BLASTX nr result

ID: Coptis25_contig00003877 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003877
         (899 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269582.1| PREDICTED: uncharacterized protein LOC100242...   131   2e-28
ref|XP_002314335.1| predicted protein [Populus trichocarpa] gi|2...   124   2e-26
ref|XP_003609890.1| hypothetical protein MTR_4g124080 [Medicago ...   116   8e-24
gb|ACJ86204.1| unknown [Medicago truncatula] gi|388508412|gb|AFK...   115   1e-23
ref|XP_003542403.1| PREDICTED: uncharacterized protein LOC100776...   104   2e-20

>ref|XP_002269582.1| PREDICTED: uncharacterized protein LOC100242564 [Vitis vinifera]
           gi|147865786|emb|CAN81152.1| hypothetical protein
           VITISV_020818 [Vitis vinifera]
          Length = 362

 Score =  131 bits (330), Expect = 2e-28
 Identities = 77/180 (42%), Positives = 101/180 (56%), Gaps = 9/180 (5%)
 Frame = -2

Query: 724 CGEVIDMNSLRNGATAKPVVHEPQ--------IELPVKVVSTSPDLVIEEIKRVVTVDRI 569
           CGEV+DM  LR+GA  +P+  E Q        +E P  +   +  L  E    V T   +
Sbjct: 185 CGEVVDMTHLRSGAVVEPIKDESQPVIQEAKGLEEPSLLQPVTTTLKGECCTAVNTATSV 244

Query: 568 Q-DRNLPSCSSESSVVVGTSAEKIEVCMGGKCKKSGASALLEEFQHXXXXXXXXXXXXXX 392
             D+N      E + V+G  A++IEVCMGGKCKKSGA ALLEEF+               
Sbjct: 245 AVDQN------EKTQVMGAGAKRIEVCMGGKCKKSGAEALLEEFERVVGVEGAVVGCKCM 298

Query: 391 XXCRDGPNVRIVNECNADLAENLDGPVRPQTNPLCIGVGLEDVGVIVANFLGQERQDLGL 212
             CR GPNVR++N      AE +D  VR   NPLC+GVGL+DVG+IV+NF G+  +D+GL
Sbjct: 299 GKCRVGPNVRVLNSIEGVEAEGMDDSVRTPANPLCVGVGLQDVGIIVSNFFGETHEDIGL 358


>ref|XP_002314335.1| predicted protein [Populus trichocarpa] gi|222863375|gb|EEF00506.1|
           predicted protein [Populus trichocarpa]
          Length = 237

 Score =  124 bits (312), Expect = 2e-26
 Identities = 83/187 (44%), Positives = 100/187 (53%), Gaps = 22/187 (11%)
 Frame = -2

Query: 724 CGEVIDMNSLRNGATAKPVVHEPQIELPVKVVSTSPDLVIEEIKRVVTVDRIQDRNL--- 554
           CGEVIDM  LRN A A+P++ E Q     +  S  P L+ +E   V  ++   D  L   
Sbjct: 49  CGEVIDMKRLRNEAVAEPIIGELQSVAQEEPTSILPALLTQE-SNVTEINGYHDHGLGIH 107

Query: 553 ---------PSCSS---------ESSVVVGTSAEKIEVCMGGKCKKSGASALLEEFQHXX 428
                     SCS+          SS++ GTS ++IEVCMG KCKKSG  ALLEEF+   
Sbjct: 108 GEECGGARSTSCSNAIRVSCNPTSSSMMSGTSDKRIEVCMGNKCKKSGGVALLEEFEKAV 167

Query: 427 XXXXXXXXXXXXXXCRDGPNVRIVNECNADLAENLDGPVR-PQTNPLCIGVGLEDVGVIV 251
                         CRDGPNVRI+   N    E +D  VR P  NPLCIGVGLEDV VIV
Sbjct: 168 GIGGAVVGCKCMGKCRDGPNVRILKSGN----EGVDDSVRIPAANPLCIGVGLEDVDVIV 223

Query: 250 ANFLGQE 230
           ANF G+E
Sbjct: 224 ANFFGKE 230


>ref|XP_003609890.1| hypothetical protein MTR_4g124080 [Medicago truncatula]
           gi|355510945|gb|AES92087.1| hypothetical protein
           MTR_4g124080 [Medicago truncatula]
          Length = 341

 Score =  116 bits (290), Expect = 8e-24
 Identities = 68/179 (37%), Positives = 100/179 (55%), Gaps = 5/179 (2%)
 Frame = -2

Query: 724 CGEVIDMNSLRNGATAKPVVHEPQIELPVKVVSTSPDLVIEEIKRVVTVDRIQDRN---L 554
           CGEV+DMN+ R GA    V  +P  EL +K+      +  +       +D     N   +
Sbjct: 161 CGEVVDMNTFR-GAGVVDVATKPVDELELKLKQPMLSIPEDSTSHHHVMDVCTTNNASLV 219

Query: 553 PSCSSESSVVVGTSAEKIEVCMGGKCKKSGASALLEEFQHXXXXXXXXXXXXXXXXCR-- 380
                E++VV+ T+ ++IEVCMG KCKKSGA+ALL+EF+                  +  
Sbjct: 220 TGFKKETNVVIPTAQKRIEVCMGNKCKKSGAAALLQEFEKVVGVEGEGVVVGCKCMGKCK 279

Query: 379 DGPNVRIVNECNADLAENLDGPVRPQTNPLCIGVGLEDVGVIVANFLGQERQDLGLMVA 203
             PNVRI N  + ++ + +D  V+  +NPLCIGVGLEDV  IVA FLG++ +D+G++ A
Sbjct: 280 TAPNVRIQNSVDLNMVQGIDDSVKIPSNPLCIGVGLEDVDTIVARFLGEDYKDVGMVAA 338


>gb|ACJ86204.1| unknown [Medicago truncatula] gi|388508412|gb|AFK42272.1| unknown
           [Medicago truncatula] gi|388510858|gb|AFK43495.1|
           unknown [Medicago truncatula]
          Length = 341

 Score =  115 bits (289), Expect = 1e-23
 Identities = 68/179 (37%), Positives = 100/179 (55%), Gaps = 5/179 (2%)
 Frame = -2

Query: 724 CGEVIDMNSLRNGATAKPVVHEPQIELPVKVVSTSPDLVIEEIKRVVTVDRIQDRN---L 554
           CGEV+DMN+ R GA    V  +P  EL +K+      +  +       +D     N   +
Sbjct: 161 CGEVVDMNTFR-GAGVVDVATKPVDELELKLKRPMLSIPEDSTSHHHVMDVCTTNNASLV 219

Query: 553 PSCSSESSVVVGTSAEKIEVCMGGKCKKSGASALLEEFQHXXXXXXXXXXXXXXXXCR-- 380
                E++VV+ T+ ++IEVCMG KCKKSGA+ALL+EF+                  +  
Sbjct: 220 TGFKKETNVVIPTAQKRIEVCMGNKCKKSGAAALLQEFEKVVGVEGEGVVVGCKCMGKCK 279

Query: 379 DGPNVRIVNECNADLAENLDGPVRPQTNPLCIGVGLEDVGVIVANFLGQERQDLGLMVA 203
             PNVRI N  + ++ + +D  V+  +NPLCIGVGLEDV  IVA FLG++ +D+G++ A
Sbjct: 280 TAPNVRIQNSVDLNMVQGIDDSVKIPSNPLCIGVGLEDVDTIVARFLGEDYKDVGMVAA 338


>ref|XP_003542403.1| PREDICTED: uncharacterized protein LOC100776407 [Glycine max]
          Length = 327

 Score =  104 bits (260), Expect = 2e-20
 Identities = 66/181 (36%), Positives = 93/181 (51%), Gaps = 7/181 (3%)
 Frame = -2

Query: 724 CGEVIDMNSLRNGA---TAKPVVHEPQIELPVKVVSTSP---DLVIEEIKRVVTVDRIQD 563
           C +V+DMN  R GA      PV   P  + P+   + +    D +    K  ++V  ++D
Sbjct: 147 CDQVVDMNCFRAGAGVVVPAPVEESPLPKTPIVEDTNAKAHRDAMALCSKNDISVSSVRD 206

Query: 562 RNLPSCSSESSVVVGTSAEKIEVCMGGKCKKSGASALLEEFQHXXXXXXXXXXXXXXXXC 383
                  SES+VV     ++IEVCMG KCK+SGA+AL++EF+                  
Sbjct: 207 ----CIKSESAVVTAAPQKRIEVCMGTKCKRSGAAALMQEFERVVGVEGGAVVSCKCMGK 262

Query: 382 -RDGPNVRIVNECNADLAENLDGPVRPQTNPLCIGVGLEDVGVIVANFLGQERQDLGLMV 206
            +  PNV++ N  +  LA  LD  V    NPLCIGVGL DV  IVA FLG+   D+G++ 
Sbjct: 263 CKTAPNVKVQNSVDHSLARGLDDSVNIPANPLCIGVGLGDVDAIVARFLGESHTDIGMIG 322

Query: 205 A 203
           A
Sbjct: 323 A 323


Top