BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003866
         (1403 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281543.1| PREDICTED: geranylgeranyl transferase type-2...   335   2e-89
ref|XP_002319501.1| predicted protein [Populus trichocarpa] gi|2...   331   2e-88
ref|XP_002275861.1| PREDICTED: geranylgeranyl transferase type-2...   331   3e-88
ref|XP_004135836.1| PREDICTED: geranylgeranyl transferase type-2...   328   2e-87
ref|XP_002871518.1| beta subunit of rab geranylgeranyltransferas...   328   3e-87

>ref|XP_002281543.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta [Vitis
           vinifera] gi|147821440|emb|CAN74579.1| hypothetical
           protein VITISV_024797 [Vitis vinifera]
           gi|296081232|emb|CBI17976.3| unnamed protein product
           [Vitis vinifera]
          Length = 317

 Score =  335 bits (858), Expect = 2e-89
 Identities = 154/181 (85%), Positives = 167/181 (92%)
 Frame = -3

Query: 543 VAGLQKEDGSFAGDMWGEIDSRFSYIAICCLSILHRLDKINVGKAVDYILSCKNLDGGFG 364
           +AGLQ  DGSF+GDMWGEID+RFSYIAICCLS+L  LDKINV KAV+YI+SCKNLDGGFG
Sbjct: 113 IAGLQNVDGSFSGDMWGEIDTRFSYIAICCLSLLQCLDKINVEKAVNYIVSCKNLDGGFG 172

Query: 363 CTPGAESHSGQIFCCVAALALTGSLHHVDKDLLGWWLCERQDKSGGLNGRPMKDPDVCYS 184
           CTPGAESH+GQIFCCV ALALTGSLHHVDKDLLGWWLCERQ KSGGLNGRP K PDVCYS
Sbjct: 173 CTPGAESHAGQIFCCVGALALTGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYS 232

Query: 183 WWVLSSLTIIDRVHWIDKNELARFIIDCQDKENGGISDRPNFAVDVFHTYFGVGGLSLLE 4
           WWVLSSL +IDR HWIDK++L +FIIDCQD+ENGGISDRP+ AVDVFHTYFGV GLSLLE
Sbjct: 233 WWVLSSLIMIDRAHWIDKDKLIKFIIDCQDRENGGISDRPDDAVDVFHTYFGVAGLSLLE 292

Query: 3   Y 1
           Y
Sbjct: 293 Y 293



 Score = 57.4 bits (137), Expect = 9e-06
 Identities = 37/175 (21%), Positives = 79/175 (45%)
 Frame = -3

Query: 534 LQKEDGSFAGDMWGEIDSRFSYIAICCLSILHRLDKINVGKAVDYILSCKNLDGGFGCTP 355
           ++K    F   +   +    +Y  +  L +L +L+ ++  + V +++ C++  GGFG   
Sbjct: 20  VEKRKDDFESVVTEHLRMNGAYWGLTTLDLLGKLEIVDQDEVVSWVMECQHESGGFGGNI 79

Query: 354 GAESHSGQIFCCVAALALTGSLHHVDKDLLGWWLCERQDKSGGLNGRPMKDPDVCYSWWV 175
           G + H       V  LAL   L+ +D D +  ++   Q+  G  +G    + D  +S+  
Sbjct: 80  GHDPHIVHTLSAVQVLALFDKLNVLDIDKITNYIAGLQNVDGSFSGDMWGEIDTRFSYIA 139

Query: 174 LSSLTIIDRVHWIDKNELARFIIDCQDKENGGISDRPNFAVDVFHTYFGVGGLSL 10
           +  L+++  +  I+  +   +I+ C++ + GG    P         +  VG L+L
Sbjct: 140 ICCLSLLQCLDKINVEKAVNYIVSCKNLD-GGFGCTPGAESHAGQIFCCVGALAL 193


>ref|XP_002319501.1| predicted protein [Populus trichocarpa] gi|222857877|gb|EEE95424.1|
           predicted protein [Populus trichocarpa]
          Length = 313

 Score =  331 bits (849), Expect = 2e-88
 Identities = 149/181 (82%), Positives = 167/181 (92%)
 Frame = -3

Query: 543 VAGLQKEDGSFAGDMWGEIDSRFSYIAICCLSILHRLDKINVGKAVDYILSCKNLDGGFG 364
           ++GLQ EDGSF+GD WGE+DSRFSY+AICCLSILHRLDKINV KAV+YI SCKN+DGGFG
Sbjct: 109 ISGLQNEDGSFSGDEWGEVDSRFSYLAICCLSILHRLDKINVEKAVNYIASCKNVDGGFG 168

Query: 363 CTPGAESHSGQIFCCVAALALTGSLHHVDKDLLGWWLCERQDKSGGLNGRPMKDPDVCYS 184
           CTPG ESH+GQIFCCV ALA+TGSLHHVDKDLLGWWLCERQ KSGGLNGRP K PDVCYS
Sbjct: 169 CTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYS 228

Query: 183 WWVLSSLTIIDRVHWIDKNELARFIIDCQDKENGGISDRPNFAVDVFHTYFGVGGLSLLE 4
           WWVLSSL +IDRVHWI+K++L +FI++CQD ENGGISDRP+ AVDV+HTYFGV GLSLLE
Sbjct: 229 WWVLSSLIMIDRVHWINKDKLVKFILNCQDTENGGISDRPDDAVDVYHTYFGVAGLSLLE 288

Query: 3   Y 1
           Y
Sbjct: 289 Y 289



 Score = 63.5 bits (153), Expect = 1e-07
 Identities = 39/178 (21%), Positives = 82/178 (46%)
 Frame = -3

Query: 543 VAGLQKEDGSFAGDMWGEIDSRFSYIAICCLSILHRLDKINVGKAVDYILSCKNLDGGFG 364
           +  ++K   SF   +   +    +Y  +  L +L +LD ++  + +++I+ C++  GGF 
Sbjct: 13  ILSVEKRKDSFESVVLEHLRMNGAYWGLATLDLLGKLDALDSNEVIEWIMKCQHESGGFA 72

Query: 363 CTPGAESHSGQIFCCVAALALTGSLHHVDKDLLGWWLCERQDKSGGLNGRPMKDPDVCYS 184
              G + H       V  LAL   L+ +D D +  ++   Q++ G  +G    + D  +S
Sbjct: 73  GNIGHDPHMLYTLSAVQVLALFDKLNVLDADKVANYISGLQNEDGSFSGDEWGEVDSRFS 132

Query: 183 WWVLSSLTIIDRVHWIDKNELARFIIDCQDKENGGISDRPNFAVDVFHTYFGVGGLSL 10
           +  +  L+I+ R+  I+  +   +I  C++ + GG    P         +  VG L++
Sbjct: 133 YLAICCLSILHRLDKINVEKAVNYIASCKNVD-GGFGCTPGGESHAGQIFCCVGALAI 189


>ref|XP_002275861.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta [Vitis
           vinifera] gi|147860391|emb|CAN82570.1| hypothetical
           protein VITISV_016117 [Vitis vinifera]
           gi|296090220|emb|CBI40039.3| unnamed protein product
           [Vitis vinifera]
          Length = 317

 Score =  331 bits (848), Expect = 3e-88
 Identities = 152/181 (83%), Positives = 166/181 (91%)
 Frame = -3

Query: 543 VAGLQKEDGSFAGDMWGEIDSRFSYIAICCLSILHRLDKINVGKAVDYILSCKNLDGGFG 364
           +AGLQ EDGSF+GDMWGEID+RFSYIAIC LS+L RLDKINV KAV+YI+SCKNLDGGFG
Sbjct: 113 IAGLQNEDGSFSGDMWGEIDTRFSYIAICSLSLLQRLDKINVEKAVNYIVSCKNLDGGFG 172

Query: 363 CTPGAESHSGQIFCCVAALALTGSLHHVDKDLLGWWLCERQDKSGGLNGRPMKDPDVCYS 184
           CTPGAESH+GQIFCCV+ALALTGSLHHVDKDLLGWWLCERQ KSG LNGRP K PDVCYS
Sbjct: 173 CTPGAESHAGQIFCCVSALALTGSLHHVDKDLLGWWLCERQVKSGALNGRPEKLPDVCYS 232

Query: 183 WWVLSSLTIIDRVHWIDKNELARFIIDCQDKENGGISDRPNFAVDVFHTYFGVGGLSLLE 4
           WWVLSSL +IDR HWIDK +L +FI+DCQDKENGGISDRP+ AVDVFHTYFGV GL+ LE
Sbjct: 233 WWVLSSLIMIDRAHWIDKEKLIKFILDCQDKENGGISDRPDDAVDVFHTYFGVAGLAHLE 292

Query: 3   Y 1
           Y
Sbjct: 293 Y 293



 Score = 65.1 bits (157), Expect = 4e-08
 Identities = 33/154 (21%), Positives = 76/154 (49%)
 Frame = -3

Query: 543 VAGLQKEDGSFAGDMWGEIDSRFSYIAICCLSILHRLDKINVGKAVDYILSCKNLDGGFG 364
           +  ++K   +F   +   +    +Y  +  L +L +LD ++  + + +++ C++  GGFG
Sbjct: 17  ILSVEKRKDNFESVVMEHLRMNGAYWGLTTLDLLGKLDMVDEDEIISWVMECQHESGGFG 76

Query: 363 CTPGAESHSGQIFCCVAALALTGSLHHVDKDLLGWWLCERQDKSGGLNGRPMKDPDVCYS 184
              G + H       V  LAL   L+ +D D +  ++   Q++ G  +G    + D  +S
Sbjct: 77  GNVGHDPHILYTLSAVQVLALFDKLNVLDIDKVSNYIAGLQNEDGSFSGDMWGEIDTRFS 136

Query: 183 WWVLSSLTIIDRVHWIDKNELARFIIDCQDKENG 82
           +  + SL+++ R+  I+  +   +I+ C++ + G
Sbjct: 137 YIAICSLSLLQRLDKINVEKAVNYIVSCKNLDGG 170



 Score = 59.3 bits (142), Expect = 2e-06
 Identities = 39/145 (26%), Positives = 68/145 (46%)
 Frame = -3

Query: 438 RLDKINVGKAVDYILSCKNLDGGFGCTPGAESHSGQIFCCVAALALTGSLHHVDKDLLGW 259
           ++  + V K V YILS +     F             +  +  L L G L  VD+D +  
Sbjct: 4   QIGDLEVEKHVQYILSVEKRKDNFESVVMEHLRMNGAYWGLTTLDLLGKLDMVDEDEIIS 63

Query: 258 WLCERQDKSGGLNGRPMKDPDVCYSWWVLSSLTIIDRVHWIDKNELARFIIDCQDKENGG 79
           W+ E Q +SGG  G    DP + Y+   +  L + D+++ +D ++++ +I   Q+ E+G 
Sbjct: 64  WVMECQHESGGFGGNVGHDPHILYTLSAVQVLALFDKLNVLDIDKVSNYIAGLQN-EDGS 122

Query: 78  ISDRPNFAVDVFHTYFGVGGLSLLE 4
            S      +D   +Y  +  LSLL+
Sbjct: 123 FSGDMWGEIDTRFSYIAICSLSLLQ 147


>ref|XP_004135836.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta-like
           [Cucumis sativus] gi|449490992|ref|XP_004158768.1|
           PREDICTED: geranylgeranyl transferase type-2 subunit
           beta-like [Cucumis sativus]
          Length = 317

 Score =  328 bits (842), Expect = 2e-87
 Identities = 148/181 (81%), Positives = 165/181 (91%)
 Frame = -3

Query: 543 VAGLQKEDGSFAGDMWGEIDSRFSYIAICCLSILHRLDKINVGKAVDYILSCKNLDGGFG 364
           V GLQ EDGSF+GD+WGE+DSRFSYIAI CLS+LH+LDKINV KAV++++SCKN+DGGFG
Sbjct: 109 VVGLQNEDGSFSGDIWGEVDSRFSYIAILCLSLLHQLDKINVEKAVNFVVSCKNMDGGFG 168

Query: 363 CTPGAESHSGQIFCCVAALALTGSLHHVDKDLLGWWLCERQDKSGGLNGRPMKDPDVCYS 184
           CTPG ESHSGQIFCCV ALALTGSLHHVDKDLLGWWLCERQ KSGGLNGRP K PDVCYS
Sbjct: 169 CTPGGESHSGQIFCCVGALALTGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYS 228

Query: 183 WWVLSSLTIIDRVHWIDKNELARFIIDCQDKENGGISDRPNFAVDVFHTYFGVGGLSLLE 4
           WWVLSSL +IDRVHWI K +L +FI+DCQD ENGGISDRP+ AVDV+HTYFG+ GLSLLE
Sbjct: 229 WWVLSSLIMIDRVHWISKEKLIKFILDCQDTENGGISDRPDDAVDVYHTYFGIAGLSLLE 288

Query: 3   Y 1
           Y
Sbjct: 289 Y 289



 Score = 61.6 bits (148), Expect = 5e-07
 Identities = 39/178 (21%), Positives = 82/178 (46%)
 Frame = -3

Query: 543 VAGLQKEDGSFAGDMWGEIDSRFSYIAICCLSILHRLDKINVGKAVDYILSCKNLDGGFG 364
           +  ++K+   F   +   +    +Y  +  L IL +LD ++  + V +++SC++  GGF 
Sbjct: 13  ILSVEKKKDDFQSVVMEHLRMNGAYWGLTALDILGKLDTVDADEVVSWVMSCQHESGGFS 72

Query: 363 CTPGAESHSGQIFCCVAALALTGSLHHVDKDLLGWWLCERQDKSGGLNGRPMKDPDVCYS 184
              G + H       V  LAL   L  +D D +  ++   Q++ G  +G    + D  +S
Sbjct: 73  GNVGHDPHILYTLSAVQVLALFDKLDVLDVDKVTNYVVGLQNEDGSFSGDIWGEVDSRFS 132

Query: 183 WWVLSSLTIIDRVHWIDKNELARFIIDCQDKENGGISDRPNFAVDVFHTYFGVGGLSL 10
           +  +  L+++ ++  I+  +   F++ C++ + GG    P         +  VG L+L
Sbjct: 133 YIAILCLSLLHQLDKINVEKAVNFVVSCKNMD-GGFGCTPGGESHSGQIFCCVGALAL 189


>ref|XP_002871518.1| beta subunit of rab geranylgeranyltransferase [Arabidopsis lyrata
           subsp. lyrata] gi|297317355|gb|EFH47777.1| beta subunit
           of rab geranylgeranyltransferase [Arabidopsis lyrata
           subsp. lyrata]
          Length = 313

 Score =  328 bits (840), Expect = 3e-87
 Identities = 152/181 (83%), Positives = 164/181 (90%)
 Frame = -3

Query: 543 VAGLQKEDGSFAGDMWGEIDSRFSYIAICCLSILHRLDKINVGKAVDYILSCKNLDGGFG 364
           VA LQ EDGSF+GDMWGEID+RFSYIAICCLSIL  LDKINV KAV+YI+SCKNLDGGFG
Sbjct: 109 VAKLQNEDGSFSGDMWGEIDTRFSYIAICCLSILKCLDKINVEKAVEYIVSCKNLDGGFG 168

Query: 363 CTPGAESHSGQIFCCVAALALTGSLHHVDKDLLGWWLCERQDKSGGLNGRPMKDPDVCYS 184
           CTPGAESH+GQIFCCV ALA+TGSLHHVDKDLLGWWLCERQ K GGLNGRP K  DVCYS
Sbjct: 169 CTPGAESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQLKGGGLNGRPEKLADVCYS 228

Query: 183 WWVLSSLTIIDRVHWIDKNELARFIIDCQDKENGGISDRPNFAVDVFHTYFGVGGLSLLE 4
           WWVLSSL +IDRVHWIDK +L +FI+DCQD ENGGISDRP+ AVD+FHTYFGV GLSLLE
Sbjct: 229 WWVLSSLIMIDRVHWIDKAKLVKFILDCQDLENGGISDRPDDAVDIFHTYFGVAGLSLLE 288

Query: 3   Y 1
           Y
Sbjct: 289 Y 289