BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003911
         (826 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002301567.1| predicted protein [Populus trichocarpa] gi|2...    53   4e-06
ref|XP_002265039.1| PREDICTED: protoheme IX farnesyltransferase,...    54   7e-06
ref|XP_002525009.1| protoheme IX farnesyltransferase, putative [...    53   7e-06

>ref|XP_002301567.1| predicted protein [Populus trichocarpa] gi|222843293|gb|EEE80840.1|
           predicted protein [Populus trichocarpa]
          Length = 335

 Score = 52.8 bits (125), Expect(2) = 4e-06
 Identities = 33/65 (50%), Positives = 42/65 (64%), Gaps = 5/65 (7%)
 Frame = +2

Query: 23  LEDASGRRTALVALRNSLYLLPLGYLAYD-----SEFSSQYKLLTI*KASLLFTFKYCMK 187
           L DASGRRTA VALRN LYL+PLG+LA D     S F  +  L+T+  ++L F+F Y  +
Sbjct: 183 LADASGRRTAAVALRNCLYLVPLGFLACDWGVTSSWFCLESSLITLAISALAFSF-YLNR 241

Query: 188 ATAKA 202
            T  A
Sbjct: 242 TTQNA 246



 Score = 24.3 bits (51), Expect(2) = 4e-06
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 1   LCRSDYAVGG 30
           LCRSDYA GG
Sbjct: 168 LCRSDYAAGG 177


>ref|XP_002265039.1| PREDICTED: protoheme IX farnesyltransferase, mitochondrial [Vitis
           vinifera] gi|297734684|emb|CBI16735.3| unnamed protein
           product [Vitis vinifera]
          Length = 422

 Score = 53.5 bits (127), Expect(2) = 7e-06
 Identities = 29/53 (54%), Positives = 37/53 (69%), Gaps = 5/53 (9%)
 Frame = +2

Query: 29  DASGRRTALVALRNSLYLLPLGYLAYD-----SEFSSQYKLLTI*KASLLFTF 172
           DASGRRTA+VALRNSLYL+PLG++AYD       F  +  LLT+  ++  F F
Sbjct: 268 DASGRRTAVVALRNSLYLIPLGFIAYDWGVTSGWFCLESSLLTLAISAAAFAF 320



 Score = 22.7 bits (47), Expect(2) = 7e-06
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 1   LCRSDYAVGG 30
           LCR DYA GG
Sbjct: 251 LCRDDYAAGG 260


>ref|XP_002525009.1| protoheme IX farnesyltransferase, putative [Ricinus communis]
           gi|223535717|gb|EEF37381.1| protoheme IX
           farnesyltransferase, putative [Ricinus communis]
          Length = 333

 Score = 53.1 bits (126), Expect(2) = 7e-06
 Identities = 32/64 (50%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
 Frame = +2

Query: 23  LEDASGRRTALVALRNSLYLLPLGYLAYD-----SEFSSQYKLLTI*KASLLFTFKYCMK 187
           L DASG+RTALVALRN LYL+P+G+LAYD       F  +  LLT+  A     F +C  
Sbjct: 182 LADASGQRTALVALRNCLYLVPMGFLAYDWGVTSGWFCLESSLLTL--AISASAFSFCRD 239

Query: 188 ATAK 199
            T K
Sbjct: 240 RTMK 243



 Score = 23.1 bits (48), Expect(2) = 7e-06
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 1   LCRSDYAVGG 30
           LCR+DYA GG
Sbjct: 167 LCRNDYAAGG 176