BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003931
         (1573 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo...   333   3e-91
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ...   332   5e-91
gb|AAP53315.2| retrotransposon protein, putative, unclassified [...   332   5e-91
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...   331   1e-90
ref|XP_002468588.1| hypothetical protein SORBIDRAFT_01g048580 [S...   315   1e-88

>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
          Length = 1594

 Score =  333 bits (853), Expect(2) = 3e-91
 Identities = 175/406 (43%), Positives = 244/406 (60%)
 Frame = -1

Query: 1573 KKGASGCMAIKLDLSKAFDKVEWSFLLETMEALGFSEKWRNWINQCISTTSLSFKINGSP 1394
            + G  G  A KLD+SKA+D+VEWSFL + M  LGF   W N I +C+ST +   ++NG  
Sbjct: 793  RSGQVGYAAFKLDMSKAYDRVEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTYRIRVNGEL 852

Query: 1393 MGFLKPERGIRQGDPLSPFLFIICMEVFSRLLSKAEKEKQIHGVKISRSDNPMSHLLFAD 1214
                 PERG+RQGDPLSP+LF++C E FS LLSK E+E ++HG++I +    +SHLLFAD
Sbjct: 853  SESFSPERGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFAD 912

Query: 1213 DSFIFCRANIAETHHLKDILELFKNVSGQEINFQKSGIFFSHNTHRRHQRIVKRILKIGK 1034
            DS I CRAN  E   L+ IL++++  SGQ IN  KS + FS NT    +  V   L + +
Sbjct: 913  DSLILCRANGGEAQQLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNMQR 972

Query: 1033 TITHEKYLGAPLILRRKSRIDFDEVLERVSQRMEGWRAKLLSQAGKLTLIKAVTSAIPSY 854
              T+EKYLG P+ + R     F  + ER+ QR++GW+ KLLS+AGK  LIKAV  AIP++
Sbjct: 973  ETTNEKYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQAIPTF 1032

Query: 853  MMSVFQLPTSTCNKLNSLNASFFWGRKEDNTNKVHYISWNKICLPKSSGGLGIRRASHHN 674
             M  F+L    C++++ + A ++W  +E + NK+H++SWNK+ LPK+ GGLG R     N
Sbjct: 1033 AMGCFELTKDLCDQISKMIAKYWWSNQEKD-NKMHWLSWNKLTLPKNMGGLGFRDIYIFN 1091

Query: 673  IALQAKLFWRILKEPDKPWVVSLLKKYVRGNSILRVKCPRRGASKIWQGILKARDAILPK 494
            +A+ AK  WR++++PD      L  KY       R K      S  W+ I K    +   
Sbjct: 1092 LAMLAKQGWRLIQDPDSLCSRVLRAKYFPLGDCFRPK-QTSNVSYTWRSIQKGLRVLQNG 1150

Query: 493  LCWHIGTGNDIDIWLDPWIPTLPYNKPMGPMPPVGPYRCVADLIDP 356
            + W +G G+ I+IW DPWIP     KPM P         V +LIDP
Sbjct: 1151 MIWRMGDGSKINIWADPWIPRGWSRKPMTPR-GANLVTKVEELIDP 1195



 Score = 30.8 bits (68), Expect(2) = 3e-91
 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
 Frame = -3

Query: 239  NVLDSIFLPTTVKEILKVPLSRQEHNNSIRWLEETNGELTVKSVYKYLSE-STNADQNQ- 66
            ++L   F    V  I  +P+   E  + + W  +  G  TVKS YK   E    A +N  
Sbjct: 1203 DLLSQTFWEEDVAAIKSIPV-HVEMEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGC 1261

Query: 65   ---------HRQLWKSIWNLNTAEKVKLF 6
                         WK +W L    K+K F
Sbjct: 1262 PGVSNWESGDDDFWKKLWKLGVPGKIKHF 1290


>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1509

 Score =  332 bits (851), Expect(2) = 5e-91
 Identities = 174/406 (42%), Positives = 243/406 (59%)
 Frame = -1

Query: 1573 KKGASGCMAIKLDLSKAFDKVEWSFLLETMEALGFSEKWRNWINQCISTTSLSFKINGSP 1394
            + G  G  A KLD+SKA+D+VEWSFL + M  LGF   W N I +C+ST +   ++NG  
Sbjct: 765  RSGQVGYAAFKLDMSKAYDRVEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTYRIRVNGEL 824

Query: 1393 MGFLKPERGIRQGDPLSPFLFIICMEVFSRLLSKAEKEKQIHGVKISRSDNPMSHLLFAD 1214
                 PERG+RQGDPLSP+LF++C E FS LLSK E+E ++HG++I +    +SHLLFAD
Sbjct: 825  SESFSPERGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFAD 884

Query: 1213 DSFIFCRANIAETHHLKDILELFKNVSGQEINFQKSGIFFSHNTHRRHQRIVKRILKIGK 1034
            DS I CRAN  E   L+ IL++++  SGQ IN  KS + FS NT    +  V   L + +
Sbjct: 885  DSLILCRANGGEAQQLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNMQR 944

Query: 1033 TITHEKYLGAPLILRRKSRIDFDEVLERVSQRMEGWRAKLLSQAGKLTLIKAVTSAIPSY 854
              T+EKYLG P+ + R     F  + ER+ QR++GW+ KLLS+AGK  LIKAV   IP++
Sbjct: 945  ETTNEKYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQVIPTF 1004

Query: 853  MMSVFQLPTSTCNKLNSLNASFFWGRKEDNTNKVHYISWNKICLPKSSGGLGIRRASHHN 674
             M  F+L    C++++ + A ++W  +E + NK+H++SWNK+ LPK+ GGLG R     N
Sbjct: 1005 AMGCFELTKDLCDQISKMIAKYWWSNQEKD-NKMHWLSWNKLTLPKNMGGLGFRDIYIFN 1063

Query: 673  IALQAKLFWRILKEPDKPWVVSLLKKYVRGNSILRVKCPRRGASKIWQGILKARDAILPK 494
            +A+ AK  WR++++PD      L  KY       R K      S  W+ I K    +   
Sbjct: 1064 LAMLAKQGWRLIQDPDSLCSRVLRAKYFPLGDCFRPK-QTSNVSYTWRSIQKGLRVLQNG 1122

Query: 493  LCWHIGTGNDIDIWLDPWIPTLPYNKPMGPMPPVGPYRCVADLIDP 356
            + W +G G+ I+IW DPWIP     KPM P         V +LIDP
Sbjct: 1123 MIWRVGDGSKINIWADPWIPRGWSRKPMTPR-GANLVTKVEELIDP 1167



 Score = 30.8 bits (68), Expect(2) = 5e-91
 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
 Frame = -3

Query: 239  NVLDSIFLPTTVKEILKVPLSRQEHNNSIRWLEETNGELTVKSVYKYLSE-STNADQNQ- 66
            ++L   F    V  I  +P+   E  + + W  +  G  TVKS YK   E    A +N  
Sbjct: 1175 DLLSQTFWEEDVAAIKSIPV-HVEMEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGC 1233

Query: 65   ---------HRQLWKSIWNLNTAEKVKLF 6
                         WK +W L    K+K F
Sbjct: 1234 PGVSNWESGDDDFWKKLWKLGVPGKIKHF 1262


>gb|AAP53315.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1505

 Score =  332 bits (851), Expect(2) = 5e-91
 Identities = 174/406 (42%), Positives = 243/406 (59%)
 Frame = -1

Query: 1573 KKGASGCMAIKLDLSKAFDKVEWSFLLETMEALGFSEKWRNWINQCISTTSLSFKINGSP 1394
            + G  G  A KLD+SKA+D+VEWSFL + M  LGF   W N I +C+ST +   ++NG  
Sbjct: 761  RSGQVGYAAFKLDMSKAYDRVEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTYRIRVNGEL 820

Query: 1393 MGFLKPERGIRQGDPLSPFLFIICMEVFSRLLSKAEKEKQIHGVKISRSDNPMSHLLFAD 1214
                 PERG+RQGDPLSP+LF++C E FS LLSK E+E ++HG++I +    +SHLLFAD
Sbjct: 821  SESFSPERGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFAD 880

Query: 1213 DSFIFCRANIAETHHLKDILELFKNVSGQEINFQKSGIFFSHNTHRRHQRIVKRILKIGK 1034
            DS I CRAN  E   L+ IL++++  SGQ IN  KS + FS NT    +  V   L + +
Sbjct: 881  DSLILCRANGGEAQQLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNMQR 940

Query: 1033 TITHEKYLGAPLILRRKSRIDFDEVLERVSQRMEGWRAKLLSQAGKLTLIKAVTSAIPSY 854
              T+EKYLG P+ + R     F  + ER+ QR++GW+ KLLS+AGK  LIKAV   IP++
Sbjct: 941  ETTNEKYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQVIPTF 1000

Query: 853  MMSVFQLPTSTCNKLNSLNASFFWGRKEDNTNKVHYISWNKICLPKSSGGLGIRRASHHN 674
             M  F+L    C++++ + A ++W  +E + NK+H++SWNK+ LPK+ GGLG R     N
Sbjct: 1001 AMGCFELTKDLCDQISKMIAKYWWSNQEKD-NKMHWLSWNKLTLPKNMGGLGFRDIYIFN 1059

Query: 673  IALQAKLFWRILKEPDKPWVVSLLKKYVRGNSILRVKCPRRGASKIWQGILKARDAILPK 494
            +A+ AK  WR++++PD      L  KY       R K      S  W+ I K    +   
Sbjct: 1060 LAMLAKQGWRLIQDPDSLCSRVLRAKYFPLGDCFRPK-QTSNVSYTWRSIQKGLRVLQNG 1118

Query: 493  LCWHIGTGNDIDIWLDPWIPTLPYNKPMGPMPPVGPYRCVADLIDP 356
            + W +G G+ I+IW DPWIP     KPM P         V +LIDP
Sbjct: 1119 MIWRVGDGSKINIWADPWIPRGWSRKPMTPR-GANLVTKVEELIDP 1163



 Score = 30.8 bits (68), Expect(2) = 5e-91
 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
 Frame = -3

Query: 239  NVLDSIFLPTTVKEILKVPLSRQEHNNSIRWLEETNGELTVKSVYKYLSE-STNADQNQ- 66
            ++L   F    V  I  +P+   E  + + W  +  G  TVKS YK   E    A +N  
Sbjct: 1171 DLLSQTFWEEDVAAIKSIPV-HVEMEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGC 1229

Query: 65   ---------HRQLWKSIWNLNTAEKVKLF 6
                         WK +W L    K+K F
Sbjct: 1230 PGVSNWESGDDDFWKKLWKLGVPGKIKHF 1258


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  331 bits (848), Expect(2) = 1e-90
 Identities = 173/406 (42%), Positives = 244/406 (60%)
 Frame = -1

Query: 1573 KKGASGCMAIKLDLSKAFDKVEWSFLLETMEALGFSEKWRNWINQCISTTSLSFKINGSP 1394
            + G  G  A KLD+SKA+D+VEWSFL + +  LGF   W N I +C+ST +   ++NG  
Sbjct: 820  RSGQVGYAAFKLDMSKAYDRVEWSFLHDMILKLGFHTDWVNLIMKCVSTVTYRIRVNGEL 879

Query: 1393 MGFLKPERGIRQGDPLSPFLFIICMEVFSRLLSKAEKEKQIHGVKISRSDNPMSHLLFAD 1214
                 P RG+RQGDPLSP+LF++C E FS LLSK E+E ++HG++I +    +SHLLFAD
Sbjct: 880  SESFSPGRGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFAD 939

Query: 1213 DSFIFCRANIAETHHLKDILELFKNVSGQEINFQKSGIFFSHNTHRRHQRIVKRILKIGK 1034
            DS I CRAN  E   L+ IL++++  SGQ IN  KS + FS NT    +R V   L + +
Sbjct: 940  DSLILCRANGGEAQQLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKRAVMAALNMQR 999

Query: 1033 TITHEKYLGAPLILRRKSRIDFDEVLERVSQRMEGWRAKLLSQAGKLTLIKAVTSAIPSY 854
              T+E+YLG P+ + R     F  + ER+ QR++GW+ KLLS+AGK  LIKAV  AIP++
Sbjct: 1000 ETTNERYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQAIPTF 1059

Query: 853  MMSVFQLPTSTCNKLNSLNASFFWGRKEDNTNKVHYISWNKICLPKSSGGLGIRRASHHN 674
             M  F+L    C++++ + A ++W  +E + NK+H++SWNK+ LPK+ GGLG R     N
Sbjct: 1060 AMGCFELTKDLCDQISKMIAKYWWSNQEKD-NKMHWLSWNKLTLPKNMGGLGFRDIYIFN 1118

Query: 673  IALQAKLFWRILKEPDKPWVVSLLKKYVRGNSILRVKCPRRGASKIWQGILKARDAILPK 494
            +A+ AK  WR++++PD      L  KY       R K      S  W+ I K    +   
Sbjct: 1119 LAMLAKQGWRLIQDPDSLCSRVLRAKYFPLGDCFRPK-QTSNVSYTWRSIQKGLRVLQNG 1177

Query: 493  LCWHIGTGNDIDIWLDPWIPTLPYNKPMGPMPPVGPYRCVADLIDP 356
            + W +G G+ I+IW DPWIP     KPM P         V +LIDP
Sbjct: 1178 MIWRVGDGSKINIWADPWIPRGWSRKPMTPR-GANLVTKVEELIDP 1222



 Score = 30.8 bits (68), Expect(2) = 1e-90
 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
 Frame = -3

Query: 239  NVLDSIFLPTTVKEILKVPLSRQEHNNSIRWLEETNGELTVKSVYKYLSE-STNADQNQ- 66
            ++L   F    V  I  +P+   E  + + W  +  G  TVKS YK   E    A +N  
Sbjct: 1230 DLLSQTFWEEDVAAIKSIPV-HVEMEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGC 1288

Query: 65   ---------HRQLWKSIWNLNTAEKVKLF 6
                         WK +W L    K+K F
Sbjct: 1289 PGVSNWESGDDDFWKKLWKLGVPGKIKHF 1317


>ref|XP_002468588.1| hypothetical protein SORBIDRAFT_01g048580 [Sorghum bicolor]
            gi|241922442|gb|EER95586.1| hypothetical protein
            SORBIDRAFT_01g048580 [Sorghum bicolor]
          Length = 517

 Score =  315 bits (807), Expect(2) = 1e-88
 Identities = 167/395 (42%), Positives = 239/395 (60%), Gaps = 2/395 (0%)
 Frame = -1

Query: 1534 LSKAFDKVEWSFLLETMEALGFSEKWRNWINQCISTTSLSFKINGSPMGFLKPERGIRQG 1355
            +SKA+D+VEW+FL   M  LGF +KW + I +C++T S    +NG     + P+RG RQG
Sbjct: 1    MSKAYDRVEWTFLQGMMRKLGFHDKWIHLIMKCVTTVSYRINVNGEYTDQIVPKRGSRQG 60

Query: 1354 DPLSPFLFIICMEVFSRLLSKAEKEKQIHGVKISRSDNPMSHLLFADDSFIFCRANIAET 1175
            DPLSP+LFI+C E  S +L  AE   +I G+KI R    ++HL FADDS +  RA   + 
Sbjct: 61   DPLSPYLFILCAEGLSAMLQSAENAGKIEGIKICRGAPRVNHLFFADDSLMLMRARKEDA 120

Query: 1174 HHLKDILELFKNVSGQEINFQKSGIFFSHNTHRRHQRIVKRILKIGKTITHEKYLGAPLI 995
            H LK ILE+++  SGQ IN  KS I FS NT    +  +++ L I +    EKYLG P+ 
Sbjct: 121  HELKHILEIYERASGQVINKDKSSIMFSPNTSDYFKGKMRKELSIMQEARSEKYLGGPIS 180

Query: 994  LRRKSRIDFDEVLERVSQRMEGWRAKLLSQAGKLTLIKAVTSAIPSYMMSVFQLPTSTCN 815
              +  +  F+ + +R+  R++GW+ KLLS+AGK  LIKAV  AIP+Y MS F L  S C+
Sbjct: 181  TGKSRKKAFEYIKQRIWARIQGWQEKLLSKAGKEILIKAVAQAIPTYAMSYFNLTKSFCD 240

Query: 814  KLNSLNASFFWGRKEDNTNKVHYISWNKICLPKSSGGLGIRRASHHNIALQAKLFWRILK 635
             L+S+   ++W  ++D TNK+H++SW K+ L K  GGLG R   H N+A+ A+  WRIL 
Sbjct: 241  DLSSMVGRYWWS-EQDKTNKIHWLSWEKLTLSKKRGGLGFRDLYHFNLAMLARQAWRILI 299

Query: 634  EPDKPWVVSLLKKYVRGNSILRVKCPRRGASKIWQGILKARDAILPKLCWHIGTGNDIDI 455
            EPD      L  +Y   ++IL+ K  R G    W+ I+   + +   + W IG+G++++I
Sbjct: 300  EPDTLCGRVLKARYFPNSNILQCKA-RAGILYTWRSIIDGINLLKEGIIWRIGSGSNVNI 358

Query: 454  WLDPWIPTLPYNKPMGPMPPVGPYRC--VADLIDP 356
            W DPWIP     KP+ P    G Y    V+DLI+P
Sbjct: 359  WTDPWIPRGTTRKPITPR---GRYLITKVSDLINP 390



 Score = 40.0 bits (92), Expect(2) = 1e-88
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
 Frame = -3

Query: 239 NVLDSIFLPTTVKEILKVPLSRQEHNNSIRWLEETNGELTVKSVYKYL------------ 96
           N++  +F P   + IL +P    E  +   W  ++ G  +VKS YK              
Sbjct: 398 NLISDVFWPEDAEAILMIPTD-YEAVDWPAWHYDSKGVFSVKSAYKLAVQIRDHQKGTDA 456

Query: 95  SESTNADQNQHRQLWKSIWNLNTAEKVKLF 6
           S S   +QN +   W  +W LN   K+K+F
Sbjct: 457 STSMAENQNTYGFRWGKLWQLNIPNKIKMF 486