WI  C STA 
Sbjct: 469  ATELVHGYNKKNIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTAS 528

Query: 2143 FSILVNGTPEGFFKGKRGLRQGDPLSPYLFVLVMEILTCLPMTKFNEGLIKPHPKCKKTK 1964
            FS+++NG   G F   +GLRQGDP+SPYLFVL ME+ + L  +++  G I  HPK  + +
Sbjct: 529  FSVILNGHSAGHFWSSKGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKTSQLE 588

Query: 1963 VXXXXXXXXXXXXXXXDIQSMSAVKHVLESFAAATGLKANSLKTTLLTGGMNEGESKHLA 1784
            +                  S+  +   LE FA  +GL  N+ KT L   G+++ ES  +A
Sbjct: 589  ISHLMFADDVMIFFDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGLSQSESDSMA 648

Query: 1783 DYMGVTLTELPVTYLGLQLTSTRLGIKDCYPLVEKITCRIQNWKNQCLSHAGRLEL---- 1616
             Y G  L  LPV YLGL L S +L I +  PL+EKIT R  +W  + LS AGR++L    
Sbjct: 649  SY-GFKLGSLPVRYLGLPLMSRKLTIAEYAPLIEKITARFNSWVVRLLSFAGRVQLLASV 707

Query: 1615 ------------ILSLAVLDQVSKICNDFLWXXXXXXXXXXXXX*LKTALPKNEGGLNIM 1472
                        IL L  + ++  +C+ FLW               +  LPK EGG+ + 
Sbjct: 708  ISGIVNFWISSFILPLGCIKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIGLR 767

Query: 1471 ELRIWNKASYCGLVYKIVTKGESLWTKWVWNQHIKGK--KFWHMKVPQDCSWVWRNILQI 1298
               + N+  Y  +++ + +   SLW  W   QH  GK   FW+       SW W+ +L++
Sbjct: 768  RFAVSNRTLYLRMIWLLFSNSGSLWVAW-HKQHSLGKSTSFWNQPEKPHDSWNWKCLLRL 826

Query: 1297 *KVASKFIRYIIGSGRNIEVWYEPWCSDNILIN--DQVAKNQLHLPLEAKVSDLITDGVW 1124
              VA +FIR  +G+GR+   W++ W     LI          L + L AK+SD+ T   W
Sbjct: 827  RVVAERFIRCNVGNGRDASFWFDNWTPFGPLIKFLGNEGPRDLRVHLNAKISDVCTSEGW 886

Query: 1123 N-SNVHSLQEGELKRKILSTEICNHLQE----DRVVRTLEPDGMYSSKSAYNALRIPREK 959
            + ++  S Q   L   + +  + +  Q+    D VV      G +S+ + ++ALR     
Sbjct: 887  SIADPRSDQALSLHTHLTNISMPSDAQDLDSYDWVVDNKVCQG-FSAAATWSALRPSSAP 945

Query: 958  VMWYNMVWGKLVVPKHSFSSWQLMSGSLPTQDRLIKKNVLKESKCCFCHNARENSKHLFS 779
            V W   VW K   PKH+F  W      LPT+ RL    +  ++ C  C    E   HLF 
Sbjct: 946  VPWARAVWFKGATPKHAFHLWTAHLDRLPTKVRLASWGMQIDTTCGLCSLHPETRDHLFL 1005

Query: 778  ECSFTN 761
             C F N
Sbjct: 1006 SCDFAN 1011



 Score = 85.5 bits (210), Expect(2) = e-137
 Identities = 58/165 (35%), Positives = 79/165 (47%), Gaps = 5/165 (3%)
 Frame = -3

Query: 3692 LSLIYASNGRNERVQLWNEIMNLKNN---ITLPWCVCGDFNSVLYTNE-TLGMGPVHPRD 3525
            LS +YAS     R  LWNEI++  N+   I  PW V GDFN +L+ +E +   G    R 
Sbjct: 3    LSFVYASTDEVTRQILWNEIVDFSNDPCVIDKPWTVLGDFNQILHPSEHSTSDGFNVDRP 62

Query: 3524 IEDFSNCVNTSELVDLQFSRSFFTWTDNSDGDGRKCSKIDRCLVNLNWSTNFPASEAEFL 3345
               F   +  + L DL F  + FTW  N         K+DR LVN  W+T FP+S   F 
Sbjct: 63   TRIFRETILLASLTDLSFRGNTFTWW-NKRSRAPVAKKLDRILVNDKWTTTFPSSLGLFG 121

Query: 3344 PQGVSDHTPMILSWFNISHKA-YPFRFSNSWALHPGFHDIVREAW 3213
                SDH+   LS  + S ++  PFRF+N       F  ++   W
Sbjct: 122  EPDFSDHSSCELSLMSASPRSKKPFRFNNFLLKDENFLSLICLKW 166


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  397 bits (1021), Expect(2) = e-136
 Identities = 270/896 (30%), Positives = 405/896 (45%), Gaps = 31/896 (3%)
 Frame = -1

Query: 3181 KLKNLKLILKGWSKKHFSRLSERTEEARXXXXXXXXXX*GDPTNSLLMINEKASRLACRD 3002
            KLK LK ILK   +     LS R  EA                                 
Sbjct: 524  KLKGLKPILKSLGRSTLHNLSVRVAEAYTS------------------------------ 553

Query: 3001 LLEMEYEDIIQRSSCTWMVKGDRCTEFFHNILKEKKARNKIWTLTDEDGLKVTDDHVKPK 2822
             L +E   + Q+S   W+  GD+  ++FHN +K + A N I  +   DG           
Sbjct: 554  -LYLEEGYLQQKSKLHWLDVGDKNNKYFHNSVKARVAMNSIREIQCTDGR---------- 602

Query: 2821 IVEHYTKLLGEDKTIRNESIIPQLHVSNVVEPNLVCTLEEDIHEEEIRRALFDMDNYKAP 2642
                                              VCT  +DI EE           +K+P
Sbjct: 603  ----------------------------------VCTSHDDIKEEA----------HKSP 618

Query: 2641 GPDSYNAFFYKTCWSIFGGDFIAALKFAFHSNTMPKGMNSTFICLNPKIPNP*KITDYRP 2462
            GPD Y   F+KT W + G D + A++  F    +PKG+N+T + L  K      + DYRP
Sbjct: 619  GPDGYTVEFFKTAWPVLGRDLVIAIQSFFLKGFLPKGINTTILALISKKHEVSGMKDYRP 678

Query: 2461 IACCNISYKYFAKVISNRLKPIMPLVVSPNQSAFIAERTIQENLLLSHELLRSYNRKNIS 2282
            I+CCN+ YK  +K+++NRLK I+P  ++PNQSAFI +R + ENLLL+ EL++ Y++++IS
Sbjct: 679  ISCCNVLYKIVSKLMANRLKEILPASIAPNQSAFIKDRLMMENLLLASELVKDYHKESIS 738

Query: 2281 TRCSLKVDISKAYDSVC*KAIEEMLLRLRFPLKLIRWISLCYSTAHFSILVNGTPEGFFK 2102
            +R +LK+DISKA+D V    +  +L  +  P   I WI LC  TA FS+ VNG   GFF+
Sbjct: 739  SRSALKIDISKAFDFVQWPFLINVLKAIHLPEMFIHWIELCIGTASFSVQVNGELSGFFR 798

Query: 2101 GKRGLRQGDPLSPYLFVLVMEILTCLPMTKFNEGLIKPHPKCKKTKVXXXXXXXXXXXXX 1922
             +RGLRQG  LSPYL+V+ M +L+C+      E  I  HP+C+   +             
Sbjct: 799  SERGLRQGCSLSPYLYVICMNVLSCMLDKAAVEKKISYHPRCRNMNLTHLCFADDIMVFS 858

Query: 1921 XXDIQSMSAVKHVLESFAAATGLKANSLKTTLLTGGMNEGESKHLADYMGVTLTELPVTY 1742
                +S+     + E FAA + LK +  K+T+   G++      +       L  LPV Y
Sbjct: 859  DGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGISPNAKTSILQQFPFELGTLPVKY 918

Query: 1741 LGLQLTSTRLGIKDCYPLVEKITCRIQNWKNQCLSHAGRLELILSL-------------- 1604
            LGL L + R+   D  PLVEKI  RI +W N+ LS AGRL+LI S+              
Sbjct: 919  LGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRL 978

Query: 1603 --AVLDQVSKICNDFLWXXXXXXXXXXXXX*LKTALPKNEGGLNIMELRIWNKASYCGLV 1430
              A L ++ K+ + FLW               +    K EGGL +  L+  N+ S   L+
Sbjct: 979  PKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANEVSLLKLI 1038

Query: 1429 YKIVTKGESLWTKWVWNQHIKGKKFWHMKVPQDC-SWVWRNILQI*KVASKFIRYIIGSG 1253
            ++I++  +SLW KWV    I+ + FW +K      SW+WR IL+    A  F R  + SG
Sbjct: 1039 WRILSARDSLWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLFHRMEVRSG 1098

Query: 1252 RNIEVWYEPWCSDNILINDQVAKN--QLHLPLEAKVSDLITDGVWNSNVHSLQE------ 1097
                 W++ WC    L     ++    L +P  A V++++       N H  +       
Sbjct: 1099 TFTSFWHDHWCPLGRLHQHMGSRGTIDLGIPNNATVAEVM-------NTHRRKRHRADFL 1151

Query: 1096 GELKRKILSTEICNHLQEDRVVRTLEPD---GMYSSKSAYNALRIPREKVMWYNMVWGKL 926
             ++K +I           DR +   + D     +SS   +  +R    +  WY  VW   
Sbjct: 1152 NQIKSQIELARQDRSTDGDRSLWKQKEDTFKSSFSSSKTWQQIRSISLRCDWYRGVWFSA 1211

Query: 925  VVPKHSFSSWQLMSGSLPTQDRLIKKNVLKESKCCFCHNARENSKHLFSECSFTNAVWKG 746
              PK+SF +W      L T D++ K N      C FC    E   HLF  C +++ VW  
Sbjct: 1212 STPKYSFVTWLAFHNRLTTSDKICKWNSGARYDCVFCGEELETRDHLFFSCPYSSHVWFS 1271

Query: 745  IKNLLGLRIQGDSKREWRIL---MKLCTRNDIKAEILKTFVCATVDHIWKERNVRR 587
            +   L   + G +   W ++   +   +R  +    L+    A++  +W+ERN RR
Sbjct: 1272 LTKGL---LNGRNILNWNLITPHLLDSSRPYLHVFTLRYAFQASIHSLWRERNCRR 1324



 Score =  118 bits (296), Expect(2) = e-136
 Identities = 83/264 (31%), Positives = 127/264 (48%), Gaps = 10/264 (3%)
 Frame = -3

Query: 3974 INKPAKATEINKVRVENNLYMFSLLETKVKRENFNSISNLCCPFWSHLHNYDSNPSGRIW 3795
            +N P  +   +K    ++L    L+ET+V     + I +     WS + NY+ +  GRIW
Sbjct: 252  VNLPRSSKSSHK----DSLTFGGLIETRVDENRASRIISKVFRDWSSMTNYEHHRLGRIW 307

Query: 3794 FFWDPSFVSVNLLKETSQMLHCEVLLMPTNKVFNLSLIYASNGRNERVQLWNEIMNLKNN 3615
              W  + V V  + ++ Q++ C VL     + F +S IYASN  +ER +LW +   L+N+
Sbjct: 308  VVWKNT-VRVTPVYKSGQLITCSVLTEENAEDFFVSFIYASNYVDERRELWED---LRNH 363

Query: 3614 ITLP------WCVCGDFNSVL--YTNETLGMGPVHPRDIEDFSNCVNTSELVDLQFSRSF 3459
              LP      W + GDFN +L    +      P  P+ + DF + V    L D+ +    
Sbjct: 364  YDLPMFRNKGWMILGDFNEILDGEDHSNFVNSPFIPQGMRDFQDVVRYCSLADMSYHGPV 423

Query: 3458 FTWTDNSDGDGRKCSKIDRCLVNLNWSTNFPASEAEFLPQGVSDHTPMILSWF--NISHK 3285
            FTW  N   +G    K+DR LVN  W+  FPA  + F   G+SDH    + +   N   K
Sbjct: 424  FTWC-NKREEGLVNKKLDRVLVNEVWTRKFPAVYSIFEAGGISDHLRCRIKFASGNTQPK 482

Query: 3284 AYPFRFSNSWALHPGFHDIVREAW 3213
              PF+F+N     P F  IV++ W
Sbjct: 483  G-PFKFNNVLTTLPEFLQIVKDFW 505