BLASTX nr result
ID: Coptis25_contig00003935
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00003935 (521 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD ... 164 4e-57 ref|NP_001254001.1| RNA polymerase sigma factor rpoD-like [Glyci... 150 2e-53 ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [... 149 8e-53 ref|XP_003541542.1| PREDICTED: RNA polymerase sigma factor rpoD-... 147 5e-52 dbj|BAJ34205.1| unnamed protein product [Thellungiella halophila] 148 6e-52 >ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera] gi|302143685|emb|CBI22546.3| unnamed protein product [Vitis vinifera] Length = 518 Score = 164 bits (416), Expect(2) = 4e-57 Identities = 89/109 (81%), Positives = 92/109 (84%) Frame = -2 Query: 520 VRVEIQRVKLELMFKLGRKPTEEEIIEKVGISPERYREVMRASKSVLSLHARHATTQEEF 341 VRVEIQR KLEL+FKL R PTEEEIIEKVGISPERY EVMRASKSVLSLHARHATTQEE+ Sbjct: 366 VRVEIQRAKLELLFKLQRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHATTQEEY 425 Query: 340 INGITXXXXXXXXXXRQPALLRFALDDVLDWLKPKESLVIRQRYGLDGK 194 INGIT RQ ALLR ALDDVLD LKPKESLV+RQRYGLDGK Sbjct: 426 INGITDVEGVGGDRGRQLALLRLALDDVLDSLKPKESLVMRQRYGLDGK 474 Score = 82.0 bits (201), Expect(2) = 4e-57 Identities = 39/44 (88%), Positives = 42/44 (95%) Frame = -1 Query: 197 QSDRTLGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYI 66 + DRTLGEIAGNL+ISREMVRKHEVKALMKLKHP RVDYLR+YI Sbjct: 474 KGDRTLGEIAGNLSISREMVRKHEVKALMKLKHPARVDYLRQYI 517 >ref|NP_001254001.1| RNA polymerase sigma factor rpoD-like [Glycine max] gi|382365028|dbj|BAM05477.1| sigma-like factor 5A [Glycine max] Length = 512 Score = 150 bits (378), Expect(2) = 2e-53 Identities = 77/109 (70%), Positives = 89/109 (81%) Frame = -2 Query: 520 VRVEIQRVKLELMFKLGRKPTEEEIIEKVGISPERYREVMRASKSVLSLHARHATTQEEF 341 VRV+IQR KL+L F+L R PTEEE++E++GISPERY EVM+ASK +LSLH+RH TTQEE+ Sbjct: 360 VRVDIQRTKLKLTFELQRSPTEEELVERIGISPERYYEVMKASKPILSLHSRHITTQEEY 419 Query: 340 INGITXXXXXXXXXXRQPALLRFALDDVLDWLKPKESLVIRQRYGLDGK 194 INGIT RQ A+LR ALDDVLD LKPKESLVIRQRYGLDGK Sbjct: 420 INGITDVDGVNGDNRRQLAVLRLALDDVLDSLKPKESLVIRQRYGLDGK 468 Score = 84.3 bits (207), Expect(2) = 2e-53 Identities = 39/45 (86%), Positives = 43/45 (95%) Frame = -1 Query: 197 QSDRTLGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYIL 63 + DRTLGEIAGNLNISREMVRKHEVKALMKLKHP R+DYLRRY++ Sbjct: 468 KGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARLDYLRRYVV 512 >ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis] gi|223547495|gb|EEF48990.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis] Length = 501 Score = 149 bits (376), Expect(2) = 8e-53 Identities = 81/109 (74%), Positives = 88/109 (80%) Frame = -2 Query: 520 VRVEIQRVKLELMFKLGRKPTEEEIIEKVGISPERYREVMRASKSVLSLHARHATTQEEF 341 VR EIQ+ KLEL+ +L R+PTEEEIIE+VGIS ERY EV+RA+K LSLHARHA TQEEF Sbjct: 351 VRTEIQKAKLELLIELQRRPTEEEIIERVGISAERYHEVIRAAKPALSLHARHAVTQEEF 410 Query: 340 INGITXXXXXXXXXXRQPALLRFALDDVLDWLKPKESLVIRQRYGLDGK 194 INGIT RQPALLR ALDDVLD LKPKESLVIRQRYGLDGK Sbjct: 411 INGIT--DIDGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGK 457 Score = 83.2 bits (204), Expect(2) = 8e-53 Identities = 39/45 (86%), Positives = 43/45 (95%) Frame = -1 Query: 197 QSDRTLGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYIL 63 + DRTLGEIAGNLNISREMVRK+EVKALMKLKHP RVDYLRRY++ Sbjct: 457 KGDRTLGEIAGNLNISREMVRKYEVKALMKLKHPARVDYLRRYVV 501 >ref|XP_003541542.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max] Length = 512 Score = 147 bits (370), Expect(2) = 5e-52 Identities = 76/109 (69%), Positives = 88/109 (80%) Frame = -2 Query: 520 VRVEIQRVKLELMFKLGRKPTEEEIIEKVGISPERYREVMRASKSVLSLHARHATTQEEF 341 VRV+IQR KL+L F+L R PTEEE++E++GIS ERY EVM+ASK +LSLH+RH TTQEE+ Sbjct: 360 VRVDIQRTKLKLTFELQRSPTEEELVERIGISLERYHEVMKASKPILSLHSRHITTQEEY 419 Query: 340 INGITXXXXXXXXXXRQPALLRFALDDVLDWLKPKESLVIRQRYGLDGK 194 INGIT RQ A+LR ALDDVLD LKPKESLVIRQRYGLDGK Sbjct: 420 INGITDVDGVNGDNRRQLAVLRLALDDVLDSLKPKESLVIRQRYGLDGK 468 Score = 82.8 bits (203), Expect(2) = 5e-52 Identities = 38/45 (84%), Positives = 43/45 (95%) Frame = -1 Query: 197 QSDRTLGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYIL 63 + DRTLGEIAGNLNISRE+VRKHEVKALMKLKHP R+DYLRRY++ Sbjct: 468 KGDRTLGEIAGNLNISREIVRKHEVKALMKLKHPARLDYLRRYVV 512 >dbj|BAJ34205.1| unnamed protein product [Thellungiella halophila] Length = 511 Score = 148 bits (373), Expect(2) = 6e-52 Identities = 74/109 (67%), Positives = 90/109 (82%) Frame = -2 Query: 520 VRVEIQRVKLELMFKLGRKPTEEEIIEKVGISPERYREVMRASKSVLSLHARHATTQEEF 341 VRVEI + K+EL+F+LGR PTE+E++E++ ISPERYREV+RA+K V SL+++H+ TQEEF Sbjct: 359 VRVEIYKTKMELLFELGRLPTEDEVVERLKISPERYREVLRAAKPVFSLNSKHSVTQEEF 418 Query: 340 INGITXXXXXXXXXXRQPALLRFALDDVLDWLKPKESLVIRQRYGLDGK 194 INGIT RQPA+LR ALDDVLD LKPKESLVIRQRYGLDGK Sbjct: 419 INGITDVDGVGADNRRQPAILRLALDDVLDSLKPKESLVIRQRYGLDGK 467 Score = 81.3 bits (199), Expect(2) = 6e-52 Identities = 39/45 (86%), Positives = 42/45 (93%) Frame = -1 Query: 197 QSDRTLGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYIL 63 + DRTLGEIAGNLNISREMVRKHEVKALMKLKH RVDYLR+YI+ Sbjct: 467 KGDRTLGEIAGNLNISREMVRKHEVKALMKLKHQARVDYLRQYIV 511