BLASTX nr result
ID: Coptis25_contig00003895
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00003895 (569 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI36804.3| unnamed protein product [Vitis vinifera] 65 2e-18 ref|XP_002319017.1| predicted protein [Populus trichocarpa] gi|2... 64 3e-18 ref|XP_002280635.2| PREDICTED: uncharacterized protein LOC100263... 65 6e-18 ref|XP_002512387.1| DNA polymerase zeta catalytic subunit, putat... 65 2e-17 ref|NP_001185344.1| DNA polymerase zeta subunit [Arabidopsis tha... 63 9e-16 >emb|CBI36804.3| unnamed protein product [Vitis vinifera] Length = 1732 Score = 65.5 bits (158), Expect(2) = 2e-18 Identities = 26/31 (83%), Positives = 31/31 (100%) Frame = -2 Query: 538 RTSKLEREVQHLAAICRHCGGGDWIVDSGIK 446 RT+KLER++QHLAAICRHCGGGDWIV+SG+K Sbjct: 1662 RTAKLERDIQHLAAICRHCGGGDWIVESGVK 1692 Score = 52.0 bits (123), Expect(2) = 2e-18 Identities = 23/32 (71%), Positives = 26/32 (81%) Frame = -3 Query: 324 FYERRKVQKELHTLSGVAADIGFYPRCMVELF 229 FYERRKVQK+L LS VA + GFYP+CMVE F Sbjct: 1701 FYERRKVQKDLQGLSSVATEAGFYPKCMVEWF 1732 >ref|XP_002319017.1| predicted protein [Populus trichocarpa] gi|222857393|gb|EEE94940.1| predicted protein [Populus trichocarpa] Length = 760 Score = 64.3 bits (155), Expect(2) = 3e-18 Identities = 26/31 (83%), Positives = 31/31 (100%) Frame = -2 Query: 538 RTSKLEREVQHLAAICRHCGGGDWIVDSGIK 446 RTSKLE+E+QHLAAICRHCGGGDW+++SGIK Sbjct: 690 RTSKLEKEMQHLAAICRHCGGGDWLLESGIK 720 Score = 52.8 bits (125), Expect(2) = 3e-18 Identities = 23/32 (71%), Positives = 26/32 (81%) Frame = -3 Query: 324 FYERRKVQKELHTLSGVAADIGFYPRCMVELF 229 FYERRKVQ+EL LS VA D+G YP+CMVE F Sbjct: 729 FYERRKVQRELQGLSAVAGDVGLYPKCMVEWF 760 >ref|XP_002280635.2| PREDICTED: uncharacterized protein LOC100263126 [Vitis vinifera] Length = 2002 Score = 65.5 bits (158), Expect(2) = 6e-18 Identities = 26/31 (83%), Positives = 31/31 (100%) Frame = -2 Query: 538 RTSKLEREVQHLAAICRHCGGGDWIVDSGIK 446 RT+KLER++QHLAAICRHCGGGDWIV+SG+K Sbjct: 1105 RTAKLERDIQHLAAICRHCGGGDWIVESGVK 1135 Score = 50.4 bits (119), Expect(2) = 6e-18 Identities = 22/30 (73%), Positives = 25/30 (83%) Frame = -3 Query: 324 FYERRKVQKELHTLSGVAADIGFYPRCMVE 235 FYERRKVQK+L LS VA + GFYP+CMVE Sbjct: 1144 FYERRKVQKDLQGLSSVATEAGFYPKCMVE 1173 >ref|XP_002512387.1| DNA polymerase zeta catalytic subunit, putative [Ricinus communis] gi|223548348|gb|EEF49839.1| DNA polymerase zeta catalytic subunit, putative [Ricinus communis] Length = 2066 Score = 65.1 bits (157), Expect(2) = 2e-17 Identities = 26/31 (83%), Positives = 31/31 (100%) Frame = -2 Query: 538 RTSKLEREVQHLAAICRHCGGGDWIVDSGIK 446 RTSKLERE+QHLAAICRHCGGGDW+++SG+K Sbjct: 1127 RTSKLEREMQHLAAICRHCGGGDWLLESGVK 1157 Score = 48.9 bits (115), Expect(2) = 2e-17 Identities = 22/29 (75%), Positives = 25/29 (86%) Frame = -3 Query: 324 FYERRKVQKELHTLSGVAADIGFYPRCMV 238 FYERRKVQKEL LS +AAD GFYP+CM+ Sbjct: 1166 FYERRKVQKELQGLSLIAADKGFYPKCML 1194 >ref|NP_001185344.1| DNA polymerase zeta subunit [Arabidopsis thaliana] gi|332196535|gb|AEE34656.1| DNA polymerase zeta subunit [Arabidopsis thaliana] Length = 1916 Score = 63.2 bits (152), Expect(2) = 9e-16 Identities = 25/31 (80%), Positives = 29/31 (93%) Frame = -2 Query: 538 RTSKLEREVQHLAAICRHCGGGDWIVDSGIK 446 +TSKLERE+QHLA ICRHCGGGDW+V SG+K Sbjct: 1846 KTSKLEREMQHLATICRHCGGGDWVVQSGVK 1876 Score = 45.4 bits (106), Expect(2) = 9e-16 Identities = 20/32 (62%), Positives = 23/32 (71%) Frame = -3 Query: 324 FYERRKVQKELHTLSGVAADIGFYPRCMVELF 229 FYERRKVQKEL LS +A + YP+CM E F Sbjct: 1885 FYERRKVQKELRGLSSIATESELYPKCMAEWF 1916