BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003935
         (521 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD ...   164   4e-57
ref|NP_001254001.1| RNA polymerase sigma factor rpoD-like [Glyci...   150   2e-53
ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [...   149   8e-53
ref|XP_003541542.1| PREDICTED: RNA polymerase sigma factor rpoD-...   147   5e-52
dbj|BAJ34205.1| unnamed protein product [Thellungiella halophila]     148   6e-52

>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
           gi|302143685|emb|CBI22546.3| unnamed protein product
           [Vitis vinifera]
          Length = 518

 Score =  164 bits (416), Expect(2) = 4e-57
 Identities = 89/109 (81%), Positives = 92/109 (84%)
 Frame = -2

Query: 520 VRVEIQRVKLELMFKLGRKPTEEEIIEKVGISPERYREVMRASKSVLSLHARHATTQEEF 341
           VRVEIQR KLEL+FKL R PTEEEIIEKVGISPERY EVMRASKSVLSLHARHATTQEE+
Sbjct: 366 VRVEIQRAKLELLFKLQRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHATTQEEY 425

Query: 340 INGITXXXXXXXXXXRQPALLRFALDDVLDWLKPKESLVIRQRYGLDGK 194
           INGIT          RQ ALLR ALDDVLD LKPKESLV+RQRYGLDGK
Sbjct: 426 INGITDVEGVGGDRGRQLALLRLALDDVLDSLKPKESLVMRQRYGLDGK 474



 Score = 82.0 bits (201), Expect(2) = 4e-57
 Identities = 39/44 (88%), Positives = 42/44 (95%)
 Frame = -1

Query: 197 QSDRTLGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYI 66
           + DRTLGEIAGNL+ISREMVRKHEVKALMKLKHP RVDYLR+YI
Sbjct: 474 KGDRTLGEIAGNLSISREMVRKHEVKALMKLKHPARVDYLRQYI 517


>ref|NP_001254001.1| RNA polymerase sigma factor rpoD-like [Glycine max]
           gi|382365028|dbj|BAM05477.1| sigma-like factor 5A
           [Glycine max]
          Length = 512

 Score =  150 bits (378), Expect(2) = 2e-53
 Identities = 77/109 (70%), Positives = 89/109 (81%)
 Frame = -2

Query: 520 VRVEIQRVKLELMFKLGRKPTEEEIIEKVGISPERYREVMRASKSVLSLHARHATTQEEF 341
           VRV+IQR KL+L F+L R PTEEE++E++GISPERY EVM+ASK +LSLH+RH TTQEE+
Sbjct: 360 VRVDIQRTKLKLTFELQRSPTEEELVERIGISPERYYEVMKASKPILSLHSRHITTQEEY 419

Query: 340 INGITXXXXXXXXXXRQPALLRFALDDVLDWLKPKESLVIRQRYGLDGK 194
           INGIT          RQ A+LR ALDDVLD LKPKESLVIRQRYGLDGK
Sbjct: 420 INGITDVDGVNGDNRRQLAVLRLALDDVLDSLKPKESLVIRQRYGLDGK 468



 Score = 84.3 bits (207), Expect(2) = 2e-53
 Identities = 39/45 (86%), Positives = 43/45 (95%)
 Frame = -1

Query: 197 QSDRTLGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYIL 63
           + DRTLGEIAGNLNISREMVRKHEVKALMKLKHP R+DYLRRY++
Sbjct: 468 KGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARLDYLRRYVV 512


>ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223547495|gb|EEF48990.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 501

 Score =  149 bits (376), Expect(2) = 8e-53
 Identities = 81/109 (74%), Positives = 88/109 (80%)
 Frame = -2

Query: 520 VRVEIQRVKLELMFKLGRKPTEEEIIEKVGISPERYREVMRASKSVLSLHARHATTQEEF 341
           VR EIQ+ KLEL+ +L R+PTEEEIIE+VGIS ERY EV+RA+K  LSLHARHA TQEEF
Sbjct: 351 VRTEIQKAKLELLIELQRRPTEEEIIERVGISAERYHEVIRAAKPALSLHARHAVTQEEF 410

Query: 340 INGITXXXXXXXXXXRQPALLRFALDDVLDWLKPKESLVIRQRYGLDGK 194
           INGIT          RQPALLR ALDDVLD LKPKESLVIRQRYGLDGK
Sbjct: 411 INGIT--DIDGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGK 457



 Score = 83.2 bits (204), Expect(2) = 8e-53
 Identities = 39/45 (86%), Positives = 43/45 (95%)
 Frame = -1

Query: 197 QSDRTLGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYIL 63
           + DRTLGEIAGNLNISREMVRK+EVKALMKLKHP RVDYLRRY++
Sbjct: 457 KGDRTLGEIAGNLNISREMVRKYEVKALMKLKHPARVDYLRRYVV 501


>ref|XP_003541542.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 512

 Score =  147 bits (370), Expect(2) = 5e-52
 Identities = 76/109 (69%), Positives = 88/109 (80%)
 Frame = -2

Query: 520 VRVEIQRVKLELMFKLGRKPTEEEIIEKVGISPERYREVMRASKSVLSLHARHATTQEEF 341
           VRV+IQR KL+L F+L R PTEEE++E++GIS ERY EVM+ASK +LSLH+RH TTQEE+
Sbjct: 360 VRVDIQRTKLKLTFELQRSPTEEELVERIGISLERYHEVMKASKPILSLHSRHITTQEEY 419

Query: 340 INGITXXXXXXXXXXRQPALLRFALDDVLDWLKPKESLVIRQRYGLDGK 194
           INGIT          RQ A+LR ALDDVLD LKPKESLVIRQRYGLDGK
Sbjct: 420 INGITDVDGVNGDNRRQLAVLRLALDDVLDSLKPKESLVIRQRYGLDGK 468



 Score = 82.8 bits (203), Expect(2) = 5e-52
 Identities = 38/45 (84%), Positives = 43/45 (95%)
 Frame = -1

Query: 197 QSDRTLGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYIL 63
           + DRTLGEIAGNLNISRE+VRKHEVKALMKLKHP R+DYLRRY++
Sbjct: 468 KGDRTLGEIAGNLNISREIVRKHEVKALMKLKHPARLDYLRRYVV 512


>dbj|BAJ34205.1| unnamed protein product [Thellungiella halophila]
          Length = 511

 Score =  148 bits (373), Expect(2) = 6e-52
 Identities = 74/109 (67%), Positives = 90/109 (82%)
 Frame = -2

Query: 520 VRVEIQRVKLELMFKLGRKPTEEEIIEKVGISPERYREVMRASKSVLSLHARHATTQEEF 341
           VRVEI + K+EL+F+LGR PTE+E++E++ ISPERYREV+RA+K V SL+++H+ TQEEF
Sbjct: 359 VRVEIYKTKMELLFELGRLPTEDEVVERLKISPERYREVLRAAKPVFSLNSKHSVTQEEF 418

Query: 340 INGITXXXXXXXXXXRQPALLRFALDDVLDWLKPKESLVIRQRYGLDGK 194
           INGIT          RQPA+LR ALDDVLD LKPKESLVIRQRYGLDGK
Sbjct: 419 INGITDVDGVGADNRRQPAILRLALDDVLDSLKPKESLVIRQRYGLDGK 467



 Score = 81.3 bits (199), Expect(2) = 6e-52
 Identities = 39/45 (86%), Positives = 42/45 (93%)
 Frame = -1

Query: 197 QSDRTLGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYIL 63
           + DRTLGEIAGNLNISREMVRKHEVKALMKLKH  RVDYLR+YI+
Sbjct: 467 KGDRTLGEIAGNLNISREMVRKHEVKALMKLKHQARVDYLRQYIV 511