BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003901
         (853 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACJ84185.1| unknown [Medicago truncatula] gi|388516619|gb|AFK...   115   1e-23
ref|XP_003625462.1| Photosystem I reaction center subunit IV A [...   115   1e-23
ref|XP_002266424.1| PREDICTED: photosystem I reaction center sub...   114   2e-23
dbj|BAF80474.1| PSI reaction center subunit III [Citrus sinensis]     110   5e-22
dbj|BAF80472.1| PS1 reaction center subunit III [Citrus sinensis...   110   5e-22

>gb|ACJ84185.1| unknown [Medicago truncatula] gi|388516619|gb|AFK46371.1| unknown
           [Medicago truncatula]
          Length = 138

 Score =  115 bits (288), Expect = 1e-23
 Identities = 71/140 (50%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
 Frame = +1

Query: 223 MATCNMASAASGFVMXXXXXXXXXXXXX---RINLVFSPTKFN-NSRLXXXXXXXXXXXX 390
           MA+CNMASAASGFV+                R+N+V  PT  N NSRL            
Sbjct: 1   MASCNMASAASGFVLSPNNVSCNTNTNLLVSRMNMVMYPTTRNTNSRLVVRASEEAAATP 60

Query: 391 XXXXXXXXXXXXXXXXXXXXXXXXXXXILRKESYWFNGIGSVVVVDQDPSSRYPVVVRFN 570
                                      +LRKESYWFNGIGSVV VDQDP++RYPVVVRFN
Sbjct: 61  TVEGEAAPKTKPPPIGPKRGAKVK---VLRKESYWFNGIGSVVAVDQDPNTRYPVVVRFN 117

Query: 571 KVNYANVSTNNYALDEIQEV 630
           KVNYANVSTNNYALDEI+EV
Sbjct: 118 KVNYANVSTNNYALDEIEEV 137


>ref|XP_003625462.1| Photosystem I reaction center subunit IV A [Medicago truncatula]
           gi|355500477|gb|AES81680.1| Photosystem I reaction
           center subunit IV A [Medicago truncatula]
           gi|388502410|gb|AFK39271.1| unknown [Medicago
           truncatula]
          Length = 138

 Score =  115 bits (288), Expect = 1e-23
 Identities = 71/140 (50%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
 Frame = +1

Query: 223 MATCNMASAASGFVMXXXXXXXXXXXXX---RINLVFSPTKFN-NSRLXXXXXXXXXXXX 390
           MA+CNMASAASGFV+                R+N+V  PT  N NSRL            
Sbjct: 1   MASCNMASAASGFVLSPNNVSGNTNTNLLVSRMNMVMYPTTRNTNSRLVVRASEEAAATP 60

Query: 391 XXXXXXXXXXXXXXXXXXXXXXXXXXXILRKESYWFNGIGSVVVVDQDPSSRYPVVVRFN 570
                                      +LRKESYWFNGIGSVV VDQDP++RYPVVVRFN
Sbjct: 61  TVEGEAAPKTKPPPIGPKRGAKVK---VLRKESYWFNGIGSVVAVDQDPNTRYPVVVRFN 117

Query: 571 KVNYANVSTNNYALDEIQEV 630
           KVNYANVSTNNYALDEI+EV
Sbjct: 118 KVNYANVSTNNYALDEIEEV 137


>ref|XP_002266424.1| PREDICTED: photosystem I reaction center subunit IV A,
           chloroplastic-like [Vitis vinifera]
          Length = 143

 Score =  114 bits (286), Expect = 2e-23
 Identities = 68/142 (47%), Positives = 75/142 (52%), Gaps = 6/142 (4%)
 Frame = +1

Query: 223 MATCNMASAASGFVMXXXXXXXXXXXXXRINLVFSPTKFNNSRLXXXXXXXXXXXXXXXX 402
           MA+C+MASAASGFV+                ++FSP    NSRL                
Sbjct: 1   MASCSMASAASGFVLTPTPNSTTKPTSTPSMVIFSPKNHRNSRLVVRASEGGPPPPPPPP 60

Query: 403 XXXXXXXXXXXXXXXXXXXXXXX------ILRKESYWFNGIGSVVVVDQDPSSRYPVVVR 564
                                        ILRKESYW+NGIGSVV VDQDP +RYPVVVR
Sbjct: 61  PPAPAPVAEGGAPPPKPPPIGPKRGTKVKILRKESYWYNGIGSVVAVDQDPKTRYPVVVR 120

Query: 565 FNKVNYANVSTNNYALDEIQEV 630
           FNKVNYANVSTNNYALDEIQEV
Sbjct: 121 FNKVNYANVSTNNYALDEIQEV 142


>dbj|BAF80474.1| PSI reaction center subunit III [Citrus sinensis]
          Length = 143

 Score =  110 bits (274), Expect = 5e-22
 Identities = 67/143 (46%), Positives = 76/143 (53%), Gaps = 7/143 (4%)
 Frame = +1

Query: 223 MATCNMASAASGFVMXXXXXXXXXXXXXRINLVFSPTKFNNS-------RLXXXXXXXXX 381
           MA+CNMASAASGF +             + N++F P K N+S       R          
Sbjct: 1   MASCNMASAASGFSLTPNVATNVNSGS-KSNMLFFPPKNNSSNSFRLVVRASEDAAAPPA 59

Query: 382 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILRKESYWFNGIGSVVVVDQDPSSRYPVVV 561
                                         ILR+ESYW+NGIGSVV VDQDP SRYPVVV
Sbjct: 60  AATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVV 119

Query: 562 RFNKVNYANVSTNNYALDEIQEV 630
           RFNKVNYANVSTNNYALDEI+EV
Sbjct: 120 RFNKVNYANVSTNNYALDEIEEV 142


>dbj|BAF80472.1| PS1 reaction center subunit III [Citrus sinensis]
           gi|157678956|dbj|BAF80476.1| PSI reaction center subunit
           III [Citrus sinensis] gi|157678960|dbj|BAF80478.1| PSI
           reaction center subunit III [Citrus sinensis]
          Length = 143

 Score =  110 bits (274), Expect = 5e-22
 Identities = 67/143 (46%), Positives = 76/143 (53%), Gaps = 7/143 (4%)
 Frame = +1

Query: 223 MATCNMASAASGFVMXXXXXXXXXXXXXRINLVFSPTKFNNS-------RLXXXXXXXXX 381
           MA+CNMASAASGF +             + N++F P K N+S       R          
Sbjct: 1   MASCNMASAASGFSLTPNVATNVNSGS-KSNMLFFPPKNNSSNSFRLVVRASEEAAAPPA 59

Query: 382 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILRKESYWFNGIGSVVVVDQDPSSRYPVVV 561
                                         ILR+ESYW+NGIGSVV VDQDP SRYPVVV
Sbjct: 60  AATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVV 119

Query: 562 RFNKVNYANVSTNNYALDEIQEV 630
           RFNKVNYANVSTNNYALDEI+EV
Sbjct: 120 RFNKVNYANVSTNNYALDEIEEV 142