BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003936
         (1293 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD ...   392   e-106
ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [...   386   e-105
ref|XP_004149458.1| PREDICTED: RNA polymerase sigma factor sigE,...   373   e-101
ref|XP_002331841.1| predicted protein [Populus trichocarpa] gi|2...   370   e-100
ref|XP_004166500.1| PREDICTED: RNA polymerase sigma factor sigE,...   370   e-100

>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
            gi|302143685|emb|CBI22546.3| unnamed protein product
            [Vitis vinifera]
          Length = 518

 Score =  392 bits (1007), Expect = e-106
 Identities = 217/359 (60%), Positives = 261/359 (72%), Gaps = 8/359 (2%)
 Frame = +1

Query: 241  PLGLSSRFSINRSPFKSPVFLAFKTDKTDNRSLVTSRETTPL---STKSHRVQKRLXXXX 411
            P GL+++FS +++P + P+ LAFK DK  N +LVT  E  PL   ++K H+  KRL    
Sbjct: 16   PFGLNAKFSNHQTPLRRPLVLAFKADKAKNIALVTPHEPIPLPIETSKDHK--KRLRRAS 73

Query: 412  XXXXXXXXXXXDE--PCALDVDYSEAAEKLENIYKLSPAKVISXXXXXXXXXXXXXXXXX 585
                       DE  PC++++DY+EAA KLENIYKLSPA  +S                 
Sbjct: 74   KPSKRVKAVSTDEVSPCSVELDYNEAAAKLENIYKLSPATDVSEAEDLERVVRRGRQRRK 133

Query: 586  XXX-GNEKPDKELSDIVVKNNKKTAKRLGLDKRIELRR--KEEVVDLTKRKVNDTADVGY 756
                 ++K +KE+SD VV+ + K  KRL L+KRI L +  +E+ V   ++K +   +   
Sbjct: 134  RVTLADDKAEKEVSDNVVRIHNKKPKRLSLEKRIALSKMKQEKAVASIQKKRDSKNEDEN 193

Query: 757  ADRLVREYSASTDLVSLDWRKMKIPPVLPSSEHTLLFKLMQPMKTLLKVKEDLHKDLGRE 936
             D LVREYSASTDLVSLDW+KMKIPPVLP SEH  LFKLMQPMK LL+VK++L KDLGRE
Sbjct: 194  IDVLVREYSASTDLVSLDWKKMKIPPVLPPSEHAWLFKLMQPMKGLLEVKDNLQKDLGRE 253

Query: 937  PSDGELAAATNMSAPKVRKQIEVGRAARNKLIKHNLRLVLFVINKYFQEFTSGPRFQDLC 1116
            P+DGELA A +MSA +VR+ +EVG+AARNKLIKHNLRLVLFVINKYFQEF +GP+FQDLC
Sbjct: 254  PTDGELAEAMSMSAVQVRRHMEVGQAARNKLIKHNLRLVLFVINKYFQEFANGPKFQDLC 313

Query: 1117 QAGAKGLITAIDRFEPKRRFRLSTYGLFWIRHAIMRSMTTSSFTRVSFGLESVRVEIQR 1293
            QAG KGLITAIDRFEPKR FRLSTYGLFWIRHAIMRSMT SSFTRVSFGLESVRVEIQR
Sbjct: 314  QAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIMRSMTLSSFTRVSFGLESVRVEIQR 372


>ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223547495|gb|EEF48990.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 501

 Score =  386 bits (991), Expect = e-105
 Identities = 211/353 (59%), Positives = 249/353 (70%), Gaps = 2/353 (0%)
 Frame = +1

Query: 241  PLGLSSRFSINRSPFKSPVFLAFKTDKTDNRSLVTSRETTPLSTKSHRVQKRLXXXXXXX 420
            PLGLS +FS  RS  K  + +AFK DK ++  LV  RE TPL  ++ + +KR        
Sbjct: 14   PLGLSLKFSTYRSTVKRSLVVAFKEDKANDIILVPPRERTPLPIETSKGKKRRGKTNREV 73

Query: 421  XXXXXXXXDEPCALDVDYSEAAEKLENIYKLSPAKVISXXXXXXXXXXXXXXXXXXXXGN 600
                         L+VDY+EAA KLENIYKLSPA   S                    G+
Sbjct: 74   SSG---------TLEVDYNEAAAKLENIYKLSPATDTSDVDINGLIRKGRQRKRKTGEGD 124

Query: 601  EKPDKELSDIVVKNNKKTAKRLGLDKRIELRR--KEEVVDLTKRKVNDTADVGYADRLVR 774
            EK +   S  +V+N  K  KRL LDKRI L++  +EEVV   ++K +   D    + LVR
Sbjct: 125  EKAENRTSRTIVRNRAKKTKRLSLDKRIALKKNEEEEVVGPIRKKKDSKDDNEKIEELVR 184

Query: 775  EYSASTDLVSLDWRKMKIPPVLPSSEHTLLFKLMQPMKTLLKVKEDLHKDLGREPSDGEL 954
             YSAST+LVSLDWRKMKIPPVLPS+EH  LFKLMQPMKTLL VK DL K+LGR+P+DGEL
Sbjct: 185  TYSASTNLVSLDWRKMKIPPVLPSTEHAWLFKLMQPMKTLLPVKADLQKNLGRDPTDGEL 244

Query: 955  AAATNMSAPKVRKQIEVGRAARNKLIKHNLRLVLFVINKYFQEFTSGPRFQDLCQAGAKG 1134
            A ATNM+  KVRKQ+EVGRAARNKLIKHNLRLV+FV+NKYFQ+F +GPRFQDLCQAG KG
Sbjct: 245  AEATNMNVEKVRKQLEVGRAARNKLIKHNLRLVMFVMNKYFQDFANGPRFQDLCQAGVKG 304

Query: 1135 LITAIDRFEPKRRFRLSTYGLFWIRHAIMRSMTTSSFTRVSFGLESVRVEIQR 1293
            LITAIDRFEP+RRF+LSTY LFWIRHAI+RSMT SSFT+VSFGLESVR EIQ+
Sbjct: 305  LITAIDRFEPQRRFQLSTYSLFWIRHAIIRSMTLSSFTKVSFGLESVRTEIQK 357


>ref|XP_004149458.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Cucumis sativus]
          Length = 514

 Score =  373 bits (958), Expect = e-101
 Identities = 212/361 (58%), Positives = 250/361 (69%), Gaps = 10/361 (2%)
 Frame = +1

Query: 241  PLGLSSRFSINRSPFKSPVFLAFKTDKTDNRSLVTSRETTPLSTKSH-RVQKRLXXXXXX 417
            P  L  +FS + S  K P  +AFK DK  N +LV+  E   L  +S+ R +KR       
Sbjct: 14   PFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNNRRKKRSGNTSKP 73

Query: 418  XXXXXXXXXDE--PCALDVDYSEAAEKLENIYKLSPAKVISXXXXXXXXXXXXXXXXXXX 591
                     DE  PC+LD+DY+EAA KLENI+KLSP    S                   
Sbjct: 74   LKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKDGRSKRGQKR---- 129

Query: 592  XGNEKPDKELSDIVVKNNKKTAKRLGLDKRIELRRKEE---VVDLTKRKVN----DTADV 750
              ++K      D +V+N  K  KRL LDKRI L+ K+E   V  L K+K      D  D 
Sbjct: 130  --SKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKNEADEIDD 187

Query: 751  GYADRLVREYSASTDLVSLDWRKMKIPPVLPSSEHTLLFKLMQPMKTLLKVKEDLHKDLG 930
               DRLVR+YSASTDLVSLDW+KMKIPPVLPSSEHT LFKL+QPMK L++V+E+L K LG
Sbjct: 188  DEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLG 247

Query: 931  REPSDGELAAATNMSAPKVRKQIEVGRAARNKLIKHNLRLVLFVINKYFQEFTSGPRFQD 1110
            REP++GELA ATNM+  +VR+Q+EVGRAARNKLIKHNLRLVLFVINKYF++F SGP+FQD
Sbjct: 248  REPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQD 307

Query: 1111 LCQAGAKGLITAIDRFEPKRRFRLSTYGLFWIRHAIMRSMTTSSFTRVSFGLESVRVEIQ 1290
            LCQAG KGLITAIDRFEPKR+FRLSTY LFWIRHAI+RSMT SSFTRVSFGL+SVRVEIQ
Sbjct: 308  LCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQ 367

Query: 1291 R 1293
            R
Sbjct: 368  R 368


>ref|XP_002331841.1| predicted protein [Populus trichocarpa] gi|222875079|gb|EEF12210.1|
            predicted protein [Populus trichocarpa]
          Length = 512

 Score =  370 bits (951), Expect = e-100
 Identities = 208/358 (58%), Positives = 245/358 (68%), Gaps = 7/358 (1%)
 Frame = +1

Query: 241  PLGLSSRFSINRSPFKSPVFLAFKTDKTDNRSLVTSRETTPLSTKSHRVQKRLXXXXXXX 420
            PLG S++FS  RS  K P+ +AFK DK++  +LV   E  PL  ++ + +KR        
Sbjct: 14   PLGFSTKFSTCRSTAKRPLIVAFKADKSNETALVAPHEQIPLPIETTKEKKRRGKSKKSS 73

Query: 421  XXXXXXXXD-EPCALDVDYSEAAEKLENIYKLSPAKVISXXXXXXXXXXXXXXXXXXXXG 597
                    +  PC L VDY+EAA KLENIYKLSP    S                     
Sbjct: 74   DRLKAVRTEVSPCTLGVDYNEAAAKLENIYKLSPGTDTSDVEDVNGVIRRCRQRKRKTSE 133

Query: 598  NEKPDK-ELSDIVVKNNKKTAKRLGLDKRIELRRKEE---VVDLTKRK--VNDTADVGYA 759
             EK D    S I+V+N  K AKRL L KRI LR K +   V  + KRK   N+   +   
Sbjct: 134  CEKEDDGRTSKIIVRNQAKKAKRLSLQKRIALRIKSDEKLVTSVGKRKGRKNENEKI--- 190

Query: 760  DRLVREYSASTDLVSLDWRKMKIPPVLPSSEHTLLFKLMQPMKTLLKVKEDLHKDLGREP 939
            D LVREYS+STDL SLDW+KMKIPPVL S+EH  LFKLMQPMK  L+VKE L ++ GREP
Sbjct: 191  DELVREYSSSTDLASLDWKKMKIPPVLTSAEHAWLFKLMQPMKASLQVKEHLQENSGREP 250

Query: 940  SDGELAAATNMSAPKVRKQIEVGRAARNKLIKHNLRLVLFVINKYFQEFTSGPRFQDLCQ 1119
            ++GELA AT+M   +VRKQIEVGRAARNKLIKHNLRLVLFVINKYFQ++ +GPR+QDLCQ
Sbjct: 251  TEGELAEATDMDVLQVRKQIEVGRAARNKLIKHNLRLVLFVINKYFQDYANGPRYQDLCQ 310

Query: 1120 AGAKGLITAIDRFEPKRRFRLSTYGLFWIRHAIMRSMTTSSFTRVSFGLESVRVEIQR 1293
            AG KGL+TAIDRFEPKRRFRLSTYGLFWIRHAI+RSMT SSFTRVSFGLES+R EIQ+
Sbjct: 311  AGVKGLMTAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFGLESIRSEIQK 368


>ref|XP_004166500.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Cucumis sativus]
          Length = 515

 Score =  370 bits (950), Expect = e-100
 Identities = 210/363 (57%), Positives = 248/363 (68%), Gaps = 12/363 (3%)
 Frame = +1

Query: 241  PLGLSSRFSINRSPFKSPVFLAFKTDKTDNRSLVTSRETTPLSTKSH-RVQKRLXXXXXX 417
            P  L  +FS + S  K P  +AFK DK  N +LV+  E   L  +S+ R +KR       
Sbjct: 14   PFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNNRRKKRSGNTSKP 73

Query: 418  XXXXXXXXXDE--PCALDVDYSEAAEKLENIYKLSPAKVISXXXXXXXXXXXXXXXXXXX 591
                     DE  PC+LD+DY+EAA KLENI+KLSP    S                   
Sbjct: 74   LKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKDGRSKRGQKR---- 129

Query: 592  XGNEKPDKELSDIVVKNNKKTAKRLGLDKRIELRRKEE---------VVDLTKRKVNDTA 744
              ++K      D +V+N  K  KRL LDKRI L+ K +         V  L K+K     
Sbjct: 130  --SKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKRKAKRNKEGKAVPSLRKQKETKNE 187

Query: 745  DVGYADRLVREYSASTDLVSLDWRKMKIPPVLPSSEHTLLFKLMQPMKTLLKVKEDLHKD 924
            D    DRLVR+YSASTDLVSLDW+KMKIPPVLPSSEHT LFKL+QPMK L++V+E+L K 
Sbjct: 188  D-DEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKG 246

Query: 925  LGREPSDGELAAATNMSAPKVRKQIEVGRAARNKLIKHNLRLVLFVINKYFQEFTSGPRF 1104
            LGREP++GELA ATNM+  +VR+Q+EVGRAARNKLIKHNLRLVLFVINKYF++F SGP+F
Sbjct: 247  LGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF 306

Query: 1105 QDLCQAGAKGLITAIDRFEPKRRFRLSTYGLFWIRHAIMRSMTTSSFTRVSFGLESVRVE 1284
            QDLCQAG KGLITAIDRFEPKR+FRLSTY LFWIRHAI+RSMT SSFTRVSFGL+SVRVE
Sbjct: 307  QDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVE 366

Query: 1285 IQR 1293
            IQR
Sbjct: 367  IQR 369